Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006882

Physical Location & Seq

Genomic Coordinates Forward (+)

19468821 .. 19470057

Gene Structure 1237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g18700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGAGCTGCCCAGAAATCATCCAACTTCTGGTGATGGACATGAAGCATCGAGTTCCCGCAGGGAGAACAAGAAGTTTCAACGCCATACTTTTGAGCAGATACAACGACTCGAAGAATTTTTCAGGAATTGCACCCACCCCGATGACGACCAACGTGAACAACTCTGTAGGGAGTTGGGGCTTGACGCAAATCAAATCACGTTTTGGTTTCAAAACAAAAGAACACAGAACAAGATACAAGATGAAAGAGCAGAAAACATTGCTCTTCATCAACTGAATGAAAGTATTCGTCGTGAAAACTGTTTAATGAGAGAAACCTTAAAGAATGTCGTTTGCCCAACTTGTGGTGGTGCATCGATTCCAGAAGAAGAGCGACAACTCAATCTACAAAGACTTCGACAGGAGAATGCCTATTTGAAACAAGAGCATGACAAAGTAGCCAACCTTCTTTCCAAGTATAAAGGGAAACCACTATCACTTATTAAATCGTTGGCGCCAGTAGTTGGATCGATCGCAAAATTTATCACCAGGATGTTCCTTGAACCACGTGATCGCCAGAAGTCCACCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

191

Amino Acids

22.29

Weight (kDa)

9.02

Isoelectric Point (pI)

