Homeobox-leucine zipper protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G03260 AT3G03260 |
| fragaria_vesca | FvH4_1g27700 |
| malus_domestica | MD09G1277500.v1.1 MD09G1277600.v1.1 MD09G1277900.v1.1 MD17G1271000.v1.1 MD17G1271100.v1.1 |
| prunus_persica | Prupe.3G015300_v2.0.a1 |
| pyrus_communis | pycom09g18690 pycom09g18700 pycom09g18710 pycom17g26940 |
| rosa_chinensis | RchiOBHm_Chr3g0488861 |
| rosa_laevigata | RLG00000022916 |
| rosa_multiflora | Rmu_sc0001208.1_g000028 |
| rosa_roxburghii | Rroxscaffold_6G00393800 Rroxscaffold_6G00393810 |
| rosa_rugosa | Rorug03G0242100 Rorug03G0242200 |
| rosa_samantha | Rh3AG290200 Rh3BG327300 Rh3BG327400 Rh3CG324700 Rh3DG323300 |
| rosa_wichuraiana | Rw3G025720 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2060 |
| Acc36I | ACCTGC | 1 cut(s) | 2060 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 338, 353, 2104 |
| AccBSI | CCGCTC | 1 cut(s) | 367 |
| AccI | GTMKAC | 1 cut(s) | 1941 |
| AccII | CGCG | 1 cut(s) | 937 |
| AciI | CCGC | 4 cut(s) | 52, 367, 1270, 1971 |
| AclWI | GGATC | 5 cut(s) | 636, 649, 1430, 1911, 1924 |
| AcoI | YGGCCR | 1 cut(s) | 2029 |
| AcsI | RAATTY | 4 cut(s) | 46, 110, 457, 1229 |
| AcuI | CTGAAG | 4 cut(s) | 374, 1536, 1729, 2058 |
| AfaI | GTAC | 3 cut(s) | 1068, 1947, 1962 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 338, 353, 394, 760, 1970, 2005, 2065, 2104 |
| AflII | CTTAAG | 2 cut(s) | 541, 1433 |
| AflIII | ACRYGT | 1 cut(s) | 996 |
| AjnI | CCWGG | 2 cut(s) | 661, 1828 |
| AluBI | AGCT | 8 cut(s) | 7, 157, 394, 857, 1195, 1540, 1952, 2217 |
| AluI | AGCT | 8 cut(s) | 7, 157, 394, 857, 1195, 1540, 1952, 2217 |
| Alw26I | GTCTC | 1 cut(s) | 1645 |
| AlwI | GGATC | 5 cut(s) | 636, 649, 1430, 1911, 1924 |
| Ama87I | CYCGRG | 1 cut(s) | 2212 |
| AoxI | GGCC | 5 cut(s) | 172, 309, 1853, 2029, 2056 |
| ApeKI | GCWGC | 4 cut(s) | 559, 788, 980, 1150 |
| ApoI | RAATTY | 4 cut(s) | 46, 110, 457, 1229 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 279, 1029 |
| AspLEI | GCGC | 2 cut(s) | 937, 1658 |
| AspS9I | GGNCC | 2 cut(s) | 172, 344 |
| AsuC2I | CCSGG | 1 cut(s) | 134 |
| AsuHPI | GGTGA | 7 cut(s) | 651, 856, 1131, 1503, 1567, 1630, 2036 |
| AvaI | CYCGRG | 1 cut(s) | 2212 |
| AvaII | GGWCC | 1 cut(s) | 344 |
| BaeGI | GKGCMC | 1 cut(s) | 130 |
| BamHI | GGATCC | 2 cut(s) | 641, 1916 |
| BanII | GRGCYC | 1 cut(s) | 837 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 564, 596, 931, 963 |
| BbsI | GAAGAC | 1 cut(s) | 529 |
| BbvI | GCAGC | 4 cut(s) | 571, 775, 992, 1137 |
| BccI | CCATC | 4 cut(s) | 1413, 1758, 2011, 2021 |
