Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006882

Physical Location & Seq

Genomic Coordinates Forward (+)

35416146 .. 35425520

Gene Structure 9375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1277500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGATGAGAAAGCCGTCAGCGCTGCTCGCCGCGCCGGAGCTGAGACAGACACCTTCAAGAAAGCAACTGCCGGGACAAATAAAGCTGCCCCCAGACAACATTTCTCGTGAAATGGAGCTTTCGGGAAATGGTGGAGCTTCAAGTGATGAAGCATCGAATTCCCGCAGAGGCAACAAAAAATATCATCGCCATACTAATGAGCAGATACAACGACTCGAAGAACTTTTCAAGCACTGTGCCCACCCGGATGACAGCCAACGTCAACAGCTGGGCAGGGAATTGGGCCTTGAACCAAAACAAATCAAGTTCTGGTTTCAGAACAAAAGAACACAGACCAAGGCTCAAAGTGAGAGAGCAGACAACACTATTCTTCGTCAAGATAATGAAAGGATTCAATGTGAAAACTATGCGATGAGAGAGGCCTTAAAGAATGTCAGTTGCCCAACCTGTGGTGGTCCACCGTTTGGAGAAGAAGAGCGGCAGATCAATCTGCAGAGCCTTCAGCTGGAGAATGCCTATTTGAAAGAAGAGCATGATAAGGTAGCCAGCCTTCTTTCCAAATATATTGGGAAACCACTATCACAAATTGAATCGCTTGCGTCTGTAGTTGGATCCACACTGGATTTATCACCAGGATGTTCGATCAACCAAGGGATTATTGGCAGTCCACCCCTTGATCTCAATCTTACTAGTCCTACATTTTCTTACCAATTACAAGAAATCCCTGAAATGGAAAAGACACTCATGGCAGACATTGCTGCCAGTGCCTTGGAAGAACTGGTCAAACTTTTTCAGATCGATGAGCCCTTATGGGTGAAATCCACAGCTTATGGACGATATTTCCTCAACCGTGGCAACTATGATAAGATATTTCCTAGAACCAATCAATTCAAAACCTCTAGTGCGCGTATCGAATCTTCAAAAGATTCAGGAGTAGTGACCATTAGTGCAGCAACCTTGGTTGACATGTTCTTAGACTCAAATAAATGGGAAGAACTCTTTCCCACAATCGTTACAAAAGCCAAGACAATTGAAGTACTTGAAAGTGGAATGATAGGAAATCGGAGTGGTTGCCTACTGCTGATGTATGAACAAATGCACATTCTCTCACCTTTGGTGCTGCCACGGGATTTCTACTTTCTTCGTTATTGTCAGCAGATTGAGCTAGGCACATGGGTCGTTGTTGATGTTTCCCACAAATTCCCCAAAGAGAGTTCTTCAAATCAATCACGATCTTGGCGGCTTCCTTCAGGTTGTTTGATCAAAGATATGACTAATGGATGCTCCAAGGTAACTTGGATTGAGCATGTGGAGGTTGATGACAAGACACAAACTCATCGGCTCTACAGAGATCTTATATGTAGTAGTGTTGCATATGGAGCAGAGAGATGGATCATTACTCTTAAGAGGATGTGTGAGAGATTCGATTGCTTGATGGATGAAGTTGAATCTACTTGTGAATTTGGAGGAGTGGTAAGTTCGCCTGAAGGCAAGAGGAGTGTAATGAAGCTCTCTCAGAGAATGGTGAAGAACTTTTGTGGAATGCTGAGCATGGCAGGTAAACTTGACTTCCCTCAGTTGTCCGAGGTGAACAACAGTGGGGTTCGAGTCTCTGTTCGTAAGAGTGCAGAATCAGGACAGCCCCATGGCATGATCGTCAGTGTTGCTACTTCTCTTTGGCTTCCTCTACCCTCCGAAACTGTCTATAACTTCTTCAGAGATGAGAAAAATAGAGTTCAGTGGGATGTTCTGTCTAATGGAAATCCAGTGCATGAGATTGCAAACATTTCAACTGGAACGCATCCAGGAAACTGTATATCTGTCATTCGGGTACCTTTCATCCCCACCGAGAATAACATGCTGATGCTTCAAGAGAGTTACACAGACCCTTTGGGATCCTTGTTCGTATATGCTCCAGTCGATGTACCAGCTCTTAACGTAGCAGTAAGCGGCGAGGACTCTTCCAACATACCTATCCTCCCATCGGGGTTTGTGATATCAGGCGATGGCCGTGCTGAAGTAACTGGGGATTCAGGCCATTCCACGGCAGGTGGTTCACTTCTCACAGTGGCTTTCCAGATATTGGTTTCCAGCCCGTCAACTTCAAAGCAGATGAACATGGAGTCAGTGGCAACTGTCAACACTCTCATCAGTTCCACCGTTCAAAAAATCAAAGTTGCTCTCAACTGCTCGAGCTTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

