Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0006882

Physical Location & Seq

Genomic Coordinates Reverse (-)

34592670 .. 34597009

Gene Structure 4340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G025720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2130 bp

ATGGGAAATGGAAATGAAAATGGTGGAGCCTTGGGTGATGAACAAGAAGCATCGAATTCTCGCAAGAGAGGGAAGACTTATCACCGCCACACCTCTCAGCAGATACAACATCTCGAAGCATTTTTCAAGAAATGCCCCCACCCGGACGATAACCAACGTCGTCAGTTGAGCAAGGAGCTAGGGTTAGAGCCACAACAGATCAAGTTTTGGTTCCAAAACAAGAGGACTCAAACAAAGACTCAAACTGAGAGAGCAGACAACTCCACTCTTCGAGCGGAAAATAGTAGGATCCAGTGTGAGAACTATGCAATTAAAGAGGCTTTGAAGAATGTCATTTGTCCTGCTTGTGGAGGTCCTCCTTTTGGAGAGCAAGAACGGCAAAAGAGTTTGCAGAAACTTCACTTGGAGAATGCCCAATTGAAAGAAGAGCATGACAAAGTAGCCACCCTTCTTTCCAAGTTTATTGGGAAACCGCTATCTCAAATAGATTCGTTGACATATGCCGCTAGATCCTCGCCGGATGTATCACCAGGATTGTTAATAAACCAAGCAATGAGAAGTTCTGACCTTAGTCATGAATTTATTAATCCTACAATTAGTAACAATGCTGCGCTAGCTTATTACCAGGTAAATGCAATCCCTGAGACTGAAAAGGCAGTCATGATAGAGACAGCGGCAAGTGCCATGGAAGAGTTGATTAGAATTTTGCGGATCAATGAGCCTATGTGGATCAAGTCCAACAGTGACGGGAGATATGTCCTTAACCATGAAAACTACGATAAGATATTTCCAAGGGCTTATCGCTTAAAAACCTCCGGTGCTCGTATAGAGTCCTCAAAAGATTCAGGAATTGCGAGCATTAGTGCACTACAATTGGTTGACACATTTTTAGATGCAAATAAGTGGGTAGACCTCTTTCCAACAATTGTGACAAAAGCTAAAACAATTGAAGTACTCCAAGCAGGAATGTTTGGGACCCAGAGTGGTTGCTTACTGCTGATGTATGGGCAAATGCACATTCTTTCACCACTGGTGCTTCCACGAGATTTCTACTTTCTCCGCTTTTGTCAGCAAATCGAAGTTGGCACATGGGTGATTGTTGATGTCTCTTATGATTGCTTTAAAGGAAGTACTACTCAACGATCATGGAGGCTTCCTTCAGGATGCATGATTCAAGACATGCCAAATGGATGCTCTAAGGTAACTTGGGTTGAACACGTGGAAGTCGATGATAAGACACAAACTCATCGGCTCTATAGAGATCTTGTGTGTGGTAGCGTCGCATATGGAGCACAAAGATGGATCGTTACTCTCCAGAGGATGTGTGAAAGATTTGGTTGCTCATTCGATGACGTTTCATCTAGTAGCGAATTTGGAGCAATGTTTGCTATGCCCGAAGGCAGAAGTAGCATAATGAAGCTTTCCCACAGGATGGTTAAGAACTTTTGTGGAATGTTGAGCATGTCAGGAAAGCTTGATTTCCCTCAACTATCAGAAGTGAATAATAGCGGGGTTCGAGTCAATGTTCGTAAAAGCATAGAACCAGGCGAGCCCAGTGGCATGGTCGTCGTTGCTGCTACTTCTCTATGGCTTCCTCTATATTCCCAAGACGTCTTTAACTTCTTCACAAATGAAAAAACAAGAGTGCAGTGGGATGTCCTCTCTAACGGAAATCCAATGAATGTGATTGCACACATTCCAACTGGAGCTCGTCCAGGAAACTGTATTTCTATCATTCAGCCTTTTGTACCGACAGAGGGTAATATGCTTCTTTTGCAAGAAAGTTATATAGACACTCTGGGGTCTATGGTTATCTATGCTCCTGTCGAGGTAGCTACTATCAATATAGCAGTCGGGGGTGAGGTTGACTCTTCTGACATTCCCATACTTCCCTCGGGGTTCATAATCTCAGATGATGGTCGTCCTGATACTAGGACATCGAGCAGCACAAACCCTGCCAAATCAGGTCATTCAGGTGGTTCACTCCTTACTGTGGCTTTCCAGATATTGGTTCCCTTCCCCTCACCTTCCCAAGTGCTGAACGTTGAGTCCGTGGCAAGTGTCAATACTCTTATTAGTTTGACTGTTCAAAAAATAAAAACTGCTCTCAACTGCGCTGGCTTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

