Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005170

Physical Location & Seq

Genomic Coordinates Reverse (-)

50239827 .. 50247243

Gene Structure 7417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G026750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGAAGCCGTGGGTCATAGTGAGGCCGAGAAGAGGGTGAAAGAATTTCACGAATCCAAAGCTGGTGTCAAAGGAATTGTCGACTCTGGATTGACCAAGATCCCACCAATGTTCGTACACCCTCCAGAGGAGTTGCAACGAAATAACAACATGAATCATGATTTCCGAGTTCCAATGATTGATCTCAAGGGCCTTGATCAGAGCACCGAGAGGCGAAAAGAAGTCATCAATGAGATGAGCAAAGCAGCTGAAGCATGGGGATTCTTTCAGATAGTGAACCATGGAGTTCCACTTGAAGTTATGGAGGAGGTGCTGAAAAGTGTTCGACGATTTCACGAGCAGCCCCATGAAGCCAAGGTGGAGTGGTACTCGCGCGATTTCAAGAAGAAGGCGTTCAACTGCTTCAGCAACGGAGATTTGAAGGCGTCGACTCCGGCTGGCTGGAGGGACAGTTTCTCCTGGCAGCTGCAGTTCCCAGAAGATGAAGGCAACTCTCAAGCACTGCCTCAAGTCTGCAGAAGGGAAATTGTCGAGTACGGTAAGCACATGACTCAACTACAAGAGAAGCTCTCTGAATTATTGTCCGAAGCTTTAGGTCTGAGCACTGACTACCTTTCAAGCCTAGGGTGCTTTAAGTCGACATCACTGGTTGGCCACTATTACCCGGACATCTCCTTTCTCACTCTGCTCCTTCAAGACAGTGTCGGTGGCCTCCAAGTGCTTCATCAAAATGTTTGGGTGGATGTGCCACCAGTGCAAGGAGCTTTGGTAGCAAATCTAGGCGACTTGATGCAGATCACTAGTAATGACAAGTTCAAGAGTGTGGAGCACAGAGTTTTGGCAACCAGGACCGCGGAACCCCGAACATCAGTTGCATGTTTTTTCAGTGCAGAGGACAAGCTCAAACCATTTGGGCCGTTCAAGGAGCTTGTTTCCGAAACCCATTTCCCCTCGGATTCTAACGTTAACACCCATCCCCCAATTTACAGAGACAATATCAGTTTTGGAGAATACATGGCATATTATAGGCTCAAGGGGCAAGATGGAAACTCTTCTCTGCCTCTGTTTAGACTCGTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

360

Amino Acids

40.86

Weight (kDa)

5.98

Isoelectric Point (pI)