735

Amino Acids

81.65

Weight (kDa)

6.09

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	59 - 113	2.5e-17	Homeodomain
START	PF01852	252 - 474	1.6e-34	START domain
PDF2_C	PF25797	494 - 730	4.7e-108	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03260 AT3G03260
fragaria_vesca	FvH4_1g27700
malus_domestica	MD09G1277500.v1.1 MD09G1277600.v1.1 MD09G1277900.v1.1 MD17G1271000.v1.1 MD17G1271100.v1.1
prunus_persica	Prupe.3G015300_v2.0.a1
pyrus_communis	pycom09g18690 pycom09g18700 pycom09g18710 pycom17g26940
rosa_chinensis	RchiOBHm_Chr3g0488861
rosa_laevigata	RLG00000022916
rosa_multiflora	Rmu_sc0001208.1_g000028
rosa_roxburghii	Rroxscaffold_6G00393800 Rroxscaffold_6G00393810
rosa_rugosa	Rorug03G0242100 Rorug03G0242200
rosa_samantha	Rh3AG290200 Rh3BG327300 Rh3BG327400 Rh3CG324700 Rh3DG323300
rosa_wichuraiana	Rw3G025720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2039
Acc36I	ACCTGC	2 cut(s)	1547, 2039
Acc65I	GGTACC	1 cut(s)	1831
AccB1I	GGYRCC	1 cut(s)	1831
AccB7I	CCANNNNNTGG	3 cut(s)	449, 464, 2083
AccBSI	CCGCTC	1 cut(s)	478
AccII	CGCG	2 cut(s)	32, 907
AciI	CCGC	5 cut(s)	30, 163, 478, 1240, 1950
AclWI	GGATC	5 cut(s)	606, 619, 1400, 1890, 1903
AcoI	YGGCCR	1 cut(s)	2008
AcsI	RAATTY	3 cut(s)	157, 1199, 1460
AcuI	CTGAAG	5 cut(s)	485, 1233, 1506, 1699, 2037
AfaI	GTAC	3 cut(s)	1038, 1833, 1926
AfeI	AGCGCT	1 cut(s)	21
AfiI	CCNNNNNNNGG	7 cut(s)	449, 464, 505, 730, 1984, 2044, 2083
AflII	CTTAAG	1 cut(s)	1403
AflIII	ACRYGT	1 cut(s)	966
AhlI	ACTAGT	1 cut(s)	689
AjnI	CCWGG	2 cut(s)	631, 1804
Alw26I	GTCTC	2 cut(s)	37, 1615
AlwI	GGATC	5 cut(s)	606, 619, 1400, 1890, 1903
Ama87I	CYCGRG	1 cut(s)	2191
Aor51HI	AGCGCT	1 cut(s)	21
AoxI	GGCC	4 cut(s)	283, 420, 2008, 2035
ApeKI	GCWGC	5 cut(s)	22, 85, 758, 950, 1120
ApoI	RAATTY	3 cut(s)	157, 1199, 1460
Asp700I	GAANNNNTTC	2 cut(s)	390, 999
Asp718I	GGTACC	1 cut(s)	1831
AspLEI	GCGC	3 cut(s)	22, 34, 907
AspS9I	GGNCC	2 cut(s)	283, 455
AsuC2I	CCSGG	2 cut(s)	72, 245