709

Amino Acids

78.61

Weight (kDa)

6.56

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	25 - 79	5.5e-18	Homeodomain
Homeobox_KN	PF05920	44 - 76	5.3e-06	Homeobox KN domain
START	PF01852	225 - 444	2.4e-29	START domain
PDF2_C	PF25797	465 - 705	9.5e-101	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03260 AT3G03260
fragaria_vesca	FvH4_1g27700
malus_domestica	MD09G1277500.v1.1 MD09G1277600.v1.1 MD09G1277900.v1.1 MD17G1271000.v1.1 MD17G1271100.v1.1
prunus_persica	Prupe.3G015300_v2.0.a1
pyrus_communis	pycom09g18690 pycom09g18700 pycom09g18710 pycom17g26940
rosa_chinensis	RchiOBHm_Chr3g0488861
rosa_laevigata	RLG00000022916
rosa_multiflora	Rmu_sc0001208.1_g000028
rosa_roxburghii	Rroxscaffold_6G00393800 Rroxscaffold_6G00393810
rosa_rugosa	Rorug03G0242100 Rorug03G0242200
rosa_samantha	Rh3AG290200 Rh3BG327300 Rh3BG327400 Rh3CG324700 Rh3DG323300
rosa_wichuraiana	Rw3G025720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1614
AccB7I	CCANNNNNTGG	2 cut(s)	1432, 2008
AccBSI	CCGCTC	1 cut(s)	275
AccI	GTMKAC	1 cut(s)	909
AciI	CCGC	8 cut(s)	85, 275, 473, 504, 674, 709, 1060, 1509
AclI	AACGTT	1 cut(s)	2043
AclWI	GGATC	6 cut(s)	283, 296, 504, 719, 737, 1310
AcsI	RAATTY	4 cut(s)	55, 578, 702, 1370
AcuI	CTGAAG	1 cut(s)	1143
AcvI	CACGTG	1 cut(s)	1219
AcyI	GRCGYC	1 cut(s)	1611
AfaI	GTAC	3 cut(s)	954, 1132, 1749
AfiI	CCNNNNNNNGG	7 cut(s)	142, 347, 362, 1432, 1757, 1993, 2008
AflIII	ACRYGT	1 cut(s)	1216
AgsI	TTSAA	7 cut(s)	127, 325, 421, 950, 1175, 1214, 2090
AjnI	CCWGG	4 cut(s)	529, 624, 1543, 1714
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
AleI	CACNNNNGTG	1 cut(s)	1091
AloI	GAACNNNNNNTCC	2 cut(s)	2033, 2065
AluBI	AGCT	7 cut(s)	178, 617, 938, 1420, 1474, 1709, 1835
AluI	AGCT	7 cut(s)	178, 617, 938, 1420, 1474, 1709, 1835
Alw21I	GWGCWC	4 cut(s)	823, 868, 1294, 1711
Alw26I	GTCTC	3 cut(s)	638, 662, 1111
Alw44I	GTGCAC	1 cut(s)	864
AlwI	GGATC	6 cut(s)	283, 296, 504, 719, 737, 1310
Ama87I	CYCGRG	1 cut(s)	1894
ApaLI	GTGCAC	1 cut(s)	864
ApeKI	GCWGC	3 cut(s)	608, 1574, 1944
ApoI	RAATTY	4 cut(s)	55, 578, 702, 1370
AseI	ATTAAT	1 cut(s)	585
AspLEI	GCGC	2 cut(s)	613, 2117