48.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 78	2.5e-15	Homeodomain
Homeobox_KN	PF05920	45 - 75	8.2e-06	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03260 AT3G03260
fragaria_vesca	FvH4_1g27700
malus_domestica	MD09G1277500.v1.1 MD09G1277600.v1.1 MD09G1277900.v1.1 MD17G1271000.v1.1 MD17G1271100.v1.1
prunus_persica	Prupe.3G015300_v2.0.a1
pyrus_communis	pycom09g18690 pycom09g18700 pycom09g18710 pycom17g26940
rosa_chinensis	RchiOBHm_Chr3g0488861
rosa_laevigata	RLG00000022916
rosa_multiflora	Rmu_sc0001208.1_g000028
rosa_roxburghii	Rroxscaffold_6G00393800 Rroxscaffold_6G00393810
rosa_rugosa	Rorug03G0242100 Rorug03G0242200
rosa_samantha	Rh3AG290200 Rh3BG327300 Rh3BG327400 Rh3CG324700 Rh3DG323300
rosa_wichuraiana	Rw3G025720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	493
AccB7I	CCANNNNNTGG	3 cut(s)	29, 344, 503
AciI	CCGC	1 cut(s)	58
AclWI	GGATC	1 cut(s)	514
AcsI	RAATTY	2 cut(s)	116, 518
AcvI	CACGTG	1 cut(s)	548
AcyI	GRCGYC	1 cut(s)	494
AfiI	CCNNNNNNNGG	3 cut(s)	29, 344, 503
AgsI	TTSAA	4 cut(s)	80, 212, 418, 542
AjnI	CCWGG	1 cut(s)	527
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
AlwI	GGATC	1 cut(s)	514
ApeKI	GCWGC	1 cut(s)	7
ApoI	RAATTY	2 cut(s)	116, 518
Asp700I	GAANNNNTTC	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	496
AsuHPI	GGTGA	2 cut(s)	44, 517
BanI	GGYRCC	1 cut(s)	493
BarI	GAAGNNNNNNTAC	2 cut(s)	429, 461
BbrPI	CACGTG	1 cut(s)	548
BccI	CCATC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	529
BfmI	CTRYAG	1 cut(s)	166
BfoI	RGCGCY	1 cut(s)	497
BisI	GCNGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	529
BmiI	GGNNCC	1 cut(s)	495
BmrFI	CCNGG	1 cut(s)	529
BmsI	GCATC	2 cut(s)	56, 362
Bsa29I	ATCGAT	2 cut(s)	356, 509
BsaAI	YACGTR	1 cut(s)	548
BsaHI	GRCGYC	1 cut(s)	494
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 344, 503
Bse1I	ACTGG	1 cut(s)	497
Bse3DI	GCAATG	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	529
BseCI	ATCGAT	2 cut(s)	356, 509
BseGI	GGATG	2 cut(s)	19, 537
BseLI	CCNNNNNNNGG	3 cut(s)	29, 344, 503
BseMI	GCAATG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	497
Bsh1285I	CGRYCG	1 cut(s)	513
BshNI	GGYRCC	1 cut(s)	493
BshVI	ATCGAT	2 cut(s)	356, 509
BsiEI	CGRYCG	1 cut(s)	513
BslI	CCNNNNNNNGG	3 cut(s)	29, 344, 503
BsmI	GAATGC	1 cut(s)	412
Bsp143I	GATC	3 cut(s)	506, 510, 550
BspACI	CCGC	1 cut(s)	58
BspDI	ATCGAT	2 cut(s)	356, 509
BspLI	GGNNCC	1 cut(s)	495
BspPI	GGATC	1 cut(s)	514
BspQI	GCTCTTC	2 cut(s)	270, 363
BspT107I	GGYRCC	1 cut(s)	493
BsrDI	GCAATG	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	497
BssMI	GATC	3 cut(s)	506, 510, 550
BssNI	GRCGYC	1 cut(s)	494
Bst2UI	CCWGG	1 cut(s)	529
Bst4CI	ACNGT	1 cut(s)	302
Bst6I	CTCTTC	2 cut(s)	270, 363
BstACI	GRCGYC	1 cut(s)	494
BstBAI	YACGTR	1 cut(s)	548
BstDEI	CTNAG	1 cut(s)	570
BstF5I	GGATG	2 cut(s)	19, 537
BstH2I	RGCGCY	1 cut(s)	497
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	3 cut(s)	509, 513, 553
BstMBI	GATC	3 cut(s)	506, 510, 550
BstMCI	CGRYCG	1 cut(s)	513
BstNI	CCWGG	1 cut(s)	529
BstSCI	CCNGG	1 cut(s)	527
BstSFI	CTRYAG	1 cut(s)	166
Bsu15I	ATCGAT	2 cut(s)	356, 509
BsuTUI	ATCGAT	2 cut(s)	356, 509
BtsCI	GGATG	2 cut(s)	19, 537
CfoI	GCGC	1 cut(s)	496
ClaI	ATCGAT	2 cut(s)	356, 509
CseI	GACGC	1 cut(s)	194
CviAII	CATG	2 cut(s)	41, 428
CviJI	RGCY	3 cut(s)	7, 181, 440
CviKI_1	RGCY	3 cut(s)	7, 181, 440
DdeI	CTNAG	1 cut(s)	570