AsuHPI	GGTGA	5 cut(s)	621, 826, 1101, 1537, 1600
AvaI	CYCGRG	1 cut(s)	2191
AvaII	GGWCC	1 cut(s)	455
BaeGI	GKGCMC	1 cut(s)	241
BamHI	GGATCC	2 cut(s)	611, 1895
BanI	GGYRCC	1 cut(s)	1831
BanII	GRGCYC	1 cut(s)	807
BarI	GAAGNNNNNNTAC	4 cut(s)	534, 566, 901, 933
BauI	CACGAG	1 cut(s)	105
BbvI	GCAGC	5 cut(s)	9, 72, 745, 962, 1107
BccI	CCATC	4 cut(s)	1383, 1429, 1990, 2000
BceAI	ACGGC	2 cut(s)	1995, 2061
BcgI	CGANNNNNNTGC	4 cut(s)	1159, 1193, 1994, 2028
BciT130I	CCWGG	2 cut(s)	633, 1806
BclI	TGATCA	1 cut(s)	1260
BcnI	CCSGG	2 cut(s)	72, 245
BcoDI	GTCTC	2 cut(s)	37, 1615
BcuI	ACTAGT	1 cut(s)	689
BfaI	CTAG	4 cut(s)	690, 876, 900, 1166
BfmI	CTRYAG	3 cut(s)	491, 603, 1345
BfoI	RGCGCY	1 cut(s)	23
BfrI	CTTAAG	1 cut(s)	1403
BfuAI	ACCTGC	2 cut(s)	1547, 2039
BglII	AGATCT	1 cut(s)	1351
BisI	GCNGC	9 cut(s)	23, 30, 86, 479, 759, 951, 1121, 1241, 1951
BlpI	GCTNAGC	1 cut(s)	1547
BlsI	GCNGC	9 cut(s)	24, 31, 87, 480, 760, 952, 1122, 1242, 1952
BmcAI	AGTACT	1 cut(s)	1038
Bme1390I	CCNGG	4 cut(s)	72, 245, 633, 1806
Bme18I	GGWCC	1 cut(s)	455
BmeT110I	CYCGRG	1 cut(s)	2191
BmgT120I	GGNCC	2 cut(s)	283, 455
BmiI	GGNNCC	3 cut(s)	613, 1833, 1897
BmrFI	CCNGG	4 cut(s)	72, 245, 633, 1806
BmrI	ACTGGG	1 cut(s)	2034
BmsI	GCATC	4 cut(s)	161, 1271, 1810, 1854
BmuI	ACTGGG	1 cut(s)	2034
BpmI	CTGGAG	2 cut(s)	527, 1899
Bpu1102I	GCTNAGC	1 cut(s)	1547
BpuMI	CCSGG	2 cut(s)	72, 245
Bsa29I	ATCGAT	1 cut(s)	798
BsaBI	GATNNNNATC	1 cut(s)	681
BsaXI	ACNNNNNCTCC	4 cut(s)	1458, 1488, 1962, 1992
Bsc4I	CCNNNNNNNGG	7 cut(s)	449, 464, 505, 730, 1984, 2044, 2083
Bse1I	ACTGG	7 cut(s)	624, 762, 783, 1766, 1798, 1916, 2029
Bse3DI	GCAATG	1 cut(s)	753
Bse8I	GATNNNNATC	1 cut(s)	681
BseBI	CCWGG	2 cut(s)	633, 1806
BseCI	ATCGAT	1 cut(s)	798
BseGI	GGATG	8 cut(s)	253, 641, 1286, 1416, 1444, 1750, 1801, 1839
BseJI	GATNNNNATC	1 cut(s)	681
BseLI	CCNNNNNNNGG	7 cut(s)	449, 464, 505, 730, 1984, 2044, 2083
BseMI	GCAATG	1 cut(s)	753
BseMII	CTCAG	4 cut(s)	32, 1529, 1538, 1589
BseNI	ACTGG	7 cut(s)	624, 762, 783, 1766, 1798, 1916, 2029
BseRI	GAGGAG	2 cut(s)	1482, 1510
BseSI	GKGCMC	1 cut(s)	241
BseXI	GCAGC	5 cut(s)	9, 72, 745, 962, 1107
BseYI	CCCAGC	1 cut(s)	268
BsgI	GTGCAG	2 cut(s)	969, 1647
Bsh1236I	CGCG	2 cut(s)	32, 907
BshFI	GGCC	4 cut(s)	285, 422, 2010, 2037
BshNI	GGYRCC	1 cut(s)	1831
BshVI	ATCGAT	1 cut(s)	798