AspS9I	GGNCC	2 cut(s)	353, 975
AsuC2I	CCSGG	1 cut(s)	143
AsuHPI	GGTGA	7 cut(s)	47, 74, 519, 1017, 1105, 1871, 2016
AsuNHI	GCTAGC	1 cut(s)	613
AvaI	CYCGRG	1 cut(s)	1894
AvaII	GGWCC	2 cut(s)	353, 975
BaeGI	GKGCMC	1 cut(s)	868
BamHI	GGATCC	1 cut(s)	288
BanII	GRGCYC	2 cut(s)	1554, 1711
BarI	GAAGNNNNNNTAC	2 cut(s)	432, 464
BauI	CACGAG	1 cut(s)	1041
BbrPI	CACGTG	1 cut(s)	1219
BbsI	GAAGAC	1 cut(s)	80
Bbv12I	GWGCWC	4 cut(s)	823, 868, 1294, 1711
BbvI	GCAGC	3 cut(s)	595, 1561, 1956
BccI	CCATC	3 cut(s)	1293, 1426, 1910
BceAI	ACGGC	1 cut(s)	392
BcgI	CGANNNNNNTGC	2 cut(s)	1549, 1583
BciT130I	CCWGG	4 cut(s)	531, 626, 1545, 1716
BcnI	CCSGG	1 cut(s)	143
BcoDI	GTCTC	3 cut(s)	638, 662, 1111
BfaI	CTAG	5 cut(s)	179, 507, 614, 1362, 1932
BfmI	CTRYAG	1 cut(s)	1255
BglII	AGATCT	1 cut(s)	1261
BisI	GCNGC	5 cut(s)	504, 609, 675, 1575, 1945
BlsI	GCNGC	5 cut(s)	505, 610, 676, 1576, 1946
BmcAI	AGTACT	2 cut(s)	954, 1132
Bme1390I	CCNGG	5 cut(s)	143, 531, 626, 1545, 1716
Bme18I	GGWCC	2 cut(s)	353, 975
BmeT110I	CYCGRG	1 cut(s)	1894
BmgT120I	GGNCC	2 cut(s)	353, 975
BmiI	GGNNCC	6 cut(s)	28, 212, 290, 976, 977, 2013
BmrFI	CCNGG	5 cut(s)	143, 531, 626, 1545, 1716
BmrI	ACTGGG	1 cut(s)	1548
BmsI	GCATC	4 cut(s)	59, 883, 1154, 1181
BmtI	GCTAGC	1 cut(s)	617
BmuI	ACTGGG	1 cut(s)	1548
BoxI	GACNNNNGTC	1 cut(s)	570
BpiI	GAAGAC	1 cut(s)	80
BplI	GAGNNNNNCTC	2 cut(s)	1853, 1885
BpmI	CTGGAG	2 cut(s)	1298, 1725
BpuMI	CCSGG	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	1219
BsaHI	GRCGYC	1 cut(s)	1611
BsaJI	CCNNGG	5 cut(s)	30, 684, 791, 1893, 2052
BsaWI	WCCGGW	1 cut(s)	815
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	7 cut(s)	142, 347, 362, 1432, 1757, 1993, 2008
Bse1I	ACTGG	4 cut(s)	292, 1035, 1554, 1708
Bse3DI	GCAATG	2 cut(s)	558, 1386
BseBI	CCWGG	4 cut(s)	531, 626, 1545, 1716
BseDI	CCNNGG	5 cut(s)	30, 684, 791, 1893, 2052
BseGI	GGATG	6 cut(s)	526, 1169, 1196, 1326, 1437, 1660
BseLI	CCNNNNNNNGG	7 cut(s)	142, 347, 362, 1432, 1757, 1993, 2008
BseMI	GCAATG	2 cut(s)	558, 1386
BseMII	CTCAG	4 cut(s)	110, 237, 633, 1923
BseNI	ACTGG	4 cut(s)	292, 1035, 1554, 1708
BseSI	GKGCMC	1 cut(s)	868
BseXI	GCAGC	3 cut(s)	595, 1561, 1956
BsgI	GTGCAG	1 cut(s)	1667
BsiHKAI	GWGCWC	4 cut(s)	823, 868, 1294, 1711
BsiHKCI	CYCGRG	1 cut(s)	1894
BsiSI	CCGG	3 cut(s)	143, 518, 816
BslFI	GGGAC	1 cut(s)	988
