Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006882

Physical Location & Seq

Genomic Coordinates Reverse (-)

36572596 .. 36576947

Gene Structure 4352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45317

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGGACCTTCCCAAGGGAAATGGAAATGAAAATGGTGGAGCCTCGGGTGATGAACAAGAAGCATCGAATTCTCGCAAGAGAGGGAAGACTTATCACCGCCACACCTCTCAGCAGATACAACATCTTGAAGCATTTTTCAAGAAATGCCCCCACCCGGACGATAACCAACGTCGTCAGTTGAGCAAGGAGTTAGGGTTAGAGCCACAACAGATCAAGTTTTGGTTCCAAAACAAGAGGACTCAAACAAAGACTCAAACTGAGAGAGCAGACAACTCCACTCTTCGAGCGGAAAATAGTAGGATCCAGTGTGAGAACTATGCAATTAAAGAGGCTTTGAAGAATGTCATTTGTCCTGCTTGTGGAGGTCCTCCTTTTGGAGAGCAAGACCGGCAAAAGAGTTTGCAGAAACTTCACTTGGAGAATGCCCAATTGAAAGAAGAGGCAAATTTTGAAATAAATAATTTTCTTTACATACACTATTATTTTCATCATATTTATAATGACACATTAATTCATGACAAAGTAGCCACCCTTCTTTCCAAGTTTATTGGGAAACCGCTCTCTCAAATAGATTCGTTGACATATGCCGCTAGATCCTCGCCGGATGTATCACCAGGATTGTTAATAAACCAAGCAATGAGAAGTTCTGACCTTAGTCATGAATTTATTAATCCTACAATTAGTAACAATGCTGCGCTAGCTTATTACCAGGTAAATGCAATCCCTGAGACTGAAAAGGCAGTCATGATAGAGACAGCGGCAAGTGCCATGGAAGAGTTGATTAGAATTTTGCGGATCAATGAGCCTATGTGGATCAAGTCCAACAGTGACGGGAGATATGTCCTTAACCATGAAAACTACGATAAGATATTTCCAAGGGCTTATCGCTTAAAAACCTCCAGTGCTCGTATAGAGTCCTCAAAAGATTCAGGAATTGCGAGCATTAGTGCACTACAATTGGTTGACGCATTTTTAGATGCAAATAAGTGGGTAGACCTCTTTCCAACAATTGTGACGAAAGCTAAAACAATTGAAGTACTCCAAGCAGGAATGTTTGGGACCCAGAGTGGTTGCTTACAACTGATGTATGGGCAAATGCACATTCTTTCACCACTGGTGCTTCCACGAGATTTCTACTTTCTCCGCTTTTGTCAGCAAATCGAAGTTGGCACATGGGTGATTGTTGATGTCTCTTATGATTGCTTTAAAGGAAGTACTACTCAACGATCATGGAGGCTTCCTTCAGGATGCATGATTCAAGACATGCCAAATGGATGCTCTAAGGTAACTTGGGCTGAACACGTGGAAGTCGATGATAAGACACAAACTCATCGGCTCTATAGAGATCTTGTGTGTGGTAGCGTCGCATATGGAGCACAAAGATGGATTGTTACTCTCCAGAGGATGTGTGAAAGATTTGGTTGCTCATTCGATGACGTTTCATCTAGTAGCGAATTTGGAGCAATGTTTGCTATGCCCCAAGGCAGAAGTAGCATAATGAAGCTTTCCCACAGGATGGTTAGGAACTTTTGTGGAATGTTGAGCATGTCAGGAAAGCTTGATTTCCCTCAACTATCAGAAGCGAATAATAGCGGGGTTCGAGTCAATGTTCGTAAAAGCATAGATCCAGGCGAGCCCAGTGGCATGGTCGTCGTTGCTGCTACTTCTCTATGGCTTCCTCTACATTCCCAAGACGTCTTTAACTTCTTCACAAATGAGAAAACAAGAGTGCAGTGGGATGTCCTCTCTAACGGAAATCCAATGAATGTGATTGCACACATTTCAACTGGAGCTCATCCAGGAAACTGTATTTCTATTATTCAGCCTTTTGTACCGACAGAGGGTAATATGCTTCTTTTGCAAGAAAGTTATATAGACACTCTGGGGTCTATGGTTATCTATGCTCCTGTCGAGGTAGCTACTATCAATATAGCAATCGGGGGTGAGGTTGACTCTTCTGACATTCCCATACTTCCCTCGGGGTTCATAATCTCAGATGATGGTCGTCCTGATACTGGGACTTCGAGCAACACAAACCCTGCCAAATCAGGTGGTTCACTCCTTACTGTGGCTTTCCAGATATTGGTTCCCTTCCCCTCACCTTCCCAAGTGCTGAACGTTGAGTCCGTGGCAACTGTCAATACTCTTATTAGTTTGACTGTTCAAAAAATAAAAACTGCTCTCAACTGCGCTGGCTTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

734

Amino Acids

81.67

Weight (kDa)

6.33

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	29 - 83	5.8e-18	Homeodomain
Homeobox_KN	PF05920	48 - 80	5.6e-06	Homeobox KN domain
START	PF01852	253 - 472	3.1e-28	START domain
PDF2_C	PF25797	493 - 730	5.9e-102	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03260 AT3G03260
fragaria_vesca	FvH4_1g27700
malus_domestica	MD09G1277500.v1.1 MD09G1277600.v1.1 MD09G1277900.v1.1 MD17G1271000.v1.1 MD17G1271100.v1.1
prunus_persica	Prupe.3G015300_v2.0.a1
pyrus_communis	pycom09g18690 pycom09g18700 pycom09g18710 pycom17g26940
rosa_chinensis	RchiOBHm_Chr3g0488861
rosa_laevigata	RLG00000022916
rosa_multiflora	Rmu_sc0001208.1_g000028
rosa_roxburghii	Rroxscaffold_6G00393800 Rroxscaffold_6G00393810
rosa_rugosa	Rorug03G0242100 Rorug03G0242200
rosa_samantha	Rh3AG290200 Rh3BG327300 Rh3BG327400 Rh3CG324700 Rh3DG323300
rosa_wichuraiana	Rw3G025720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	498
AatII	GACGTC	1 cut(s)	1698
AccB7I	CCANNNNNTGG	2 cut(s)	1516, 2083
AccBSI	CCGCTC	2 cut(s)	287, 559
AccI	GTMKAC	1 cut(s)	993
AciI	CCGC	8 cut(s)	97, 287, 557, 588, 758, 793, 1144, 1593
AclI	AACGTT	1 cut(s)	2118
AclWI	GGATC	6 cut(s)	295, 308, 588, 803, 821, 1619
AcsI	RAATTY	5 cut(s)	67, 445, 662, 786, 1454
AcuI	CTGAAG	1 cut(s)	1227
AcvI	CACGTG	1 cut(s)	1303
AcyI	GRCGYC	1 cut(s)	1695
AfaI	GTAC	3 cut(s)	1038, 1216, 1833
AfiI	CCNNNNNNNGG	9 cut(s)	13, 154, 359, 374, 1516, 1841, 2015, 2068, 2083
AflIII	ACRYGT	1 cut(s)	1300
AgsI	TTSAA	9 cut(s)	128, 139, 337, 433, 452, 1034, 1259, 1785, 2165
AjnI	CCWGG	4 cut(s)	613, 708, 1627, 1798