BsiHKCI	CYCGRG	1 cut(s)	2191
BsiSI	CCGG	3 cut(s)	35, 71, 245
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	7 cut(s)	449, 464, 505, 730, 1984, 2044, 2083
BsmAI	GTCTC	2 cut(s)	37, 1615
BsmFI	GGGAC	1 cut(s)	87
BsmI	GAATGC	2 cut(s)	517, 1548
BsnI	GGCC	4 cut(s)	285, 422, 2010, 2037
BsoBI	CYCGRG	1 cut(s)	2191
Bsp1286I	GDGCHC	2 cut(s)	241, 807
Bsp1720I	GCTNAGC	1 cut(s)	1547
Bsp19I	CCATGG	1 cut(s)	1645
BspACI	CCGC	5 cut(s)	30, 163, 478, 1240, 1950
BspANI	GGCC	4 cut(s)	285, 422, 2010, 2037
BspCNI	CTCAG	4 cut(s)	33, 1528, 1539, 1588
BspDI	ATCGAT	1 cut(s)	798
BspFNI	CGCG	2 cut(s)	32, 907
BspLI	GGNNCC	3 cut(s)	613, 1833, 1897
BspMAI	CTGCAG	1 cut(s)	495
BspMI	ACCTGC	2 cut(s)	1547, 2039
BspPI	GGATC	5 cut(s)	606, 619, 1400, 1890, 1903
BspQI	GCTCTTC	2 cut(s)	468, 522
BspT107I	GGYRCC	1 cut(s)	1831
BspTI	CTTAAG	1 cut(s)	1403
BsrBI	CCGCTC	1 cut(s)	478
BsrDI	GCAATG	1 cut(s)	753
BsrI	ACTGG	7 cut(s)	624, 762, 783, 1766, 1798, 1916, 2029
BssSI	CACGAG	1 cut(s)	105
BssT1I	CCWWGG	6 cut(s)	336, 649, 768, 957, 1287, 1645
Bst2BI	CACGAG	1 cut(s)	105
Bst2UI	CCWGG	2 cut(s)	633, 1806
Bst4CI	ACNGT	9 cut(s)	236, 462, 851, 1598, 1702, 1814, 2068, 2137, 2161
Bst6I	CTCTTC	3 cut(s)	468, 522, 1966
BstAFI	CTTAAG	1 cut(s)	1403
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstC8I	GCNNGC	3 cut(s)	27, 547, 597
BstDEI	CTNAG	5 cut(s)	41, 973, 1515, 1547, 1575
BstDSI	CCRYGG	4 cut(s)	850, 1124, 1645, 2043
BstF5I	GGATG	8 cut(s)	253, 641, 1286, 1416, 1444, 1750, 1801, 1839
BstFNI	CGCG	2 cut(s)	32, 907
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	3 cut(s)	22, 34, 907
BstMAI	GTCTC	2 cut(s)	37, 1615
BstMWI	GCNNNNNNNGC	7 cut(s)	19, 26, 31, 755, 764, 1162, 1379
BstNI	CCWGG	2 cut(s)	633, 1806
BstNSI	RCATGY	3 cut(s)	970, 1310, 1861
BstSCI	CCNGG	4 cut(s)	70, 243, 631, 1804
BstSFI	CTRYAG	3 cut(s)	491, 603, 1345
BstSLI	GKGCMC	1 cut(s)	241
BstUI	CGCG	2 cut(s)	32, 907
BstV1I	GCAGC	5 cut(s)	9, 72, 745, 962, 1107
BstX2I	RGATCY	3 cut(s)	611, 1351, 1895
BstXI	CCANNNNNNTGG	1 cut(s)	769
BstYI	RGATCY	3 cut(s)	611, 1351, 1895
Bsu15I	ATCGAT	1 cut(s)	798
BsuRI	GGCC	4 cut(s)	285, 422, 2010, 2037
BsuTUI	ATCGAT	1 cut(s)	798
BtgI	CCRYGG	4 cut(s)	850, 1124, 1645, 2043
BtgZI	GCGATG	3 cut(s)	170, 425, 2019
BtsCI	GGATG	8 cut(s)	253, 641, 1286, 1416, 1444, 1750, 1801, 1839