38.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	57 - 163	1.5e-21	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	219 - 296	2.7e-22	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005170)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03211 FvH4_2g21890
malus_domestica	MD05G1014100.v1.1
prunus_persica	Prupe.8G226600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0392041 RchiOBHm_Chr6g0288791
rosa_laevigata	RLG00000009843 RLG00000012366 RLG00000012368 RLG00000012372 RLG00000012377 RLG00000012378 RLG00000012380
rosa_multiflora	Rmu_co8406507.1_g000001 Rmu_sc0004928.1_g000001 Rmu_sc0005091.1_g000008 Rmu_sc0005314.1_g000026
rosa_roxburghii	Rroxscaffold_7G00179880 Rroxscaffold_7G00179900
rosa_rugosa	Rorug04G0006500 Rorug06G0198100 Rorug06G0198200 Rorug06G0198300
rosa_samantha	Rh4CG043100 Rh6AG045200 Rh6BG315200 Rh6BG315400 Rh6CG322900 Rh6DG308600
rosa_wichuraiana	Rw6G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	81, 428, 638
AccII	CGCG	3 cut(s)	373, 375, 854
AciI	CCGC	2 cut(s)	852, 854
AclI	AACGTT	1 cut(s)	963
AclWI	GGATC	1 cut(s)	94
AcoI	YGGCCR	1 cut(s)	652
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	2 cut(s)	270, 388
AcyI	GRCGYC	1 cut(s)	425
AfaI	GTAC	3 cut(s)	117, 368, 536
AfiI	CCNNNNNNNGG	3 cut(s)	33, 127, 758
AgsI	TTSAA	8 cut(s)	296, 382, 397, 421, 618, 695, 817, 922
AhlI	ACTAGT	1 cut(s)	800
AjnI	CCWGG	2 cut(s)	458, 845
AluBI	AGCT	8 cut(s)	62, 248, 466, 568, 590, 764, 901, 928
AluI	AGCT	8 cut(s)	62, 248, 466, 568, 590, 764, 901, 928
Alw21I	GWGCWC	3 cut(s)	206, 605, 831
Alw26I	GTCTC	1 cut(s)	984
AlwI	GGATC	1 cut(s)	94
AoxI	GGCC	5 cut(s)	24, 190, 652, 709, 914
ApeKI	GCWGC	4 cut(s)	245, 340, 463, 466
ApoI	RAATTY	1 cut(s)	44
ArsI	GACNNNNNNTTYG	4 cut(s)	51, 63, 83, 95
Asp700I	GAANNNNTTC	2 cut(s)	392, 1051
AspA2I	CCTAGG	1 cut(s)	622
AspLEI	GCGC	1 cut(s)	375
AspS9I	GGNCC	3 cut(s)	190, 849, 914
AsuC2I	CCSGG	1 cut(s)	665
AsuHPI	GGTGA	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	849
AvrII	CCTAGG	1 cut(s)	622
BalI	TGGCCA	1 cut(s)	654
BauI	CACGAG	2 cut(s)	335, 1073
Bbv12I	GWGCWC	3 cut(s)	206, 605, 831
BbvI	GCAGC	4 cut(s)	257, 352, 453, 475
BccI	CCATC	2 cut(s)	981, 1037
BceAI	ACGGC	1 cut(s)	901
BciT130I	CCWGG	2 cut(s)	460, 847
BclI	TGATCA	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	665
BcoDI	GTCTC	1 cut(s)	984
BcuI	ACTAGT	1 cut(s)	800
BfaI	CTAG	3 cut(s)	623, 779, 801
BfmI	CTRYAG	2 cut(s)	467, 514
BisI	GCNGC	4 cut(s)	246, 341, 464, 467
BlnI	CCTAGG	1 cut(s)	622
BlsI	GCNGC	4 cut(s)	247, 342, 465, 468
Bme1390I	CCNGG	3 cut(s)	460, 665, 847
Bme18I	GGWCC	1 cut(s)	849
BmgT120I	GGNCC	3 cut(s)	190, 849, 914
BmiI	GGNNCC	1 cut(s)	858
BmrFI	CCNGG	3 cut(s)	460, 665, 847
BmsI	GCATC	1 cut(s)	780
BplI	GAGNNNNNCTC	4 cut(s)	353, 385, 554, 586