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AleI	CACNNNNGTG	1 cut(s)	1175
AloI	GAACNNNNNNTCC	2 cut(s)	2108, 2140
AluBI	AGCT	6 cut(s)	701, 1022, 1504, 1558, 1793, 1919
AluI	AGCT	6 cut(s)	701, 1022, 1504, 1558, 1793, 1919
Alw21I	GWGCWC	4 cut(s)	907, 952, 1378, 1795
Alw26I	GTCTC	3 cut(s)	722, 746, 1195
Alw44I	GTGCAC	1 cut(s)	948
AlwI	GGATC	6 cut(s)	295, 308, 588, 803, 821, 1619
Ama87I	CYCGRG	2 cut(s)	43, 1978
ApaLI	GTGCAC	1 cut(s)	948
ApeKI	GCWGC	2 cut(s)	692, 1658
ApoI	RAATTY	5 cut(s)	67, 445, 662, 786, 1454
AseI	ATTAAT	2 cut(s)	509, 669
AspLEI	GCGC	2 cut(s)	697, 2192
AspS9I	GGNCC	3 cut(s)	4, 365, 1059
AsuC2I	CCSGG	1 cut(s)	155
AsuHPI	GGTGA	7 cut(s)	59, 86, 603, 1101, 1189, 1955, 2091
AsuNHI	GCTAGC	1 cut(s)	697
AvaI	CYCGRG	2 cut(s)	43, 1978
AvaII	GGWCC	3 cut(s)	4, 365, 1059
BaeGI	GKGCMC	1 cut(s)	952
BamHI	GGATCC	1 cut(s)	300
BanII	GRGCYC	2 cut(s)	1638, 1795
BarI	GAAGNNNNNNTAC	2 cut(s)	516, 548
BauI	CACGAG	1 cut(s)	1125
BbrPI	CACGTG	1 cut(s)	1303
BbsI	GAAGAC	1 cut(s)	92
Bbv12I	GWGCWC	4 cut(s)	907, 952, 1378, 1795
BbvI	GCAGC	2 cut(s)	679, 1645
BccI	CCATC	3 cut(s)	1377, 1510, 1994
BcgI	CGANNNNNNTGC	2 cut(s)	1633, 1667
BciT130I	CCWGG	4 cut(s)	615, 710, 1629, 1800
BcnI	CCSGG	1 cut(s)	155
BcoDI	GTCTC	3 cut(s)	722, 746, 1195
BfaI	CTAG	3 cut(s)	591, 698, 1446
BfmI	CTRYAG	1 cut(s)	1339
BglII	AGATCT	1 cut(s)	1345
BisI	GCNGC	4 cut(s)	588, 693, 759, 1659
BlsI	GCNGC	4 cut(s)	589, 694, 760, 1660
BmcAI	AGTACT	2 cut(s)	1038, 1216
Bme1390I	CCNGG	5 cut(s)	155, 615, 710, 1629, 1800
Bme18I	GGWCC	3 cut(s)	4, 365, 1059
BmeT110I	CYCGRG	2 cut(s)	43, 1978
BmgT120I	GGNCC	3 cut(s)	4, 365, 1059
BmiI	GGNNCC	6 cut(s)	40, 224, 302, 1060, 1061, 2088
BmrFI	CCNGG	5 cut(s)	155, 615, 710, 1629, 1800
BmrI	ACTGGG	2 cut(s)	1632, 2025
BmsI	GCATC	4 cut(s)	71, 967, 1238, 1265
BmtI	GCTAGC	1 cut(s)	701
BmuI	ACTGGG	2 cut(s)	1632, 2025
BoxI	GACNNNNGTC	1 cut(s)	654
BpiI	GAAGAC	1 cut(s)	92
BplI	GAGNNNNNCTC	2 cut(s)	1937, 1969
BpmI	CTGGAG	3 cut(s)	883, 1382, 1809
BpuMI	CCSGG	1 cut(s)	155
BsaAI	YACGTR	1 cut(s)	1303
BsaHI	GRCGYC	1 cut(s)	1695