BtsIMutI	CAGTG	9 cut(s)	232, 617, 769, 1603, 1666, 1745, 1773, 2073, 2133
BveI	ACCTGC	2 cut(s)	1547, 2039
Cac8I	GCNNGC	3 cut(s)	27, 547, 597
CfoI	GCGC	3 cut(s)	22, 34, 907
Cfr13I	GGNCC	2 cut(s)	283, 455
ClaI	ATCGAT	1 cut(s)	798
CseI	GACGC	1 cut(s)	588
Csp6I	GTAC	3 cut(s)	1037, 1832, 1925
CviQI	GTAC	3 cut(s)	1037, 1832, 1925
DdeI	CTNAG	5 cut(s)	41, 973, 1515, 1547, 1575
EaeI	YGGCCR	1 cut(s)	2008
Eam1104I	CTCTTC	3 cut(s)	468, 522, 1966
EarI	CTCTTC	3 cut(s)	468, 522, 1966
Eco130I	CCWWGG	6 cut(s)	336, 649, 768, 957, 1287, 1645
Eco147I	AGGCCT	1 cut(s)	422
Eco24I	GRGCYC	1 cut(s)	807
Eco32I	GATATC	1 cut(s)	1998
Eco47I	GGWCC	1 cut(s)	455
Eco47III	AGCGCT	1 cut(s)	21
Eco57I	CTGAAG	5 cut(s)	485, 1233, 1506, 1699, 2037
Eco88I	CYCGRG	1 cut(s)	2191
EcoRI	GAATTC	1 cut(s)	157
EcoRII	CCWGG	2 cut(s)	631, 1804
EcoRV	GATATC	1 cut(s)	1998
EcoT14I	CCWWGG	6 cut(s)	336, 649, 768, 957, 1287, 1645
EcoT38I	GRGCYC	1 cut(s)	807
ErhI	CCWWGG	6 cut(s)	336, 649, 768, 957, 1287, 1645
FaqI	GGGAC	1 cut(s)	87
FauI	CCCGC	1 cut(s)	170
FauNDI	CATATG	1 cut(s)	1375
FbaI	TGATCA	1 cut(s)	1260
Fnu4HI	GCNGC	9 cut(s)	23, 30, 86, 479, 759, 951, 1121, 1241, 1951
FokI	GGATG	8 cut(s)	260, 648, 1293, 1423, 1451, 1757, 1788, 1826
FriOI	GRGCYC	1 cut(s)	807
Fsp4HI	GCNGC	9 cut(s)	23, 30, 86, 479, 759, 951, 1121, 1241, 1951
FspBI	CTAG	4 cut(s)	690, 876, 900, 1166
GlaI	GCGC	3 cut(s)	21, 33, 906
GluI	GCNGC	9 cut(s)	23, 30, 86, 479, 759, 951, 1121, 1241, 1951
GsaI	CCCAGC	1 cut(s)	272
GsuI	CTGGAG	2 cut(s)	527, 1899
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	4 cut(s)	285, 422, 2010, 2037
HapII	CCGG	3 cut(s)	35, 71, 245
HgaI	GACGC	1 cut(s)	588
HhaI	GCGC	3 cut(s)	22, 34, 907
Hin6I	GCGC	3 cut(s)	20, 32, 905
HinP1I	GCGC	3 cut(s)	20, 32, 905
HincII	GTYRAC	4 cut(s)	263, 964, 2100, 2140
HindII	GTYRAC	4 cut(s)	263, 964, 2100, 2140
HpaII	CCGG	3 cut(s)	35, 71, 245
HphI	GGTGA	5 cut(s)	621, 826, 1101, 1537, 1600
Hpy166II	GTNNAC	9 cut(s)	263, 458, 668, 964, 1562, 1591, 2057, 2100, 2140
Hpy188I	TCNGA	7 cut(s)	318, 795, 1065, 1518, 1585, 1696, 1718
Hpy188III	TCNNGA	9 cut(s)	57, 107, 123, 377, 930, 1230, 1635, 1871, 2077
Hpy8I	GTNNAC	9 cut(s)	263, 458, 668, 964, 1562, 1591, 2057, 2100, 2140
HpyAV	CCTTC	5 cut(s)	63, 509, 560, 1257, 1481