DinI	GGCGCC	1 cut(s)	495
DpnI	GATC	3 cut(s)	508, 512, 552
DpnII	GATC	3 cut(s)	506, 510, 550
Eam1104I	CTCTTC	2 cut(s)	270, 363
EarI	CTCTTC	2 cut(s)	270, 363
Eco72I	CACGTG	1 cut(s)	548
EcoRII	CCWGG	1 cut(s)	527
EgeI	GGCGCC	1 cut(s)	495
EheI	GGCGCC	1 cut(s)	495
FaeI	CATG	2 cut(s)	44, 431
FaiI	YATR	4 cut(s)	42, 87, 429, 459
FatI	CATG	2 cut(s)	40, 427
FauI	CCCGC	1 cut(s)	65
Fnu4HI	GCNGC	1 cut(s)	8
FokI	GGATG	2 cut(s)	6, 544
Fsp4HI	GCNGC	1 cut(s)	8
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	1 cut(s)	8
HaeII	RGCGCY	1 cut(s)	497
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	1 cut(s)	496
Hin1I	GRCGYC	1 cut(s)	494
Hin1II	CATG	2 cut(s)	44, 431
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HinfI	GANTC	2 cut(s)	108, 358
HphI	GGTGA	2 cut(s)	44, 517
Hpy166II	GTNNAC	2 cut(s)	158, 564
Hpy188III	TCNNGA	3 cut(s)	124, 293, 362
Hpy8I	GTNNAC	2 cut(s)	158, 564
Hpy99I	CGWCG	1 cut(s)	294
HpyAV	CCTTC	1 cut(s)	455
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	3 cut(s)	154, 200, 547
HpyCH4V	TGCA	2 cut(s)	132, 353
HpyF3I	CTNAG	1 cut(s)	570
HpySE526I	ACGT	3 cut(s)	154, 200, 547
Hsp92I	GRCGYC	1 cut(s)	494
Hsp92II	CATG	2 cut(s)	44, 431
HspAI	GCGC	1 cut(s)	494
KasI	GGCGCC	1 cut(s)	493
Kzo9I	GATC	3 cut(s)	506, 510, 550
LguI	GCTCTTC	2 cut(s)	270, 363
LmnI	GCTCC	1 cut(s)	4
LweI	GCATC	2 cut(s)	56, 362
MaeII	ACGT	3 cut(s)	154, 200, 547
MalI	GATC	3 cut(s)	508, 512, 552
MboI	GATC	3 cut(s)	506, 510, 550
MboII	GAAGA	4 cut(s)	125, 257, 377, 380
MluCI	AATT	3 cut(s)	116, 127, 518
Mly113I	GGCGCC	1 cut(s)	494
MlyI	GAGTC	1 cut(s)	102
MmeI	TCCRAC	2 cut(s)	47, 484
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	3 cut(s)	305, 320, 483
MslI	CAYNNNNRTG	2 cut(s)	141, 530
MspR9I	CCNGG	1 cut(s)	529
Mva1269I	GAATGC	1 cut(s)	412
MvaI	CCWGG	1 cut(s)	529
NarI	GGCGCC	1 cut(s)	494
NdeII	GATC	3 cut(s)	506, 510, 550
NlaIII	CATG	2 cut(s)	44, 431
NlaIV	GGNNCC	1 cut(s)	495
PciSI	GCTCTTC	2 cut(s)	270, 363
PctI	GAATGC	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	358
PflMI	CCANNNNNTGG	3 cut(s)	29, 344, 503
PkrI	GCNGC	1 cut(s)	9
Ple19I	CGATCG	1 cut(s)	513
PleI	GAGTC	1 cut(s)	102
PluTI	GGCGCC	1 cut(s)	497
PmaCI	CACGTG	1 cut(s)	548
PmlI	CACGTG	1 cut(s)	548
PpsI	GAGTC	1 cut(s)	102
Ppu21I	YACGTR	1 cut(s)	548
Psp6I	CCWGG	1 cut(s)	527
PspCI	CACGTG	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	527
PspN4I	GGNNCC	1 cut(s)	495
PvuI	CGATCG	1 cut(s)	513
RseI	CAYNNNNRTG	2 cut(s)	141, 530
SapI	GCTCTTC	2 cut(s)	270, 363
SaqAI	TTAA	3 cut(s)	305, 320, 483
SatI	GCNGC	1 cut(s)	8
Sau3AI	GATC	3 cut(s)	506, 510, 550
SchI	GAGTC	1 cut(s)	102
ScrFI	CCNGG	1 cut(s)	529
SetI	ASST	7 cut(s)	9, 157, 203, 320, 447, 550, 569
SfaNI	GCATC	2 cut(s)	56, 362
SfcI	CTRYAG	1 cut(s)	166
SfoI	GGCGCC	1 cut(s)	495
SmiMI	CAYNNNNRTG	2 cut(s)	141, 530
Sse9I	AATT	3 cut(s)	116, 127, 518
SsiI	CCGC	1 cut(s)	58
SspDI	GGCGCC	1 cut(s)	493
StyD4I	CCNGG	1 cut(s)	527
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	3 cut(s)	157, 203, 550
TaqI	TCGA	5 cut(s)	50, 111, 356, 397, 509
TasI	AATT	3 cut(s)	116, 127, 518
TfiI	GAWTC	1 cut(s)	358
Tru1I	TTAA	3 cut(s)	305, 320, 483
Tru9I	TTAA	3 cut(s)	305, 320, 483
TseI	GCWGC	1 cut(s)	7
TspDTI	ATGAA	4 cut(s)	57, 257, 258, 294
Van91I	CCANNNNNTGG	3 cut(s)	29, 344, 503
XapI	RAATTY	2 cut(s)	116, 518
XmnI	GAANNNNTTC	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.