| BceAI | ACGGC | 2 cut(s) | 2016, 2082 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1189, 1223 |
| BciT130I | CCWGG | 2 cut(s) | 663, 1830 |
| BcnI | CCSGG | 1 cut(s) | 134 |
| BcoDI | GTCTC | 1 cut(s) | 1645 |
| BfaI | CTAG | 2 cut(s) | 930, 1196 |
| BfmI | CTRYAG | 3 cut(s) | 380, 633, 1375 |
| BfrI | CTTAAG | 2 cut(s) | 541, 1433 |
| BfuAI | ACCTGC | 1 cut(s) | 2060 |
| BglII | AGATCT | 1 cut(s) | 1381 |
| BisI | GCNGC | 7 cut(s) | 368, 560, 789, 981, 1151, 1271, 1972 |
| BlpI | GCTNAGC | 1 cut(s) | 1577 |
| BlsI | GCNGC | 7 cut(s) | 369, 561, 790, 982, 1152, 1272, 1973 |
| BmcAI | AGTACT | 1 cut(s) | 1068 |
| Bme1390I | CCNGG | 3 cut(s) | 134, 663, 1830 |
| Bme18I | GGWCC | 1 cut(s) | 344 |
| BmeT110I | CYCGRG | 1 cut(s) | 2212 |
| BmgT120I | GGNCC | 2 cut(s) | 172, 344 |
| BmiI | GGNNCC | 2 cut(s) | 643, 1918 |
| BmrFI | CCNGG | 3 cut(s) | 134, 663, 1830 |
| BmrI | ACTGGG | 1 cut(s) | 2055 |
| BmsI | GCATC | 4 cut(s) | 50, 1301, 1834, 1875 |
| BmuI | ACTGGG | 1 cut(s) | 2055 |
| BpiI | GAAGAC | 1 cut(s) | 529 |
| BpmI | CTGGAG | 2 cut(s) | 416, 1920 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1577 |
| BpuMI | CCSGG | 1 cut(s) | 134 |
| Bsa29I | ATCGAT | 1 cut(s) | 480 |
| BsaBI | GATNNNNATC | 1 cut(s) | 711 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1488, 1518, 1983, 2013 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 338, 353, 394, 760, 1970, 2005, 2065, 2104 |
| Bse1I | ACTGG | 9 cut(s) | 654, 720, 792, 813, 1790, 1822, 1937, 1964, 2050 |
| Bse3DI | GCAATG | 1 cut(s) | 783 |
| Bse8I | GATNNNNATC | 1 cut(s) | 711 |
| BseBI | CCWGG | 2 cut(s) | 663, 1830 |
| BseCI | ATCGAT | 1 cut(s) | 480 |
| BseGI | GGATG | 9 cut(s) | 142, 449, 671, 1316, 1446, 1474, 1774, 1825, 1860 |
| BseJI | GATNNNNATC | 1 cut(s) | 711 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 338, 353, 394, 760, 1970, 2005, 2065, 2104 |
| BseMI | GCAATG | 1 cut(s) | 783 |
| BseMII | CTCAG | 3 cut(s) | 1559, 1568, 1619 |
| BseNI | ACTGG | 9 cut(s) | 654, 720, 792, 813, 1790, 1822, 1937, 1964, 2050 |
| BseRI | GAGGAG | 2 cut(s) | 1512, 1540 |
| BseSI | GKGCMC | 1 cut(s) | 130 |
| BseXI | GCAGC | 4 cut(s) | 571, 775, 992, 1137 |
| BseYI | CCCAGC | 1 cut(s) | 157 |
| BsgI | GTGCAG | 2 cut(s) | 578, 999 |
| Bsh1236I | CGCG | 1 cut(s) | 937 |
| BshFI | GGCC | 5 cut(s) | 174, 311, 1855, 2031, 2058 |
| BshVI | ATCGAT | 1 cut(s) | 480 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2212 |
| BsiSI | CCGG | 1 cut(s) | 134 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 338, 353, 394, 760, 1970, 2005, 2065, 2104 |