BslI	CCNNNNNNNGG	7 cut(s)	142, 347, 362, 1432, 1757, 1993, 2008
BsmAI	GTCTC	3 cut(s)	638, 662, 1111
BsmFI	GGGAC	1 cut(s)	988
BsmI	GAATGC	1 cut(s)	415
BsoBI	CYCGRG	1 cut(s)	1894
Bsp1286I	GDGCHC	5 cut(s)	823, 868, 1294, 1554, 1711
Bsp143I	GATC	8 cut(s)	198, 288, 509, 711, 729, 1142, 1261, 1302
Bsp19I	CCATGG	1 cut(s)	684
BspACI	CCGC	8 cut(s)	85, 275, 473, 504, 674, 709, 1060, 1509
BspCNI	CTCAG	4 cut(s)	109, 238, 634, 1922
BspHI	TCATGA	2 cut(s)	574, 660
BspLI	GGNNCC	6 cut(s)	28, 212, 290, 976, 977, 2013
BspOI	GCTAGC	1 cut(s)	617
BspPI	GGATC	6 cut(s)	283, 296, 504, 719, 737, 1310
BspQI	GCTCTTC	1 cut(s)	420
BsrBI	CCGCTC	1 cut(s)	275
BsrDI	GCAATG	2 cut(s)	558, 1386
BsrI	ACTGG	4 cut(s)	292, 1035, 1554, 1708
BssECI	CCNNGG	5 cut(s)	30, 684, 791, 1893, 2052
BssMI	GATC	8 cut(s)	198, 288, 509, 711, 729, 1142, 1261, 1302
BssNI	GRCGYC	1 cut(s)	1611
BssSI	CACGAG	1 cut(s)	1041
BssT1I	CCWWGG	3 cut(s)	30, 684, 791
Bst2BI	CACGAG	1 cut(s)	1041
Bst2UI	CCWGG	4 cut(s)	531, 626, 1545, 1716
Bst4CI	ACNGT	4 cut(s)	743, 1724, 1993, 2086
Bst6I	CTCTTC	4 cut(s)	273, 420, 684, 1876
BstACI	GRCGYC	1 cut(s)	1611
BstAPI	GCANNNNNTGC	1 cut(s)	1385
BstBAI	YACGTR	1 cut(s)	1219
BstC8I	GCNNGC	4 cut(s)	615, 856, 1550, 2119
BstDEI	CTNAG	6 cut(s)	96, 246, 569, 642, 1197, 1909
BstDSI	CCRYGG	2 cut(s)	684, 2052
BstF5I	GGATG	6 cut(s)	526, 1169, 1196, 1326, 1437, 1660
BstHHI	GCGC	2 cut(s)	613, 2117
BstKTI	GATC	8 cut(s)	201, 291, 512, 714, 732, 1145, 1264, 1305
BstMAI	GTCTC	3 cut(s)	638, 662, 1111
BstMBI	GATC	8 cut(s)	198, 288, 509, 711, 729, 1142, 1261, 1302
BstMWI	GCNNNNNNNGC	7 cut(s)	376, 614, 680, 1289, 1385, 1407, 1774
BstNI	CCWGG	4 cut(s)	531, 626, 1545, 1716
BstNSI	RCATGY	2 cut(s)	1183, 1465
BstPAI	GACNNNNGTC	1 cut(s)	570
BstSCI	CCNGG	5 cut(s)	141, 529, 624, 1543, 1714
BstSFI	CTRYAG	1 cut(s)	1255
BstSLI	GKGCMC	1 cut(s)	868
BstV1I	GCAGC	3 cut(s)	595, 1561, 1956
BstV2I	GAAGAC	1 cut(s)	80
BstX2I	RGATCY	3 cut(s)	288, 509, 1261
BstXI	CCANNNNNNTGG	1 cut(s)	1561
BstYI	RGATCY	3 cut(s)	288, 509, 1261
BtgI	CCRYGG	2 cut(s)	684, 2052
BtsCI	GGATG	6 cut(s)	526, 1169, 1196, 1326, 1437, 1660
BtsI	GCAGTG	1 cut(s)	1655
BtsIMutI	CAGTG	5 cut(s)	299, 748, 1028, 1561, 1655
Cac8I	GCNNGC	4 cut(s)	615, 856, 1550, 2119
CciI	TCATGA	2 cut(s)	574, 660
CfoI	GCGC	2 cut(s)	613, 2117
Cfr13I	GGNCC	2 cut(s)	353, 975
CseI	GACGC	1 cut(s)	1267