BpmI	CTGGAG	2 cut(s)	108, 463
BpuEI	CTTGAG	4 cut(s)	170, 480, 492, 1016
BpuMI	CCSGG	1 cut(s)	665
BsaBI	GATNNNNATC	1 cut(s)	794
BsaHI	GRCGYC	1 cut(s)	425
BsaJI	CCNNGG	6 cut(s)	9, 280, 354, 622, 852, 951
BsaXI	ACNNNNNCTCC	6 cut(s)	436, 440, 466, 470, 753, 783
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 127, 758
Bse1I	ACTGG	2 cut(s)	651, 752
Bse8I	GATNNNNATC	1 cut(s)	794
BseBI	CCWGG	2 cut(s)	460, 847
BseDI	CCNNGG	6 cut(s)	9, 280, 354, 622, 852, 951
BseGI	GGATG	2 cut(s)	748, 973
BseJI	GATNNNNATC	1 cut(s)	794
BseLI	CCNNNNNNNGG	3 cut(s)	33, 127, 758
BseMII	CTCAG	1 cut(s)	590
BseNI	ACTGG	2 cut(s)	651, 752
BseRI	GAGGAG	2 cut(s)	143, 320
BseXI	GCAGC	4 cut(s)	257, 352, 453, 475
BsgI	GTGCAG	1 cut(s)	909
Bsh1236I	CGCG	3 cut(s)	373, 375, 854
BshFI	GGCC	5 cut(s)	26, 192, 654, 711, 916
BsiHKAI	GWGCWC	3 cut(s)	206, 605, 831
BsiSI	CCGG	2 cut(s)	434, 665
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	3 cut(s)	33, 127, 758
BsmAI	GTCTC	1 cut(s)	984
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	5 cut(s)	26, 192, 654, 711, 916
Bsp1286I	GDGCHC	3 cut(s)	206, 605, 831
Bsp143I	GATC	4 cut(s)	99, 181, 196, 795
Bsp19I	CCATGG	1 cut(s)	280
BspACI	CCGC	2 cut(s)	852, 854
BspANI	GGCC	5 cut(s)	26, 192, 654, 711, 916
BspCNI	CTCAG	1 cut(s)	591
BspFNI	CGCG	3 cut(s)	373, 375, 854
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	858
BspMAI	CTGCAG	2 cut(s)	471, 518
BspPI	GGATC	1 cut(s)	94
BsrI	ACTGG	2 cut(s)	651, 752
BssECI	CCNNGG	6 cut(s)	9, 280, 354, 622, 852, 951
BssMI	GATC	4 cut(s)	99, 181, 196, 795
BssNI	GRCGYC	1 cut(s)	425
BssSI	CACGAG	2 cut(s)	335, 1073
BssT1I	CCWWGG	3 cut(s)	280, 354, 622
Bst2BI	CACGAG	2 cut(s)	335, 1073
Bst2UI	CCWGG	2 cut(s)	460, 847
Bst4CI	ACNGT	3 cut(s)	452, 539, 701
Bst6I	CTCTTC	2 cut(s)	26, 1057
BstACI	GRCGYC	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	1 cut(s)	599
BstDSI	CCRYGG	3 cut(s)	9, 280, 852
BstF5I	GGATG	2 cut(s)	748, 973
BstFNI	CGCG	3 cut(s)	373, 375, 854
BstHHI	GCGC	1 cut(s)	375
BstKTI	GATC	4 cut(s)	102, 184, 199, 798
BstMAI	GTCTC	1 cut(s)	984
BstMBI	GATC	4 cut(s)	99, 181, 196, 795
BstMWI	GCNNNNNNNGC	5 cut(s)	251, 627, 754, 770, 1036
BstNI	CCWGG	2 cut(s)	460, 847
BstNSI	RCATGY	1 cut(s)	879
BstSCI	CCNGG	3 cut(s)	458, 663, 845
BstSFI	CTRYAG	2 cut(s)	467, 514
BstUI	CGCG	3 cut(s)	373, 375, 854
BstV1I	GCAGC	4 cut(s)	257, 352, 453, 475
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BsuRI	GGCC	5 cut(s)	26, 192, 654, 711, 916
BtgI	CCRYGG	3 cut(s)	9, 280, 852
BtsCI	GGATG	2 cut(s)	748, 973
BtsI	GCAGTG	1 cut(s)	500
BtsIMutI	CAGTG	6 cut(s)	500, 603, 644, 706, 759, 892
Cac8I	GCNNGC	1 cut(s)	439
CciI	TCATGA	1 cut(s)	157
CfoI	GCGC	1 cut(s)	375
Cfr13I	GGNCC	3 cut(s)	190, 849, 914
Cfr42I	CCGCGG	1 cut(s)	855
CseI	GACGC	1 cut(s)	414
Csp6I	GTAC	3 cut(s)	116, 367, 535