| BsmAI | GTCTC | 1 cut(s) | 1645 |
| BsmI | GAATGC | 2 cut(s) | 406, 1578 |
| BsnI | GGCC | 5 cut(s) | 174, 311, 1855, 2031, 2058 |
| BsoBI | CYCGRG | 1 cut(s) | 2212 |
| Bsp1286I | GDGCHC | 2 cut(s) | 130, 837 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1577 |
| Bsp19I | CCATGG | 1 cut(s) | 1675 |
| BspACI | CCGC | 4 cut(s) | 52, 367, 1270, 1971 |
| BspANI | GGCC | 5 cut(s) | 174, 311, 1855, 2031, 2058 |
| BspCNI | CTCAG | 3 cut(s) | 1558, 1569, 1618 |
| BspDI | ATCGAT | 1 cut(s) | 480 |
| BspFNI | CGCG | 1 cut(s) | 937 |
| BspLI | GGNNCC | 2 cut(s) | 643, 1918 |
| BspMAI | CTGCAG | 1 cut(s) | 384 |
| BspMI | ACCTGC | 1 cut(s) | 2060 |
| BspPI | GGATC | 5 cut(s) | 636, 649, 1430, 1911, 1924 |
| BspQI | GCTCTTC | 1 cut(s) | 357 |
| BspTI | CTTAAG | 2 cut(s) | 541, 1433 |
| BsrBI | CCGCTC | 1 cut(s) | 367 |
| BsrDI | GCAATG | 1 cut(s) | 783 |
| BsrI | ACTGG | 9 cut(s) | 654, 720, 792, 813, 1790, 1822, 1937, 1964, 2050 |
| BssT1I | CCWWGG | 6 cut(s) | 225, 679, 798, 987, 1317, 1675 |
| Bst2UI | CCWGG | 2 cut(s) | 663, 1830 |
| Bst4CI | ACNGT | 9 cut(s) | 125, 351, 881, 1628, 1732, 1838, 2089, 2158, 2182 |
| Bst6I | CTCTTC | 3 cut(s) | 357, 411, 1987 |
| BstAFI | CTTAAG | 2 cut(s) | 541, 1433 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 785 |
| BstC8I | GCNNGC | 2 cut(s) | 577, 627 |
| BstDEI | CTNAG | 4 cut(s) | 1003, 1545, 1577, 1605 |
| BstDSI | CCRYGG | 4 cut(s) | 880, 1154, 1675, 2064 |
| BstF5I | GGATG | 9 cut(s) | 142, 449, 671, 1316, 1446, 1474, 1774, 1825, 1860 |
| BstFNI | CGCG | 1 cut(s) | 937 |
| BstHHI | GCGC | 2 cut(s) | 937, 1658 |
| BstMAI | GTCTC | 1 cut(s) | 1645 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 785, 794, 1192, 1409 |
| BstNI | CCWGG | 2 cut(s) | 663, 1830 |
| BstNSI | RCATGY | 3 cut(s) | 1000, 1340, 1882 |
| BstSCI | CCNGG | 3 cut(s) | 132, 661, 1828 |
| BstSFI | CTRYAG | 3 cut(s) | 380, 633, 1375 |
| BstSLI | GKGCMC | 1 cut(s) | 130 |
| BstUI | CGCG | 1 cut(s) | 937 |
| BstV1I | GCAGC | 4 cut(s) | 571, 775, 992, 1137 |
| BstV2I | GAAGAC | 1 cut(s) | 529 |
| BstX2I | RGATCY | 3 cut(s) | 641, 1381, 1916 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 799 |
| BstYI | RGATCY | 3 cut(s) | 641, 1381, 1916 |
| Bsu15I | ATCGAT | 1 cut(s) | 480 |
| BsuRI | GGCC | 5 cut(s) | 174, 311, 1855, 2031, 2058 |
| BsuTUI | ATCGAT | 1 cut(s) | 480 |
| BtgI | CCRYGG | 4 cut(s) | 880, 1154, 1675, 2064 |
| BtgZI | GCGATG | 2 cut(s) | 59, 314 |
| BtsCI | GGATG | 9 cut(s) | 142, 449, 671, 1316, 1446, 1474, 1774, 1825, 1860 |
