Rroxscaffold_7G00179900

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0005170
Physical Location & Seq
Forward (+)
19409363 .. 19409746
384 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00179900.1

Sequence Viewer

Length: 384 bp
ATGCCCTTTCTCACTTTGCTGCTTCAGGACGGTAGTGGTGGCTTCCAAGTGCTTCATCAAAATGTTTGGGTTAATGTTCCGCCACTGCAGGGAGTTTTGGTAGCAAATATTGGCGACATGATGCAGATCACTAGCAATGACAAGTTCAAGAGTGTGGAGCACAGAGTTTTGGCAACACGGCTTGCGGAGCCCCGAACATCAGTTGCATGTTTCTTCACTGCAGAGGACAAGCTCAAACCATTCGGGCCAATAAAAGAGCTCGTATCAGATATTAATCCCCCAATTTACAGGAACAGTATCAGTTTTGGGGAATACATAGCCTATTATAGGCAGAAGGGACAAGATGGAAACTCTGCAATTCCTCATTTTAGACTCATGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

127

Amino Acids

14.28

Weight (kDa)

8.79

Isoelectric Point (pI)

29.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 2 - 73 5.9e-20 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 80, 185
AcuI CTGAAG 1 cut(s) 8
AfiI CCNNNNNNNGG 2 cut(s) 89, 327
AgsI TTSAA 1 cut(s) 148
AluBI AGCT 2 cut(s) 232, 259
AluI AGCT 2 cut(s) 232, 259
Alw21I GWGCWC 2 cut(s) 162, 261
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 1 cut(s) 19
AseI ATTAAT 1 cut(s) 273
AspS9I GGNCC 1 cut(s) 245
BanII GRGCYC 2 cut(s) 192, 261
Bbv12I GWGCWC 2 cut(s) 162, 261
BbvI GCAGC 1 cut(s) 6
BccI CCATC 1 cut(s) 338
BceAI ACGGC 1 cut(s) 194
BfaI CTAG 1 cut(s) 132
BfmI CTRYAG 2 cut(s) 86, 219
BisI GCNGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 189
BmsI GCATC 1 cut(s) 111
BsaBI GATNNNNATC 2 cut(s) 125, 273
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 327
Bse3DI GCAATG 1 cut(s) 142
Bse8I GATNNNNATC 2 cut(s) 125, 273
BseJI GATNNNNATC 2 cut(s) 125, 273
BseLI CCNNNNNNNGG 2 cut(s) 89, 327
BseMI GCAATG 1 cut(s) 142
BseXI GCAGC 1 cut(s) 6
BshFI GGCC 1 cut(s) 247
BsiHKAI GWGCWC 2 cut(s) 162, 261
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 2 cut(s) 89, 327
BsmFI GGGAC 1 cut(s) 351
BsnI GGCC 1 cut(s) 247
Bsp1286I GDGCHC 3 cut(s) 162, 192, 261
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 2 cut(s) 80, 185
BspANI GGCC 1 cut(s) 247
BspHI TCATGA 1 cut(s) 375
BspLI GGNNCC 1 cut(s) 189
BspMAI CTGCAG 2 cut(s) 90, 223
BsrDI GCAATG 1 cut(s) 142
BssMI GATC 1 cut(s) 126
Bst4CI ACNGT 2 cut(s) 32, 296
BstC8I GCNNGC 1 cut(s) 183
BstENI CCTNNNNNAGG 1 cut(s) 325
BstKTI GATC 1 cut(s) 129
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 1 cut(s) 187
BstNSI RCATGY 1 cut(s) 210
BstSFI CTRYAG 2 cut(s) 86, 219
BstV1I GCAGC 1 cut(s) 6
BsuRI GGCC 1 cut(s) 247
BtsI GCAGTG 2 cut(s) 83, 216
BtsIMutI CAGTG 2 cut(s) 83, 216
Cac8I GCNNGC 1 cut(s) 183
CciI TCATGA 1 cut(s) 375
Cfr13I GGNCC 1 cut(s) 245
CviAII CATG 3 cut(s) 118, 207, 376