CsiI	ACCWGGT	1 cut(s)	624
Csp6I	GTAC	3 cut(s)	953, 1131, 1748
CviQI	GTAC	3 cut(s)	953, 1131, 1748
DdeI	CTNAG	6 cut(s)	96, 246, 569, 642, 1197, 1909
DpnI	GATC	8 cut(s)	200, 290, 511, 713, 731, 1144, 1263, 1304
DpnII	GATC	8 cut(s)	198, 288, 509, 711, 729, 1142, 1261, 1302
DraI	TTTAAA	1 cut(s)	1123
Eam1104I	CTCTTC	4 cut(s)	273, 420, 684, 1876
EarI	CTCTTC	4 cut(s)	273, 420, 684, 1876
Ecl136II	GAGCTC	1 cut(s)	1709
Eco130I	CCWWGG	3 cut(s)	30, 684, 791
Eco24I	GRGCYC	2 cut(s)	1554, 1711
Eco47I	GGWCC	2 cut(s)	353, 975
Eco53kI	GAGCTC	1 cut(s)	1709
Eco57I	CTGAAG	1 cut(s)	1143
Eco72I	CACGTG	1 cut(s)	1219
Eco88I	CYCGRG	1 cut(s)	1894
EcoICRI	GAGCTC	1 cut(s)	1709
EcoO109I	RGGNCCY	2 cut(s)	353, 975
EcoRI	GAATTC	1 cut(s)	55
EcoRII	CCWGG	4 cut(s)	529, 624, 1543, 1714
EcoT14I	CCWWGG	3 cut(s)	30, 684, 791
EcoT22I	ATGCAT	1 cut(s)	1169
EcoT38I	GRGCYC	2 cut(s)	1554, 1711
ErhI	CCWWGG	3 cut(s)	30, 684, 791
FaqI	GGGAC	1 cut(s)	988
FauI	CCCGC	1 cut(s)	1502
FauNDI	CATATG	2 cut(s)	499, 1285
FblI	GTMKAC	1 cut(s)	909
Fnu4HI	GCNGC	5 cut(s)	504, 609, 675, 1575, 1945
FokI	GGATG	6 cut(s)	533, 1176, 1203, 1333, 1444, 1667
FriOI	GRGCYC	2 cut(s)	1554, 1711
Fsp4HI	GCNGC	5 cut(s)	504, 609, 675, 1575, 1945
FspBI	CTAG	5 cut(s)	179, 507, 614, 1362, 1932
GlaI	GCGC	2 cut(s)	612, 2116
GluI	GCNGC	5 cut(s)	504, 609, 675, 1575, 1945
GsuI	CTGGAG	2 cut(s)	1298, 1725
HapII	CCGG	3 cut(s)	143, 518, 816
HgaI	GACGC	1 cut(s)	1267
HhaI	GCGC	2 cut(s)	613, 2117
Hin1I	GRCGYC	1 cut(s)	1611
Hin6I	GCGC	2 cut(s)	611, 2115
HinP1I	GCGC	2 cut(s)	611, 2115
HincII	GTYRAC	3 cut(s)	495, 880, 1867
HindII	GTYRAC	3 cut(s)	495, 880, 1867
HindIII	AAGCTT	2 cut(s)	1418, 1472
HinfI	GANTC	9 cut(s)	226, 238, 488, 830, 842, 1171, 1518, 1868, 2048
HpaII	CCGG	3 cut(s)	143, 518, 816
HphI	GGTGA	7 cut(s)	47, 74, 519, 1017, 1105, 1871, 2016
Hpy166II	GTNNAC	6 cut(s)	495, 866, 880, 910, 1867, 1982
Hpy188I	TCNGA	4 cut(s)	565, 1495, 1876, 1912
Hpy8I	GTNNAC	6 cut(s)	495, 866, 880, 910, 1867, 1982
Hpy99I	CGWCG	3 cut(s)	162, 1283, 1571
HpyAV	CCTTC	5 cut(s)	458, 1167, 1391, 2026, 2037
HpyCH4III	ACNGT	4 cut(s)	743, 1724, 1993, 2086
HpyCH4IV	ACGT	5 cut(s)	157, 1218, 1353, 1611, 2043
HpyF10VI	GCNNNNNNNGC	7 cut(s)	376, 614, 680, 1289, 1385, 1407, 1774
HpyF3I	CTNAG	6 cut(s)	96, 246, 569, 642, 1197, 1909
HpySE526I	ACGT	5 cut(s)	157, 1218, 1353, 1611, 2043