BsaJI	CCNNGG	7 cut(s)	12, 42, 768, 875, 1480, 1977, 2127
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	9 cut(s)	13, 154, 359, 374, 1516, 1841, 2015, 2068, 2083
Bse118I	RCCGGY	1 cut(s)	387
Bse1I	ACTGG	6 cut(s)	304, 900, 1119, 1638, 1792, 2020
Bse3DI	GCAATG	2 cut(s)	642, 1470
BseBI	CCWGG	4 cut(s)	615, 710, 1629, 1800
BseDI	CCNNGG	7 cut(s)	12, 42, 768, 875, 1480, 1977, 2127
BseGI	GGATG	7 cut(s)	610, 1253, 1280, 1410, 1521, 1744, 1795
BseLI	CCNNNNNNNGG	9 cut(s)	13, 154, 359, 374, 1516, 1841, 2015, 2068, 2083
BseMI	GCAATG	2 cut(s)	642, 1470
BseMII	CTCAG	4 cut(s)	122, 249, 717, 2007
BseNI	ACTGG	6 cut(s)	304, 900, 1119, 1638, 1792, 2020
BseSI	GKGCMC	1 cut(s)	952
BseXI	GCAGC	2 cut(s)	679, 1645
BsgI	GTGCAG	1 cut(s)	1751
BsiHKAI	GWGCWC	4 cut(s)	907, 952, 1378, 1795
BsiHKCI	CYCGRG	2 cut(s)	43, 1978
BsiSI	CCGG	3 cut(s)	155, 388, 602
BslFI	GGGAC	2 cut(s)	1072, 2032
BslI	CCNNNNNNNGG	9 cut(s)	13, 154, 359, 374, 1516, 1841, 2015, 2068, 2083
BsmAI	GTCTC	3 cut(s)	722, 746, 1195
BsmFI	GGGAC	2 cut(s)	1072, 2032
BsmI	GAATGC	1 cut(s)	427
BsoBI	CYCGRG	2 cut(s)	43, 1978
Bsp1286I	GDGCHC	5 cut(s)	907, 952, 1378, 1638, 1795
Bsp143I	GATC	8 cut(s)	210, 300, 593, 795, 813, 1226, 1345, 1624
Bsp19I	CCATGG	1 cut(s)	768
BspACI	CCGC	8 cut(s)	97, 287, 557, 588, 758, 793, 1144, 1593
BspCNI	CTCAG	4 cut(s)	121, 250, 718, 2006
BspHI	TCATGA	3 cut(s)	514, 658, 744
BspLI	GGNNCC	6 cut(s)	40, 224, 302, 1060, 1061, 2088
BspOI	GCTAGC	1 cut(s)	701
BspPI	GGATC	6 cut(s)	295, 308, 588, 803, 821, 1619
BsrBI	CCGCTC	2 cut(s)	287, 559
BsrDI	GCAATG	2 cut(s)	642, 1470
BsrFI	RCCGGY	1 cut(s)	387
BsrI	ACTGG	6 cut(s)	304, 900, 1119, 1638, 1792, 2020
BssAI	RCCGGY	1 cut(s)	387
BssECI	CCNNGG	7 cut(s)	12, 42, 768, 875, 1480, 1977, 2127
BssMI	GATC	8 cut(s)	210, 300, 593, 795, 813, 1226, 1345, 1624
BssNI	GRCGYC	1 cut(s)	1695
BssSI	CACGAG	1 cut(s)	1125
BssT1I	CCWWGG	4 cut(s)	12, 768, 875, 1480
Bst2BI	CACGAG	1 cut(s)	1125
Bst2UI	CCWGG	4 cut(s)	615, 710, 1629, 1800
Bst4CI	ACNGT	5 cut(s)	827, 1808, 2068, 2137, 2161
Bst6I	CTCTTC	4 cut(s)	285, 432, 768, 1960