HpyCH4III	ACNGT	9 cut(s)	236, 462, 851, 1598, 1702, 1814, 2068, 2137, 2161
HpyCH4IV	ACGT	2 cut(s)	259, 1938
HpyCH4V	TGCA	7 cut(s)	493, 950, 1099, 1373, 1628, 1771, 1781
HpyF10VI	GCNNNNNNNGC	7 cut(s)	19, 26, 31, 755, 764, 1162, 1379
HpyF3I	CTNAG	5 cut(s)	41, 973, 1515, 1547, 1575
HpySE526I	ACGT	2 cut(s)	259, 1938
HspAI	GCGC	3 cut(s)	20, 32, 905
KpnI	GGTACC	1 cut(s)	1835
Ksp22I	TGATCA	1 cut(s)	1260
LguI	GCTCTTC	2 cut(s)	468, 522
LmnI	GCTCC	6 cut(s)	37, 115, 134, 1289, 1379, 1918
Lsp1109I	GCAGC	5 cut(s)	9, 72, 745, 962, 1107
LweI	GCATC	4 cut(s)	161, 1271, 1810, 1854
MaeI	CTAG	4 cut(s)	690, 876, 900, 1166
MaeII	ACGT	2 cut(s)	259, 1938
MaeIII	GTNAC	5 cut(s)	937, 1012, 1291, 1877, 2020
MbiI	CCGCTC	1 cut(s)	478
MfeI	CAATTG	1 cut(s)	1029
MflI	RGATCY	3 cut(s)	611, 1351, 1895
MhlI	GDGCHC	2 cut(s)	241, 807
MluCI	AATT	8 cut(s)	157, 278, 585, 710, 887, 1029, 1199, 1460
MlyI	GAGTC	5 cut(s)	207, 971, 1617, 1952, 2132
MmeI	TCCRAC	2 cut(s)	589, 1989
MroXI	GAANNNNTTC	2 cut(s)	390, 999
MseI	TTAA	4 cut(s)	425, 1404, 1935, 2203
MslI	CAYNNNNRTG	4 cut(s)	195, 246, 634, 1862
MspA1I	CMGCKG	2 cut(s)	268, 505
MspCI	CTTAAG	1 cut(s)	1403
MspI	CCGG	3 cut(s)	35, 71, 245
MspR9I	CCNGG	4 cut(s)	72, 245, 633, 1806
MunI	CAATTG	1 cut(s)	1029
Mva1269I	GAATGC	2 cut(s)	517, 1548
MvaI	CCWGG	2 cut(s)	633, 1806
MvnI	CGCG	2 cut(s)	32, 907
MwoI	GCNNNNNNNGC	7 cut(s)	19, 26, 31, 755, 764, 1162, 1379
NciI	CCSGG	2 cut(s)	72, 245
NcoI	CCATGG	1 cut(s)	1645
NdeI	CATATG	1 cut(s)	1375
NlaIV	GGNNCC	3 cut(s)	613, 1833, 1897
NmuCI	GTSAC	1 cut(s)	937
NspI	RCATGY	3 cut(s)	970, 1310, 1861
PaeR7I	CTCGAG	1 cut(s)	2191
PaqCI	CACCTGC	1 cut(s)	2039
PceI	AGGCCT	1 cut(s)	422
PciI	ACATGT	1 cut(s)	966
PciSI	GCTCTTC	2 cut(s)	468, 522
PctI	GAATGC	2 cut(s)	517, 1548
PdmI	GAANNNNTTC	2 cut(s)	390, 999
PfeI	GAWTC	8 cut(s)	391, 590, 914, 926, 1422, 1448, 1631, 2030
PflMI	CCANNNNNTGG	3 cut(s)	449, 464, 2083
PfoI	TCCNGGA	1 cut(s)	1804
PkrI	GCNGC	9 cut(s)	24, 31, 87, 480, 760, 952, 1122, 1242, 1952
PleI	GAGTC	5 cut(s)	207, 971, 1616, 1952, 2131
PpsI	GAGTC	5 cut(s)	207, 971, 1616, 1952, 2131
PscI	ACATGT	1 cut(s)	966
Psp6I	CCWGG	2 cut(s)	631, 1804
PspFI	CCCAGC	1 cut(s)	268
PspGI	CCWGG	2 cut(s)	631, 1804
PspN4I	GGNNCC	3 cut(s)	613, 1833, 1897
PspPI	GGNCC	2 cut(s)	283, 455
PspXI	VCTCGAGB	1 cut(s)	2191