| BtsIMutI | CAGTG | 8 cut(s) | 121, 647, 799, 1633, 1696, 1797, 2094, 2154 |
| BveI | ACCTGC | 1 cut(s) | 2060 |
| Cac8I | GCNNGC | 2 cut(s) | 577, 627 |
| CfoI | GCGC | 2 cut(s) | 937, 1658 |
| Cfr13I | GGNCC | 2 cut(s) | 172, 344 |
| ClaI | ATCGAT | 1 cut(s) | 480 |
| CseI | GACGC | 1 cut(s) | 618 |
| Csp6I | GTAC | 3 cut(s) | 1067, 1946, 1961 |
| CviQI | GTAC | 3 cut(s) | 1067, 1946, 1961 |
| DdeI | CTNAG | 4 cut(s) | 1003, 1545, 1577, 1605 |
| EaeI | YGGCCR | 1 cut(s) | 2029 |
| Eam1104I | CTCTTC | 3 cut(s) | 357, 411, 1987 |
| EarI | CTCTTC | 3 cut(s) | 357, 411, 1987 |
| Eco130I | CCWWGG | 6 cut(s) | 225, 679, 798, 987, 1317, 1675 |
| Eco147I | AGGCCT | 1 cut(s) | 311 |
| Eco24I | GRGCYC | 1 cut(s) | 837 |
| Eco32I | GATATC | 1 cut(s) | 2019 |
| Eco47I | GGWCC | 1 cut(s) | 344 |
| Eco57I | CTGAAG | 4 cut(s) | 374, 1536, 1729, 2058 |
| Eco88I | CYCGRG | 1 cut(s) | 2212 |
| EcoRI | GAATTC | 1 cut(s) | 46 |
| EcoRII | CCWGG | 2 cut(s) | 661, 1828 |
| EcoRV | GATATC | 1 cut(s) | 2019 |
| EcoT14I | CCWWGG | 6 cut(s) | 225, 679, 798, 987, 1317, 1675 |
| EcoT38I | GRGCYC | 1 cut(s) | 837 |
| ErhI | CCWWGG | 6 cut(s) | 225, 679, 798, 987, 1317, 1675 |
| FauI | CCCGC | 1 cut(s) | 59 |
| FauNDI | CATATG | 1 cut(s) | 1405 |
| FblI | GTMKAC | 1 cut(s) | 1941 |
| Fnu4HI | GCNGC | 7 cut(s) | 368, 560, 789, 981, 1151, 1271, 1972 |
| FokI | GGATG | 9 cut(s) | 149, 436, 678, 1323, 1453, 1481, 1781, 1812, 1847 |
| FriOI | GRGCYC | 1 cut(s) | 837 |
| Fsp4HI | GCNGC | 7 cut(s) | 368, 560, 789, 981, 1151, 1271, 1972 |
| FspBI | CTAG | 2 cut(s) | 930, 1196 |
| GlaI | GCGC | 2 cut(s) | 936, 1657 |
| GluI | GCNGC | 7 cut(s) | 368, 560, 789, 981, 1151, 1271, 1972 |
| GsaI | CCCAGC | 1 cut(s) | 161 |
| GsuI | CTGGAG | 2 cut(s) | 416, 1920 |
| HaeIII | GGCC | 5 cut(s) | 174, 311, 1855, 2031, 2058 |
| HapII | CCGG | 1 cut(s) | 134 |
| HgaI | GACGC | 1 cut(s) | 618 |
| HhaI | GCGC | 2 cut(s) | 937, 1658 |
| Hin6I | GCGC | 2 cut(s) | 935, 1656 |
| HinP1I | GCGC | 2 cut(s) | 935, 1656 |
| HincII | GTYRAC | 5 cut(s) | 152, 994, 1942, 2121, 2161 |
| HindII | GTYRAC | 5 cut(s) | 152, 994, 1942, 2121, 2161 |
| HpaII | CCGG | 1 cut(s) | 134 |
| HphI | GGTGA | 7 cut(s) | 651, 856, 1131, 1503, 1567, 1630, 2036 |
| Hpy166II | GTNNAC | 9 cut(s) | 152, 347, 698, 994, 1621, 1942, 2078, 2121, 2161 |
| Hpy188I | TCNGA | 7 cut(s) | 207, 825, 1095, 1548, 1615, 1726, 1748 |
| Hpy188III | TCNNGA | 5 cut(s) | 960, 1260, 1665, 1892, 2098 |
| Hpy8I | GTNNAC | 9 cut(s) | 152, 347, 698, 994, 1621, 1942, 2078, 2121, 2161 |
| Hpy99I | CGWCG | 2 cut(s) | 833, 1946 |
| HpyAV | CCTTC | 4 cut(s) | 398, 590, 1287, 1511 |