BstACI	GRCGYC	1 cut(s)	1695
BstAPI	GCANNNNNTGC	1 cut(s)	1469
BstBAI	YACGTR	1 cut(s)	1303
BstC8I	GCNNGC	4 cut(s)	699, 940, 1634, 2194
BstDEI	CTNAG	6 cut(s)	108, 258, 653, 726, 1281, 1993
BstDSI	CCRYGG	2 cut(s)	768, 2127
BstENI	CCTNNNNNAGG	1 cut(s)	11
BstF5I	GGATG	7 cut(s)	610, 1253, 1280, 1410, 1521, 1744, 1795
BstHHI	GCGC	2 cut(s)	697, 2192
BstKTI	GATC	8 cut(s)	213, 303, 596, 798, 816, 1229, 1348, 1627
BstMAI	GTCTC	3 cut(s)	722, 746, 1195
BstMBI	GATC	8 cut(s)	210, 300, 593, 795, 813, 1226, 1345, 1624
BstMWI	GCNNNNNNNGC	7 cut(s)	388, 698, 764, 1373, 1469, 1491, 1858
BstNI	CCWGG	4 cut(s)	615, 710, 1629, 1800
BstNSI	RCATGY	2 cut(s)	1267, 1549
BstPAI	GACNNNNGTC	1 cut(s)	654
BstSCI	CCNGG	5 cut(s)	153, 613, 708, 1627, 1798
BstSFI	CTRYAG	1 cut(s)	1339
BstSLI	GKGCMC	1 cut(s)	952
BstV1I	GCAGC	2 cut(s)	679, 1645
BstV2I	GAAGAC	1 cut(s)	92
BstX2I	RGATCY	4 cut(s)	300, 593, 1345, 1624
BstXI	CCANNNNNNTGG	1 cut(s)	1645
BstYI	RGATCY	4 cut(s)	300, 593, 1345, 1624
BtgI	CCRYGG	2 cut(s)	768, 2127
BtsCI	GGATG	7 cut(s)	610, 1253, 1280, 1410, 1521, 1744, 1795
BtsI	GCAGTG	1 cut(s)	1739
BtsIMutI	CAGTG	6 cut(s)	311, 832, 907, 1112, 1645, 1739
Cac8I	GCNNGC	4 cut(s)	699, 940, 1634, 2194
CciI	TCATGA	3 cut(s)	514, 658, 744
CfoI	GCGC	2 cut(s)	697, 2192
Cfr10I	RCCGGY	1 cut(s)	387
Cfr13I	GGNCC	3 cut(s)	4, 365, 1059
CseI	GACGC	2 cut(s)	974, 1351
CsiI	ACCWGGT	1 cut(s)	708
Csp6I	GTAC	3 cut(s)	1037, 1215, 1832
CspCI	CAANNNNNGTGG	2 cut(s)	2032, 2067
CviQI	GTAC	3 cut(s)	1037, 1215, 1832
DdeI	CTNAG	6 cut(s)	108, 258, 653, 726, 1281, 1993
DpnI	GATC	8 cut(s)	212, 302, 595, 797, 815, 1228, 1347, 1626
DpnII	GATC	8 cut(s)	210, 300, 593, 795, 813, 1226, 1345, 1624
DraI	TTTAAA	1 cut(s)	1207
Eam1104I	CTCTTC	4 cut(s)	285, 432, 768, 1960
EarI	CTCTTC	4 cut(s)	285, 432, 768, 1960
Ecl136II	GAGCTC	1 cut(s)	1793
Eco130I	CCWWGG	4 cut(s)	12, 768, 875, 1480
Eco24I	GRGCYC	2 cut(s)	1638, 1795
Eco47I	GGWCC	3 cut(s)	4, 365, 1059
Eco53kI	GAGCTC	1 cut(s)	1793
Eco57I	CTGAAG	1 cut(s)	1227
Eco72I	CACGTG	1 cut(s)	1303
Eco88I	CYCGRG	2 cut(s)	43, 1978
EcoICRI	GAGCTC	1 cut(s)	1793