PstI	CTGCAG	1 cut(s)	495
PsuI	RGATCY	3 cut(s)	611, 1351, 1895
PvuII	CAGCTG	2 cut(s)	268, 505
RsaI	GTAC	3 cut(s)	1038, 1833, 1926
RsaNI	GTAC	3 cut(s)	1037, 1832, 1925
RseI	CAYNNNNRTG	4 cut(s)	195, 246, 634, 1862
SapI	GCTCTTC	2 cut(s)	468, 522
SaqAI	TTAA	4 cut(s)	425, 1404, 1935, 2203
SatI	GCNGC	9 cut(s)	23, 30, 86, 479, 759, 951, 1121, 1241, 1951
Sau96I	GGNCC	2 cut(s)	283, 455
ScaI	AGTACT	1 cut(s)	1038
SchI	GAGTC	5 cut(s)	207, 971, 1617, 1952, 2132
ScrFI	CCNGG	4 cut(s)	72, 245, 633, 1806
SduI	GDGCHC	2 cut(s)	241, 807
SfaNI	GCATC	4 cut(s)	161, 1271, 1810, 1854
SfcI	CTRYAG	3 cut(s)	491, 603, 1345
Sfr274I	CTCGAG	1 cut(s)	2191
SinI	GGWCC	1 cut(s)	455
SlaI	CTCGAG	1 cut(s)	2191
SmiMI	CAYNNNNRTG	4 cut(s)	195, 246, 634, 1862
SmlI	CTYRAG	2 cut(s)	1403, 2191
SmoI	CTYRAG	2 cut(s)	1403, 2191
SpeI	ACTAGT	1 cut(s)	689
Sse9I	AATT	8 cut(s)	157, 278, 585, 710, 887, 1029, 1199, 1460
SseBI	AGGCCT	1 cut(s)	422
SsiI	CCGC	5 cut(s)	30, 163, 478, 1240, 1950
SspMI	CTAG	4 cut(s)	690, 876, 900, 1166
StuI	AGGCCT	1 cut(s)	422
StyD4I	CCNGG	4 cut(s)	70, 243, 631, 1804
StyI	CCWWGG	6 cut(s)	336, 649, 768, 957, 1287, 1645
TaaI	ACNGT	9 cut(s)	236, 462, 851, 1598, 1702, 1814, 2068, 2137, 2161
TaiI	ACGT	2 cut(s)	262, 1941
TaqI	TCGA	9 cut(s)	155, 216, 641, 798, 912, 1425, 1606, 1920, 2192
TasI	AATT	8 cut(s)	157, 278, 585, 710, 887, 1029, 1199, 1460
TatI	WGTACW	1 cut(s)	1036
TauI	GCSGC	4 cut(s)	32, 481, 1243, 1953
TfiI	GAWTC	8 cut(s)	391, 590, 914, 926, 1422, 1448, 1631, 2030
Tru1I	TTAA	4 cut(s)	425, 1404, 1935, 2203
Tru9I	TTAA	4 cut(s)	425, 1404, 1935, 2203
TscAI	CASTG	9 cut(s)	239, 624, 769, 1603, 1666, 1745, 1773, 2073, 2133
TseFI	GTSAC	1 cut(s)	937
TseI	GCWGC	5 cut(s)	22, 85, 758, 950, 1120
Tsp45I	GTSAC	1 cut(s)	937
TspDTI	ATGAA	7 cut(s)	162, 399, 1104, 1455, 1520, 1828, 2129
TspRI	CASTG	9 cut(s)	239, 624, 769, 1603, 1666, 1745, 1773, 2073, 2133
Van91I	CCANNNNNTGG	3 cut(s)	449, 464, 2083
Vha464I	CTTAAG	1 cut(s)	1403
VpaK11BI	GGWCC	1 cut(s)	455
XapI	RAATTY	3 cut(s)	157, 1199, 1460
XceI	RCATGY	3 cut(s)	970, 1310, 1861
XcmI	CCANNNNNNNNNTGG	1 cut(s)	656
XhoI	CTCGAG	1 cut(s)	2191
XmnI	GAANNNNTTC	2 cut(s)	390, 999
XspI	CTAG	4 cut(s)	690, 876, 900, 1166
ZrmI	AGTACT	1 cut(s)	1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.