CviJI RGCY 7 cut(s) 42, 181, 190, 232, 247, 259, 320
CviKI_1 RGCY 7 cut(s) 42, 181, 190, 232, 247, 259, 320
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
EciI GGCGGA 1 cut(s) 69
Ecl136II GAGCTC 1 cut(s) 259
Eco24I GRGCYC 2 cut(s) 192, 261
Eco53kI GAGCTC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 8
EcoICRI GAGCTC 1 cut(s) 259
EcoNI CCTNNNNNAGG 1 cut(s) 325
EcoT38I GRGCYC 2 cut(s) 192, 261
FaeI CATG 3 cut(s) 121, 210, 379
FaiI YATR 5 cut(s) 119, 208, 317, 327, 377
FaqI GGGAC 1 cut(s) 351
FatI CATG 3 cut(s) 117, 206, 375
Fnu4HI GCNGC 1 cut(s) 20
FriOI GRGCYC 2 cut(s) 192, 261
Fsp4HI GCNGC 1 cut(s) 20
FspBI CTAG 1 cut(s) 132
GluI GCNGC 1 cut(s) 20
HaeIII GGCC 1 cut(s) 247
Hin1II CATG 3 cut(s) 121, 210, 379
HinfI GANTC 1 cut(s) 372
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 3 cut(s) 26, 148, 376
HpyAV CCTTC 1 cut(s) 328
HpyCH4III ACNGT 2 cut(s) 32, 296
HpyCH4V TGCA 5 cut(s) 88, 124, 206, 221, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 187
Hsp92II CATG 3 cut(s) 121, 210, 379
Kzo9I GATC 1 cut(s) 126
LmnI GCTCC 2 cut(s) 157, 187
LpnPI CCDG 3 cut(s) 11, 74, 274
Lsp1109I GCAGC 1 cut(s) 6
LweI GCATC 1 cut(s) 111
MaeI CTAG 1 cut(s) 132
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 1 cut(s) 205
MhlI GDGCHC 3 cut(s) 162, 192, 261
MluCI AATT 2 cut(s) 282, 357
MlyI GAGTC 1 cut(s) 366
MnlI CCTC 2 cut(s) 217, 372
MseI TTAA 2 cut(s) 72, 273
MslI CAYNNNNRTG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 187
NdeII GATC 1 cut(s) 126
NlaIII CATG 3 cut(s) 121, 210, 379
NlaIV GGNNCC 1 cut(s) 189
NspI RCATGY 1 cut(s) 210
PagI TCATGA 1 cut(s) 375
PkrI GCNGC 1 cut(s) 21
PleI GAGTC 1 cut(s) 366
PpsI GAGTC 1 cut(s) 366
PshBI ATTAAT 1 cut(s) 273
Psp124BI GAGCTC 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 1 cut(s) 245
PstI CTGCAG 2 cut(s) 90, 223
RseI CAYNNNNRTG 1 cut(s) 60
SacI GAGCTC 1 cut(s) 261
SaqAI TTAA 2 cut(s) 72, 273
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 1 cut(s) 126
Sau96I GGNCC 1 cut(s) 245
SchI GAGTC 1 cut(s) 366
SduI GDGCHC 3 cut(s) 162, 192, 261
SetI ASST 2 cut(s) 234, 261
SfaNI GCATC 1 cut(s) 111
SfcI CTRYAG 2 cut(s) 86, 219
SmiMI CAYNNNNRTG 1 cut(s) 60
Sse9I AATT 2 cut(s) 282, 357
SsiI CCGC 2 cut(s) 80, 185
SspI AATATT 1 cut(s) 109
SspMI CTAG 1 cut(s) 132
SstI GAGCTC 1 cut(s) 261
TaaI ACNGT 2 cut(s) 32, 296
TasI AATT 2 cut(s) 282, 357
Tru1I TTAA 2 cut(s) 72, 273
Tru9I TTAA 2 cut(s) 72, 273
TscAI CASTG 2 cut(s) 90, 223
TseI GCWGC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 44
TspRI CASTG 2 cut(s) 90, 223
VspI ATTAAT 1 cut(s) 273
XagI CCTNNNNNAGG 1 cut(s) 325
XceI RCATGY 1 cut(s) 210
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.