EcoNI	CCTNNNNNAGG	1 cut(s)	11
EcoO109I	RGGNCCY	2 cut(s)	365, 1059
EcoRI	GAATTC	1 cut(s)	67
EcoRII	CCWGG	4 cut(s)	613, 708, 1627, 1798
EcoT14I	CCWWGG	4 cut(s)	12, 768, 875, 1480
EcoT22I	ATGCAT	1 cut(s)	1253
EcoT38I	GRGCYC	2 cut(s)	1638, 1795
ErhI	CCWWGG	4 cut(s)	12, 768, 875, 1480
FaqI	GGGAC	2 cut(s)	1072, 2032
FauI	CCCGC	1 cut(s)	1586
FauNDI	CATATG	2 cut(s)	583, 1369
FblI	GTMKAC	1 cut(s)	993
Fnu4HI	GCNGC	4 cut(s)	588, 693, 759, 1659
FokI	GGATG	7 cut(s)	617, 1260, 1287, 1417, 1528, 1751, 1782
FriOI	GRGCYC	2 cut(s)	1638, 1795
Fsp4HI	GCNGC	4 cut(s)	588, 693, 759, 1659
FspBI	CTAG	3 cut(s)	591, 698, 1446
GlaI	GCGC	2 cut(s)	696, 2191
GluI	GCNGC	4 cut(s)	588, 693, 759, 1659
GsuI	CTGGAG	3 cut(s)	883, 1382, 1809
HapII	CCGG	3 cut(s)	155, 388, 602
HgaI	GACGC	2 cut(s)	974, 1351
HhaI	GCGC	2 cut(s)	697, 2192
Hin1I	GRCGYC	1 cut(s)	1695
Hin6I	GCGC	2 cut(s)	695, 2190
HinP1I	GCGC	2 cut(s)	695, 2190
HincII	GTYRAC	3 cut(s)	579, 964, 1951
HindII	GTYRAC	3 cut(s)	579, 964, 1951
HindIII	AAGCTT	2 cut(s)	1502, 1556
HinfI	GANTC	9 cut(s)	238, 250, 572, 914, 926, 1255, 1602, 1952, 2123
HpaII	CCGG	3 cut(s)	155, 388, 602
HphI	GGTGA	7 cut(s)	59, 86, 603, 1101, 1189, 1955, 2091
Hpy166II	GTNNAC	6 cut(s)	579, 950, 964, 994, 1951, 2057
Hpy188I	TCNGA	4 cut(s)	649, 1579, 1960, 1996
Hpy8I	GTNNAC	6 cut(s)	579, 950, 964, 994, 1951, 2057
Hpy99I	CGWCG	3 cut(s)	174, 1367, 1655
HpyAV	CCTTC	5 cut(s)	17, 542, 1251, 2101, 2112
HpyCH4III	ACNGT	5 cut(s)	827, 1808, 2068, 2137, 2161
HpyCH4IV	ACGT	5 cut(s)	169, 1302, 1437, 1695, 2118
HpyF10VI	GCNNNNNNNGC	7 cut(s)	388, 698, 764, 1373, 1469, 1491, 1858
HpyF3I	CTNAG	6 cut(s)	108, 258, 653, 726, 1281, 1993
HpySE526I	ACGT	5 cut(s)	169, 1302, 1437, 1695, 2118
Hsp92I	GRCGYC	1 cut(s)	1695
HspAI	GCGC	2 cut(s)	695, 2190
KflI	GGGWCCC	1 cut(s)	1059
Kzo9I	GATC	8 cut(s)	210, 300, 593, 795, 813, 1226, 1345, 1624
LmnI	GCTCC	5 cut(s)	38, 1373, 1460, 1790, 1909
Lsp1109I	GCAGC	2 cut(s)	679, 1645
LweI	GCATC	4 cut(s)	71, 967, 1238, 1265
MabI	ACCWGGT	1 cut(s)	708
MaeI	CTAG	3 cut(s)	591, 698, 1446
MaeII	ACGT	5 cut(s)	169, 1302, 1437, 1695, 2118