CviAII	CATG	8 cut(s)	151, 158, 255, 281, 347, 547, 876, 1015
CviQI	GTAC	3 cut(s)	116, 367, 535
DdeI	CTNAG	1 cut(s)	599
DpnI	GATC	4 cut(s)	101, 183, 198, 797
DpnII	GATC	4 cut(s)	99, 181, 196, 795
EaeI	YGGCCR	1 cut(s)	652
Eam1104I	CTCTTC	2 cut(s)	26, 1057
EarI	CTCTTC	2 cut(s)	26, 1057
Eco130I	CCWWGG	3 cut(s)	280, 354, 622
Eco47I	GGWCC	1 cut(s)	849
Eco57I	CTGAAG	2 cut(s)	270, 388
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRII	CCWGG	2 cut(s)	458, 845
EcoT14I	CCWWGG	3 cut(s)	280, 354, 622
ErhI	CCWWGG	3 cut(s)	280, 354, 622
FaeI	CATG	8 cut(s)	154, 161, 258, 284, 350, 550, 879, 1018
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	8 cut(s)	150, 157, 254, 280, 346, 546, 875, 1014
FbaI	TGATCA	1 cut(s)	196
FblI	GTMKAC	3 cut(s)	81, 428, 638
Fnu4HI	GCNGC	4 cut(s)	246, 341, 464, 467
FokI	GGATG	2 cut(s)	755, 960
Fsp4HI	GCNGC	4 cut(s)	246, 341, 464, 467
FspBI	CTAG	3 cut(s)	623, 779, 801
GlaI	GCGC	1 cut(s)	374
GluI	GCNGC	4 cut(s)	246, 341, 464, 467
GsuI	CTGGAG	2 cut(s)	108, 463
HaeIII	GGCC	5 cut(s)	26, 192, 654, 711, 916
HapII	CCGG	2 cut(s)	434, 665
HgaI	GACGC	1 cut(s)	414
HhaI	GCGC	1 cut(s)	375
Hin1I	GRCGYC	1 cut(s)	425
Hin1II	CATG	8 cut(s)	154, 161, 258, 284, 350, 550, 879, 1018
Hin6I	GCGC	1 cut(s)	373
HinP1I	GCGC	1 cut(s)	373
HincII	GTYRAC	4 cut(s)	82, 429, 639, 967
HindII	GTYRAC	4 cut(s)	82, 429, 639, 967
HindIII	AAGCTT	1 cut(s)	588
HinfI	GANTC	8 cut(s)	53, 83, 154, 261, 430, 550, 956, 1071
HpaI	GTTAAC	1 cut(s)	967
HpaII	CCGG	2 cut(s)	434, 665
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	6 cut(s)	82, 118, 277, 429, 639, 967
Hpy188I	TCNGA	8 cut(s)	167, 201, 270, 574, 586, 600, 937, 955
Hpy188III	TCNNGA	8 cut(s)	50, 87, 125, 158, 335, 382, 695, 817
Hpy8I	GTNNAC	6 cut(s)	82, 118, 277, 429, 639, 967
Hpy99I	CGWCG	2 cut(s)	330, 430
HpyAV	CCTTC	5 cut(s)	382, 415, 479, 513, 701
HpyCH4III	ACNGT	3 cut(s)	452, 539, 701
HpyCH4IV	ACGT	1 cut(s)	963
HpyCH4V	TGCA	8 cut(s)	136, 469, 516, 757, 793, 875, 890, 1078
HpyF10VI	GCNNNNNNNGC	5 cut(s)	251, 627, 754, 770, 1036
HpyF3I	CTNAG	1 cut(s)	599
HpySE526I	ACGT	1 cut(s)	963
Hsp92I	GRCGYC	1 cut(s)	425
Hsp92II	CATG	8 cut(s)	154, 161, 258, 284, 350, 550, 879, 1018
HspAI	GCGC	1 cut(s)	373
Ksp22I	TGATCA	1 cut(s)	196
KspAI	GTTAAC	1 cut(s)	967
KspI	CCGCGG	1 cut(s)	855
Kzo9I	GATC	4 cut(s)	99, 181, 196, 795
LmnI	GCTCC	4 cut(s)	693, 761, 826, 925
Lsp1109I	GCAGC	4 cut(s)	257, 352, 453, 475
LweI	GCATC	1 cut(s)	780
MaeI	CTAG	3 cut(s)	623, 779, 801
MaeII	ACGT	1 cut(s)	963
MalI	GATC	4 cut(s)	101, 183, 198, 797
MboI	GATC	4 cut(s)	99, 181, 196, 795
MboII	GAAGA	4 cut(s)	43, 397, 491, 1044
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	3 cut(s)	206, 605, 831
MlsI	TGGCCA	1 cut(s)	654
MluCI	AATT	5 cut(s)	44, 75, 525, 575, 981
MluNI	TGGCCA	1 cut(s)	654
MlyI	GAGTC	4 cut(s)	77, 424, 544, 1065