| HpyCH4III | ACNGT | 9 cut(s) | 125, 351, 881, 1628, 1732, 1838, 2089, 2158, 2182 |
| HpyCH4IV | ACGT | 3 cut(s) | 148, 1944, 1959 |
| HpyCH4V | TGCA | 8 cut(s) | 382, 559, 728, 980, 1129, 1403, 1795, 1805 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 785, 794, 1192, 1409 |
| HpyF3I | CTNAG | 4 cut(s) | 1003, 1545, 1577, 1605 |
| HpySE526I | ACGT | 3 cut(s) | 148, 1944, 1959 |
| HspAI | GCGC | 2 cut(s) | 935, 1656 |
| LguI | GCTCTTC | 1 cut(s) | 357 |
| LmnI | GCTCC | 4 cut(s) | 4, 1319, 1409, 1939 |
| Lsp1109I | GCAGC | 4 cut(s) | 571, 775, 992, 1137 |
| LweI | GCATC | 4 cut(s) | 50, 1301, 1834, 1875 |
| MaeI | CTAG | 2 cut(s) | 930, 1196 |
| MaeII | ACGT | 3 cut(s) | 148, 1944, 1959 |
| MaeIII | GTNAC | 6 cut(s) | 967, 1042, 1321, 1504, 1898, 2041 |
| MbiI | CCGCTC | 1 cut(s) | 367 |
| MfeI | CAATTG | 1 cut(s) | 1059 |
| MflI | RGATCY | 3 cut(s) | 641, 1381, 1916 |
| MhlI | GDGCHC | 2 cut(s) | 130, 837 |
| MlyI | GAGTC | 5 cut(s) | 96, 1001, 1647, 1973, 2153 |
| MmeI | TCCRAC | 2 cut(s) | 619, 2010 |
| MroXI | GAANNNNTTC | 2 cut(s) | 279, 1029 |
| MslI | CAYNNNNRTG | 5 cut(s) | 84, 135, 528, 664, 1883 |
| MspA1I | CMGCKG | 2 cut(s) | 157, 394 |
| MspCI | CTTAAG | 2 cut(s) | 541, 1433 |
| MspI | CCGG | 1 cut(s) | 134 |
| MspR9I | CCNGG | 3 cut(s) | 134, 663, 1830 |
| MunI | CAATTG | 1 cut(s) | 1059 |
| Mva1269I | GAATGC | 2 cut(s) | 406, 1578 |
| MvaI | CCWGG | 2 cut(s) | 663, 1830 |
| MvnI | CGCG | 1 cut(s) | 937 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 785, 794, 1192, 1409 |
| NciI | CCSGG | 1 cut(s) | 134 |
| NcoI | CCATGG | 1 cut(s) | 1675 |
| NdeI | CATATG | 1 cut(s) | 1405 |
| NlaIV | GGNNCC | 2 cut(s) | 643, 1918 |
| NmuCI | GTSAC | 1 cut(s) | 967 |
| NspI | RCATGY | 3 cut(s) | 1000, 1340, 1882 |
| PaeR7I | CTCGAG | 1 cut(s) | 2212 |
| PaqCI | CACCTGC | 1 cut(s) | 2060 |
| PceI | AGGCCT | 1 cut(s) | 311 |
| PciI | ACATGT | 1 cut(s) | 996 |
| PciSI | GCTCTTC | 1 cut(s) | 357 |
| PctI | GAATGC | 2 cut(s) | 406, 1578 |
| PdmI | GAANNNNTTC | 2 cut(s) | 279, 1029 |
| PfeI | GAWTC | 9 cut(s) | 280, 520, 620, 944, 956, 1452, 1478, 1661, 2051 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 338, 353, 2104 |
| PfoI | TCCNGGA | 1 cut(s) | 1828 |
| PkrI | GCNGC | 7 cut(s) | 369, 561, 790, 982, 1152, 1272, 1973 |
| PleI | GAGTC | 5 cut(s) | 96, 1001, 1646, 1973, 2152 |
| PpsI | GAGTC | 5 cut(s) | 96, 1001, 1646, 1973, 2152 |
| PscI | ACATGT | 1 cut(s) | 996 |
| Psp6I | CCWGG | 2 cut(s) | 661, 1828 |
| PspFI | CCCAGC | 1 cut(s) | 157 |
| PspGI | CCWGG | 2 cut(s) | 661, 1828 |