MaeIII	GTNAC	5 cut(s)	683, 827, 1012, 1285, 1390
MalI	GATC	8 cut(s)	212, 302, 595, 797, 815, 1228, 1347, 1626
MbiI	CCGCTC	2 cut(s)	287, 559
MboI	GATC	8 cut(s)	210, 300, 593, 795, 813, 1226, 1345, 1624
MboII	GAAGA	7 cut(s)	97, 272, 349, 449, 785, 1699, 1947
MfeI	CAATTG	4 cut(s)	428, 956, 1008, 1029
MflI	RGATCY	4 cut(s)	300, 593, 1345, 1624
MhlI	GDGCHC	5 cut(s)	907, 952, 1378, 1638, 1795
MlyI	GAGTC	6 cut(s)	232, 244, 923, 1611, 1946, 2132
MmeI	TCCRAC	2 cut(s)	846, 1028
Mph1103I	ATGCAT	1 cut(s)	1253
MseI	TTAA	9 cut(s)	324, 509, 623, 669, 846, 890, 1206, 1701, 2203
MslI	CAYNNNNRTG	2 cut(s)	1175, 1381
MspA1I	CMGCKG	1 cut(s)	758
MspI	CCGG	3 cut(s)	155, 388, 602
MspR9I	CCNGG	5 cut(s)	155, 615, 710, 1629, 1800
MunI	CAATTG	4 cut(s)	428, 956, 1008, 1029
Mva1269I	GAATGC	1 cut(s)	427
MvaI	CCWGG	4 cut(s)	615, 710, 1629, 1800
MwoI	GCNNNNNNNGC	7 cut(s)	388, 698, 764, 1373, 1469, 1491, 1858
NciI	CCSGG	1 cut(s)	155
NcoI	CCATGG	1 cut(s)	768
NdeI	CATATG	2 cut(s)	583, 1369
NdeII	GATC	8 cut(s)	210, 300, 593, 795, 813, 1226, 1345, 1624
NheI	GCTAGC	1 cut(s)	697
NlaIV	GGNNCC	6 cut(s)	40, 224, 302, 1060, 1061, 2088
NmuCI	GTSAC	2 cut(s)	827, 1012
NsiI	ATGCAT	1 cut(s)	1253
NspI	RCATGY	2 cut(s)	1267, 1549
OliI	CACNNNNGTG	1 cut(s)	1175
PagI	TCATGA	3 cut(s)	514, 658, 744
PcsI	WCGNNNNNNNCGW	2 cut(s)	1308, 2124
PctI	GAATGC	1 cut(s)	427
PfeI	GAWTC	3 cut(s)	572, 926, 1255
PflMI	CCANNNNNTGG	2 cut(s)	1516, 2083
PfoI	TCCNGGA	1 cut(s)	1798
PkrI	GCNGC	4 cut(s)	589, 694, 760, 1660
PleI	GAGTC	6 cut(s)	232, 244, 922, 1610, 1946, 2131
PmaCI	CACGTG	1 cut(s)	1303
PmlI	CACGTG	1 cut(s)	1303
PpsI	GAGTC	6 cut(s)	232, 244, 922, 1610, 1946, 2131
Ppu21I	YACGTR	1 cut(s)	1303
PpuMI	RGGWCCY	2 cut(s)	365, 1059
PshAI	GACNNNNGTC	1 cut(s)	654
PshBI	ATTAAT	2 cut(s)	509, 669
PsiI	TTATAA	1 cut(s)	498
Psp124BI	GAGCTC	1 cut(s)	1795
Psp1406I	AACGTT	1 cut(s)	2118
Psp5II	RGGWCCY	2 cut(s)	365, 1059
Psp6I	CCWGG	4 cut(s)	613, 708, 1627, 1798
PspCI	CACGTG	1 cut(s)	1303
PspGI	CCWGG	4 cut(s)	613, 708, 1627, 1798
PspN4I	GGNNCC	6 cut(s)	40, 224, 302, 1060, 1061, 2088