Hsp92I	GRCGYC	1 cut(s)	1611
HspAI	GCGC	2 cut(s)	611, 2115
KflI	GGGWCCC	1 cut(s)	975
Kzo9I	GATC	8 cut(s)	198, 288, 509, 711, 729, 1142, 1261, 1302
LguI	GCTCTTC	1 cut(s)	420
LmnI	GCTCC	6 cut(s)	26, 175, 1289, 1376, 1706, 1825
Lsp1109I	GCAGC	3 cut(s)	595, 1561, 1956
LweI	GCATC	4 cut(s)	59, 883, 1154, 1181
MabI	ACCWGGT	1 cut(s)	624
MaeI	CTAG	5 cut(s)	179, 507, 614, 1362, 1932
MaeII	ACGT	5 cut(s)	157, 1218, 1353, 1611, 2043
MaeIII	GTNAC	5 cut(s)	599, 743, 928, 1201, 1306
MalI	GATC	8 cut(s)	200, 290, 511, 713, 731, 1144, 1263, 1304
MbiI	CCGCTC	1 cut(s)	275
MboI	GATC	8 cut(s)	198, 288, 509, 711, 729, 1142, 1261, 1302
MboII	GAAGA	7 cut(s)	85, 260, 337, 437, 701, 1615, 1863
MfeI	CAATTG	4 cut(s)	416, 872, 924, 945
MflI	RGATCY	3 cut(s)	288, 509, 1261
MhlI	GDGCHC	5 cut(s)	823, 868, 1294, 1554, 1711
MlyI	GAGTC	6 cut(s)	220, 232, 839, 1527, 1862, 2057
MmeI	TCCRAC	3 cut(s)	762, 944, 1724
Mph1103I	ATGCAT	1 cut(s)	1169
MseI	TTAA	9 cut(s)	312, 539, 585, 762, 806, 1122, 1437, 1617, 2128
MslI	CAYNNNNRTG	3 cut(s)	1091, 1297, 1974
MspA1I	CMGCKG	1 cut(s)	674
MspI	CCGG	3 cut(s)	143, 518, 816
MspR9I	CCNGG	5 cut(s)	143, 531, 626, 1545, 1716
MunI	CAATTG	4 cut(s)	416, 872, 924, 945
Mva1269I	GAATGC	1 cut(s)	415
MvaI	CCWGG	4 cut(s)	531, 626, 1545, 1716
MwoI	GCNNNNNNNGC	7 cut(s)	376, 614, 680, 1289, 1385, 1407, 1774
NciI	CCSGG	1 cut(s)	143
NcoI	CCATGG	1 cut(s)	684
NdeI	CATATG	2 cut(s)	499, 1285
NdeII	GATC	8 cut(s)	198, 288, 509, 711, 729, 1142, 1261, 1302
NheI	GCTAGC	1 cut(s)	613
NlaIV	GGNNCC	6 cut(s)	28, 212, 290, 976, 977, 2013
NmuCI	GTSAC	2 cut(s)	743, 928
NsiI	ATGCAT	1 cut(s)	1169
NspI	RCATGY	2 cut(s)	1183, 1465
OliI	CACNNNNGTG	1 cut(s)	1091
PagI	TCATGA	2 cut(s)	574, 660
PciSI	GCTCTTC	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	2 cut(s)	1224, 2049
PctI	GAATGC	1 cut(s)	415
PfeI	GAWTC	3 cut(s)	488, 842, 1171
PflMI	CCANNNNNTGG	2 cut(s)	1432, 2008
PfoI	TCCNGGA	1 cut(s)	1714
PkrI	GCNGC	5 cut(s)	505, 610, 676, 1576, 1946
PleI	GAGTC	6 cut(s)	220, 232, 838, 1526, 1862, 2056
PmaCI	CACGTG	1 cut(s)	1219
PmlI	CACGTG	1 cut(s)	1219
PpsI	GAGTC	6 cut(s)	220, 232, 838, 1526, 1862, 2056
Ppu21I	YACGTR	1 cut(s)	1219
PpuMI	RGGWCCY	2 cut(s)	353, 975
PshAI	GACNNNNGTC	1 cut(s)	570
PshBI	ATTAAT	1 cut(s)	585
Psp124BI	GAGCTC	1 cut(s)	1711
Psp1406I	AACGTT	1 cut(s)	2043
Psp5II	RGGWCCY	2 cut(s)	353, 975