| PspN4I | GGNNCC | 2 cut(s) | 643, 1918 |
| PspPI | GGNCC | 2 cut(s) | 172, 344 |
| PspXI | VCTCGAGB | 1 cut(s) | 2212 |
| PstI | CTGCAG | 1 cut(s) | 384 |
| PsuI | RGATCY | 3 cut(s) | 641, 1381, 1916 |
| PvuII | CAGCTG | 2 cut(s) | 157, 394 |
| RsaI | GTAC | 3 cut(s) | 1068, 1947, 1962 |
| RsaNI | GTAC | 3 cut(s) | 1067, 1946, 1961 |
| RseI | CAYNNNNRTG | 5 cut(s) | 84, 135, 528, 664, 1883 |
| SalI | GTCGAC | 1 cut(s) | 1940 |
| SapI | GCTCTTC | 1 cut(s) | 357 |
| SatI | GCNGC | 7 cut(s) | 368, 560, 789, 981, 1151, 1271, 1972 |
| Sau96I | GGNCC | 2 cut(s) | 172, 344 |
| ScaI | AGTACT | 1 cut(s) | 1068 |
| SchI | GAGTC | 5 cut(s) | 96, 1001, 1647, 1973, 2153 |
| ScrFI | CCNGG | 3 cut(s) | 134, 663, 1830 |
| SduI | GDGCHC | 2 cut(s) | 130, 837 |
| SfaNI | GCATC | 4 cut(s) | 50, 1301, 1834, 1875 |
| SfcI | CTRYAG | 3 cut(s) | 380, 633, 1375 |
| Sfr274I | CTCGAG | 1 cut(s) | 2212 |
| SinI | GGWCC | 1 cut(s) | 344 |
| SlaI | CTCGAG | 1 cut(s) | 2212 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 84, 135, 528, 664, 1883 |
| SmlI | CTYRAG | 3 cut(s) | 541, 1433, 2212 |
| SmoI | CTYRAG | 3 cut(s) | 541, 1433, 2212 |
| SseBI | AGGCCT | 1 cut(s) | 311 |
| SsiI | CCGC | 4 cut(s) | 52, 367, 1270, 1971 |
| SspMI | CTAG | 2 cut(s) | 930, 1196 |
| StuI | AGGCCT | 1 cut(s) | 311 |
| StyD4I | CCNGG | 3 cut(s) | 132, 661, 1828 |
| StyI | CCWWGG | 6 cut(s) | 225, 679, 798, 987, 1317, 1675 |
| TaaI | ACNGT | 9 cut(s) | 125, 351, 881, 1628, 1732, 1838, 2089, 2158, 2182 |
| TaiI | ACGT | 3 cut(s) | 151, 1947, 1962 |
| TatI | WGTACW | 1 cut(s) | 1066 |
| TauI | GCSGC | 3 cut(s) | 370, 1273, 1974 |
| TfiI | GAWTC | 9 cut(s) | 280, 520, 620, 944, 956, 1452, 1478, 1661, 2051 |
| TscAI | CASTG | 8 cut(s) | 128, 654, 799, 1633, 1696, 1797, 2094, 2154 |
| TseFI | GTSAC | 1 cut(s) | 967 |
| TseI | GCWGC | 4 cut(s) | 559, 788, 980, 1150 |
| Tsp45I | GTSAC | 1 cut(s) | 967 |
| TspDTI | ATGAA | 8 cut(s) | 51, 288, 491, 1134, 1485, 1550, 1849, 2150 |
| TspGWI | ACGGA | 1 cut(s) | 442 |
| TspRI | CASTG | 8 cut(s) | 128, 654, 799, 1633, 1696, 1797, 2094, 2154 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 338, 353, 2104 |
| Vha464I | CTTAAG | 2 cut(s) | 541, 1433 |
| VpaK11BI | GGWCC | 1 cut(s) | 344 |
| XapI | RAATTY | 4 cut(s) | 46, 110, 457, 1229 |
| XceI | RCATGY | 3 cut(s) | 1000, 1340, 1882 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 686 |
| XhoI | CTCGAG | 1 cut(s) | 2212 |
| XmiI | GTMKAC | 1 cut(s) | 1941 |
| XmnI | GAANNNNTTC | 2 cut(s) | 279, 1029 |
| XspI | CTAG | 2 cut(s) | 930, 1196 |
| ZrmI | AGTACT | 1 cut(s) | 1068 |