Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005170

Physical Location & Seq

Genomic Coordinates Reverse (-)

2478880 .. 2479330

Gene Structure 451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g03211.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGCCGACGCCGGCATCCACCCCTACCACCAGCAATGGGCCCCGGCGGCAGCCCCTCCTCCTCCCCCGATCGTTGTCGCTGCCATTCTTAACTCTGAGAGGCATGCTGATAATTCGTCGAGGCTATACGAGCCAAGCAAAGAGCTGATATCCAAAGAAAATCTCCGTATTTACCGAACAGTCACTATGAAAGAATATTTTGTGGAATATCACAAAAACATCCTAAATGGGGTCTTTGCCCTAGAATCTTTGAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

87

Amino Acids

9.74

Weight (kDa)

6.9

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005170)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03211 FvH4_2g21890
malus_domestica	MD05G1014100.v1.1
prunus_persica	Prupe.8G226600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0392041 RchiOBHm_Chr6g0288791
rosa_laevigata	RLG00000009843 RLG00000012366 RLG00000012368 RLG00000012372 RLG00000012377 RLG00000012378 RLG00000012380
rosa_multiflora	Rmu_co8406507.1_g000001 Rmu_sc0004928.1_g000001 Rmu_sc0005091.1_g000008 Rmu_sc0005314.1_g000026
rosa_roxburghii	Rroxscaffold_7G00179880 Rroxscaffold_7G00179900
rosa_rugosa	Rorug04G0006500 Rorug06G0198100 Rorug06G0198200 Rorug06G0198300
rosa_samantha	Rh4CG043100 Rh6AG045200 Rh6BG315200 Rh6BG315400 Rh6CG322900 Rh6DG308600
rosa_wichuraiana	Rw6G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	47
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	9
AfiI	CCNNNNNNNGG	2 cut(s)	37, 229
AgsI	TTSAA	1 cut(s)	253
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
AoxI	GGCC	2 cut(s)	3, 39
ApaI	GGGCCC	1 cut(s)	43
ApeKI	GCWGC	2 cut(s)	50, 80
AspS9I	GGNCC	2 cut(s)	39, 40
AsuC2I	CCSGG	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	62, 67
BcnI	CCSGG	1 cut(s)	44
BfaI	CTAG	1 cut(s)	242
BglI	GCCNNNNNGGC	1 cut(s)	47
BisI	GCNGC	3 cut(s)	48, 51, 81
BlsI	GCNGC	3 cut(s)	49, 52, 82
Bme1390I	CCNGG	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	39, 40
BmiI	GGNNCC	2 cut(s)	41, 42
BmrFI	CCNGG	1 cut(s)	44
BmsI	GCATC	1 cut(s)	24
BpuMI	CCSGG	1 cut(s)	44
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 229
Bse118I	RCCGGY	1 cut(s)	11
Bse3DI	GCAATG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	2 cut(s)	15, 219
BseLI	CCNNNNNNNGG	2 cut(s)	37, 229
BseMI	GCAATG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	87
BseRI	GAGGAG	2 cut(s)	48, 51
BseSI	GKGCMC	1 cut(s)	43
BseXI	GCAGC	2 cut(s)	62, 67
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	5, 41
BsiEI	CGRYCG	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	12, 44
BslI	CCNNNNNNNGG	2 cut(s)	37, 229
BsnI	GGCC	2 cut(s)	5, 41
Bsp120I	GGGCCC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	69
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	2 cut(s)	5, 41
BspCNI	CTCAG	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	41, 42
BsrDI	GCAATG	1 cut(s)	41
BsrFI	RCCGGY	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	1 cut(s)	69
BssNI	GRCGYC	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	181
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	13, 105
BstDEI	CTNAG	1 cut(s)	96
BstF5I	GGATG	2 cut(s)	15, 219
BstKTI	GATC	1 cut(s)	72
BstMBI	GATC	1 cut(s)	69
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 130
BstNSI	RCATGY	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	42
BstSLI	GKGCMC	1 cut(s)	43
BstV1I	GCAGC	2 cut(s)	62, 67
BsuRI	GGCC	2 cut(s)	5, 41
BtsCI	GGATG	2 cut(s)	15, 219
Cac8I	GCNNGC	2 cut(s)	13, 105
Cfr10I	RCCGGY	1 cut(s)	11
Cfr13I	GGNCC	2 cut(s)	39, 40
CseI	GACGC	1 cut(s)	17
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	6 cut(s)	5, 41, 53, 124, 133, 145
CviKI_1	RGCY	6 cut(s)	5, 41, 53, 124, 133, 145
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	43
Eco32I	GATATC	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRV	GATATC	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	43
FaeI	CATG	1 cut(s)	107
FaiI	YATR	3 cut(s)	105, 127, 188
FatI	CATG	1 cut(s)	103
Fnu4HI	GCNGC	3 cut(s)	48, 51, 81
FokI	GGATG	2 cut(s)	2, 206
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	3 cut(s)	48, 51, 81
FspBI	CTAG	1 cut(s)	242
GluI	GCNGC	3 cut(s)	48, 51, 81
HaeIII	GGCC	2 cut(s)	5, 41
HapII	CCGG	2 cut(s)	12, 44
HgaI	GACGC	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	107
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	2 cut(s)	12, 44
Hpy188I	TCNGA	1 cut(s)	97
Hpy99I	CGWCG	2 cut(s)	11, 121
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 130
HpyF3I	CTNAG	1 cut(s)	96
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	107
KroI	GCCGGC	1 cut(s)	11
KroNI	GCCGGC	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	69
LpnPI	CCDG	3 cut(s)	25, 44, 57
Lsp1109I	GCAGC	2 cut(s)	62, 67
LweI	GCATC	1 cut(s)	24
MaeI	CTAG	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	1 cut(s)	112
MnlI	CCTC	5 cut(s)	66, 69, 72, 93, 114
MroNI	GCCGGC	1 cut(s)	11
MseI	TTAA	1 cut(s)	90
MspI	CCGG	2 cut(s)	12, 44
MspR9I	CCNGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	2 cut(s)	47, 130
NaeI	GCCGGC	1 cut(s)	13
NciI	CCSGG	1 cut(s)	44
NdeII	GATC	1 cut(s)	69
NgoMIV	GCCGGC	1 cut(s)	11
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	2 cut(s)	41, 42
NmuCI	GTSAC	1 cut(s)	181
NspI	RCATGY	1 cut(s)	107
PaeI	GCATGC	1 cut(s)	107
PdiI	GCCGGC	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	3 cut(s)	49, 52, 82
Ple19I	CGATCG	1 cut(s)	72
PspN4I	GGNNCC	2 cut(s)	41, 42
PspOMI	GGGCCC	1 cut(s)	39
PspPI	GGNCC	2 cut(s)	39, 40
PvuI	CGATCG	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	3 cut(s)	48, 51, 81
Sau3AI	GATC	1 cut(s)	69
Sau96I	GGNCC	2 cut(s)	39, 40
ScrFI	CCNGG	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	2 cut(s)	147, 258
SfaNI	GCATC	1 cut(s)	24
SphI	GCATGC	1 cut(s)	107
Sse9I	AATT	1 cut(s)	112
SsiI	CCGC	1 cut(s)	47
SspI	AATATT	1 cut(s)	197
SspMI	CTAG	1 cut(s)	242
StyD4I	CCNGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	119
TasI	AATT	1 cut(s)	112
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	2 cut(s)	50, 80
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	203
TspGWI	ACGGA	1 cut(s)	155
XceI	RCATGY	1 cut(s)	107
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.