PspPI	GGNCC	3 cut(s)	4, 365, 1059
PspPPI	RGGWCCY	2 cut(s)	365, 1059
PsuI	RGATCY	4 cut(s)	300, 593, 1345, 1624
RsaI	GTAC	3 cut(s)	1038, 1216, 1833
RsaNI	GTAC	3 cut(s)	1037, 1215, 1832
RseI	CAYNNNNRTG	2 cut(s)	1175, 1381
SacI	GAGCTC	1 cut(s)	1795
SaqAI	TTAA	9 cut(s)	324, 509, 623, 669, 846, 890, 1206, 1701, 2203
SatI	GCNGC	4 cut(s)	588, 693, 759, 1659
Sau3AI	GATC	8 cut(s)	210, 300, 593, 795, 813, 1226, 1345, 1624
Sau96I	GGNCC	3 cut(s)	4, 365, 1059
ScaI	AGTACT	2 cut(s)	1038, 1216
SchI	GAGTC	6 cut(s)	232, 244, 923, 1611, 1946, 2132
ScrFI	CCNGG	5 cut(s)	155, 615, 710, 1629, 1800
SduI	GDGCHC	5 cut(s)	907, 952, 1378, 1638, 1795
SexAI	ACCWGGT	1 cut(s)	708
SfaNI	GCATC	4 cut(s)	71, 967, 1238, 1265
SfcI	CTRYAG	1 cut(s)	1339
SinI	GGWCC	3 cut(s)	4, 365, 1059
SmiMI	CAYNNNNRTG	2 cut(s)	1175, 1381
SsiI	CCGC	8 cut(s)	97, 287, 557, 588, 758, 793, 1144, 1593
SspMI	CTAG	3 cut(s)	591, 698, 1446
SstI	GAGCTC	1 cut(s)	1795
StyD4I	CCNGG	5 cut(s)	153, 613, 708, 1627, 1798
StyI	CCWWGG	4 cut(s)	12, 768, 875, 1480
TaaI	ACNGT	5 cut(s)	827, 1808, 2068, 2137, 2161
TaiI	ACGT	5 cut(s)	172, 1305, 1440, 1698, 2121
TaqI	TCGA	8 cut(s)	65, 283, 1161, 1311, 1431, 1600, 1911, 2024
TatI	WGTACW	2 cut(s)	1036, 1214
TauI	GCSGC	2 cut(s)	590, 761
TfiI	GAWTC	3 cut(s)	572, 926, 1255
Tru1I	TTAA	9 cut(s)	324, 509, 623, 669, 846, 890, 1206, 1701, 2203
Tru9I	TTAA	9 cut(s)	324, 509, 623, 669, 846, 890, 1206, 1701, 2203
TscAI	CASTG	6 cut(s)	311, 832, 907, 1119, 1645, 1739
TseFI	GTSAC	2 cut(s)	827, 1012
TseI	GCWGC	2 cut(s)	692, 1658
Tsp45I	GTSAC	2 cut(s)	827, 1012
TspGWI	ACGGA	2 cut(s)	1767, 2116
TspRI	CASTG	6 cut(s)	311, 832, 907, 1119, 1645, 1739
Van91I	CCANNNNNTGG	2 cut(s)	1516, 2083
VneI	GTGCAC	1 cut(s)	948
VpaK11BI	GGWCC	3 cut(s)	4, 365, 1059
VspI	ATTAAT	2 cut(s)	509, 669
XagI	CCTNNNNNAGG	1 cut(s)	11
XapI	RAATTY	5 cut(s)	67, 445, 662, 786, 1454
XceI	RCATGY	2 cut(s)	1267, 1549
XmiI	GTMKAC	1 cut(s)	993
XspI	CTAG	3 cut(s)	591, 698, 1446
ZraI	GACGTC	1 cut(s)	1696
ZrmI	AGTACT	2 cut(s)	1038, 1216
Zsp2I	ATGCAT	1 cut(s)	1253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.