Mox20I	TGGCCA	1 cut(s)	654
MroXI	GAANNNNTTC	2 cut(s)	392, 1051
MscI	TGGCCA	1 cut(s)	654
MseI	TTAA	3 cut(s)	633, 966, 1081
MslI	CAYNNNNRTG	1 cut(s)	729
Msp20I	TGGCCA	1 cut(s)	654
MspA1I	CMGCKG	3 cut(s)	248, 466, 854
MspI	CCGG	2 cut(s)	434, 665
MspR9I	CCNGG	3 cut(s)	460, 665, 847
MvaI	CCWGG	2 cut(s)	460, 847
MvnI	CGCG	3 cut(s)	373, 375, 854
MwoI	GCNNNNNNNGC	5 cut(s)	251, 627, 754, 770, 1036
NciI	CCSGG	1 cut(s)	665
NcoI	CCATGG	1 cut(s)	280
NdeII	GATC	4 cut(s)	99, 181, 196, 795
NlaIII	CATG	8 cut(s)	154, 161, 258, 284, 350, 550, 879, 1018
NlaIV	GGNNCC	1 cut(s)	858
NmeAIII	GCCGAG	1 cut(s)	52
NspI	RCATGY	1 cut(s)	879
PagI	TCATGA	1 cut(s)	157
PdmI	GAANNNNTTC	2 cut(s)	392, 1051
PfeI	GAWTC	4 cut(s)	53, 154, 261, 956
PflFI	GACNNNGTC	1 cut(s)	701
PkrI	GCNGC	4 cut(s)	247, 342, 465, 468
PleI	GAGTC	4 cut(s)	77, 424, 544, 1065
PpsI	GAGTC	4 cut(s)	77, 424, 544, 1065
Psp1406I	AACGTT	1 cut(s)	963
Psp6I	CCWGG	2 cut(s)	458, 845
PspGI	CCWGG	2 cut(s)	458, 845
PspN4I	GGNNCC	1 cut(s)	858
PspPI	GGNCC	3 cut(s)	190, 849, 914
PstI	CTGCAG	2 cut(s)	471, 518
PsuI	RGATCY	1 cut(s)	99
PsyI	GACNNNGTC	1 cut(s)	701
PvuII	CAGCTG	2 cut(s)	248, 466
RsaI	GTAC	3 cut(s)	117, 368, 536
RsaNI	GTAC	3 cut(s)	116, 367, 535
RseI	CAYNNNNRTG	1 cut(s)	729
SacII	CCGCGG	1 cut(s)	855
SalI	GTCGAC	3 cut(s)	80, 427, 637
SaqAI	TTAA	3 cut(s)	633, 966, 1081
SatI	GCNGC	4 cut(s)	246, 341, 464, 467
Sau3AI	GATC	4 cut(s)	99, 181, 196, 795
Sau96I	GGNCC	3 cut(s)	190, 849, 914
SchI	GAGTC	4 cut(s)	77, 424, 544, 1065
ScrFI	CCNGG	3 cut(s)	460, 665, 847
SduI	GDGCHC	3 cut(s)	206, 605, 831
SfaNI	GCATC	1 cut(s)	780
SfcI	CTRYAG	2 cut(s)	467, 514
Sfr303I	CCGCGG	1 cut(s)	855
SgrBI	CCGCGG	1 cut(s)	855
SinI	GGWCC	1 cut(s)	849
SmiMI	CAYNNNNRTG	1 cut(s)	729
SmlI	CTYRAG	4 cut(s)	185, 495, 507, 1031
SmoI	CTYRAG	4 cut(s)	185, 495, 507, 1031
SpeI	ACTAGT	1 cut(s)	800
Sse9I	AATT	5 cut(s)	44, 75, 525, 575, 981
SsiI	CCGC	2 cut(s)	852, 854
SspMI	CTAG	3 cut(s)	623, 779, 801
StyD4I	CCNGG	3 cut(s)	458, 663, 845
StyI	CCWWGG	3 cut(s)	280, 354, 622
TaaI	ACNGT	3 cut(s)	452, 539, 701
TaiI	ACGT	1 cut(s)	966
TaqI	TCGA	5 cut(s)	81, 325, 428, 531, 638
TasI	AATT	5 cut(s)	44, 75, 525, 575, 981
TfiI	GAWTC	4 cut(s)	53, 154, 261, 956
Tru1I	TTAA	3 cut(s)	633, 966, 1081
Tru9I	TTAA	3 cut(s)	633, 966, 1081
TscAI	CASTG	6 cut(s)	507, 610, 651, 706, 759, 892
TseI	GCWGC	4 cut(s)	245, 340, 463, 466
TspDTI	ATGAA	4 cut(s)	167, 363, 498, 713
TspGWI	ACGGA	1 cut(s)	426
TspRI	CASTG	6 cut(s)	507, 610, 651, 706, 759, 892
Tth111I	GACNNNGTC	1 cut(s)	701
VpaK11BI	GGWCC	1 cut(s)	849
XapI	RAATTY	1 cut(s)	44
XceI	RCATGY	1 cut(s)	879
XmaJI	CCTAGG	1 cut(s)	622
XmiI	GTMKAC	3 cut(s)	81, 428, 638
XmnI	GAANNNNTTC	2 cut(s)	392, 1051
XspI	CTAG	3 cut(s)	623, 779, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.