Psp6I	CCWGG	4 cut(s)	529, 624, 1543, 1714
PspCI	CACGTG	1 cut(s)	1219
PspGI	CCWGG	4 cut(s)	529, 624, 1543, 1714
PspN4I	GGNNCC	6 cut(s)	28, 212, 290, 976, 977, 2013
PspPI	GGNCC	2 cut(s)	353, 975
PspPPI	RGGWCCY	2 cut(s)	353, 975
PsuI	RGATCY	3 cut(s)	288, 509, 1261
RsaI	GTAC	3 cut(s)	954, 1132, 1749
RsaNI	GTAC	3 cut(s)	953, 1131, 1748
RseI	CAYNNNNRTG	3 cut(s)	1091, 1297, 1974
SacI	GAGCTC	1 cut(s)	1711
SapI	GCTCTTC	1 cut(s)	420
SaqAI	TTAA	9 cut(s)	312, 539, 585, 762, 806, 1122, 1437, 1617, 2128
SatI	GCNGC	5 cut(s)	504, 609, 675, 1575, 1945
Sau3AI	GATC	8 cut(s)	198, 288, 509, 711, 729, 1142, 1261, 1302
Sau96I	GGNCC	2 cut(s)	353, 975
ScaI	AGTACT	2 cut(s)	954, 1132
SchI	GAGTC	6 cut(s)	220, 232, 839, 1527, 1862, 2057
ScrFI	CCNGG	5 cut(s)	143, 531, 626, 1545, 1716
SduI	GDGCHC	5 cut(s)	823, 868, 1294, 1554, 1711
SexAI	ACCWGGT	1 cut(s)	624
SfaNI	GCATC	4 cut(s)	59, 883, 1154, 1181
SfcI	CTRYAG	1 cut(s)	1255
SinI	GGWCC	2 cut(s)	353, 975
SmiMI	CAYNNNNRTG	3 cut(s)	1091, 1297, 1974
SsiI	CCGC	8 cut(s)	85, 275, 473, 504, 674, 709, 1060, 1509
SspMI	CTAG	5 cut(s)	179, 507, 614, 1362, 1932
SstI	GAGCTC	1 cut(s)	1711
StyD4I	CCNGG	5 cut(s)	141, 529, 624, 1543, 1714
StyI	CCWWGG	3 cut(s)	30, 684, 791
TaaI	ACNGT	4 cut(s)	743, 1724, 1993, 2086
TaiI	ACGT	5 cut(s)	160, 1221, 1356, 1614, 2046
TaqI	TCGA	9 cut(s)	53, 114, 271, 1077, 1227, 1347, 1516, 1827, 1940
TatI	WGTACW	2 cut(s)	952, 1130
TauI	GCSGC	2 cut(s)	506, 677
TfiI	GAWTC	3 cut(s)	488, 842, 1171
Tru1I	TTAA	9 cut(s)	312, 539, 585, 762, 806, 1122, 1437, 1617, 2128
Tru9I	TTAA	9 cut(s)	312, 539, 585, 762, 806, 1122, 1437, 1617, 2128
TscAI	CASTG	5 cut(s)	299, 748, 1035, 1561, 1655
TseFI	GTSAC	2 cut(s)	743, 928
TseI	GCWGC	3 cut(s)	608, 1574, 1944
Tsp45I	GTSAC	2 cut(s)	743, 928
TspDTI	ATGAA	9 cut(s)	30, 54, 591, 783, 1347, 1430, 1647, 1694, 1891
TspGWI	ACGGA	2 cut(s)	1683, 2041
TspRI	CASTG	5 cut(s)	299, 748, 1035, 1561, 1655
Van91I	CCANNNNNTGG	2 cut(s)	1432, 2008
VneI	GTGCAC	1 cut(s)	864
VpaK11BI	GGWCC	2 cut(s)	353, 975
VspI	ATTAAT	1 cut(s)	585
XapI	RAATTY	4 cut(s)	55, 578, 702, 1370
XceI	RCATGY	2 cut(s)	1183, 1465
XmiI	GTMKAC	1 cut(s)	909
XspI	CTAG	5 cut(s)	179, 507, 614, 1362, 1932
ZraI	GACGTC	1 cut(s)	1612
ZrmI	AGTACT	2 cut(s)	954, 1132
Zsp2I	ATGCAT	1 cut(s)	1169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.