Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005170

Physical Location & Seq

Genomic Coordinates Forward (+)

18009776 .. 18011065

Gene Structure 1290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012372

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGAAGCTGTGGATCATAGTGAGGCTGAGAAGATGGTGAAAGAATTTGACGAAACCAAAGCTGGTGTCAAAGGAATTGTCGACTCTGGAGTGACCAAGATCCCAAGAATCTTCGTACACCCTCTACAGGATTTGCAACAAAACAACATGGATATCGATCATGATCTCCGAGTTCCAATGATTGATCTCAAAGGCCTTGATCAGAGCCCCGAGAGGCGAAAAGAAGTCATCAATCAGATAAGCAAAGCTGCTGAAGCGTGGGGCTTCTTTCAGATAGTGAACCATGGAGTTCCACTTGATGTTATGGAGGAGGTGCTGAAAAGTGCCCGACGCTTTCACGAGCAGCCCCATGAAGCCAAGGTGGAATGGTACTCACGCGATTTTACAAAAAAGGTAAACTACTTCAGCAATGGCAGTTTGAAGGCGTCCACTCCAGCGGATTGGAGAGACACGTTATCCTGCAACTGCCAGTTCCTAGAAGATGAAAGCAACTTCCAAGCGCTGCCTCGAGTATGCAGATGTGAAATTGTGGAGTACAGTAAGCACTTGACTGTACTCGGGGAGAAACTCTCCGAATTATTGTCTGAAGCTTTAGGCCTAAGCAGTGACTACCTTTCAACCCTAGGGTGCTTCAAATCATCAACACTATTGTGCCATTATTACCCAGTTTGCCCCGAGCCCCATTTGACTTTAGGTGCAACCAAGCACTCGGACATCCCCTTTCTCACTTTGCTGCTTCAGGACAGTAGTGGTGGCTTCCAAGTGCTTCATCAAAATGTTTGGGTTAACGTTCCTCCACTGCAGGGAGTTTTGGTAGCAAATATTGGCGACATGATGCAGATCACTAGCAATGACAAGTTCAAGAGTGTGGAGCACAGAGTTTTGGCAACACGACTTGCGGAGCCCCGAACATCAGTTGCATGTTTCTTCACTGCAGAGGACAAGCTCAAACCATTCGGGCCAATAAAAGATCTCTTATCAGATGTCAATCCCCCAATTTATAGGAACAATATCAGTTTTGGGGAATACATAGCCTATTATAGGCAGAAGGGACAAGATGGAAACTCTGCAATTCCTCATTTTAGACTCATGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

366

Amino Acids

41.32

Weight (kDa)

5.92

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	58 - 163	5.5e-24	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	214 - 311	2e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005170)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03211 FvH4_2g21890
malus_domestica	MD05G1014100.v1.1
prunus_persica	Prupe.8G226600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0392041 RchiOBHm_Chr6g0288791
rosa_laevigata	RLG00000009843 RLG00000012366 RLG00000012368 RLG00000012372 RLG00000012377 RLG00000012378 RLG00000012380
rosa_multiflora	Rmu_co8406507.1_g000001 Rmu_sc0004928.1_g000001 Rmu_sc0005091.1_g000008 Rmu_sc0005314.1_g000026
rosa_roxburghii	Rroxscaffold_7G00179880 Rroxscaffold_7G00179900
rosa_rugosa	Rorug04G0006500 Rorug06G0198100 Rorug06G0198200 Rorug06G0198300
rosa_samantha	Rh4CG043100 Rh6AG045200 Rh6BG315200 Rh6BG315400 Rh6CG322900 Rh6DG308600
rosa_wichuraiana	Rw6G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	1 cut(s)	378
AciI	CCGC	2 cut(s)	437, 899
AclI	AACGTT	1 cut(s)	789
AclWI	GGATC	2 cut(s)	21, 94
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	4 cut(s)	273, 388, 606, 722
AcyI	GRCGYC	1 cut(s)	425
AfaI	GTAC	4 cut(s)	117, 371, 536, 555
AfeI	AGCGCT	1 cut(s)	501
AfiI	CCNNNNNNNGG	3 cut(s)	127, 803, 1041
AflIII	ACRYGT	1 cut(s)	450
AgsI	TTSAA	4 cut(s)	421, 618, 634, 862
AleI	CACNNNNGTG	1 cut(s)	649
AluBI	AGCT	5 cut(s)	8, 62, 248, 590, 946
AluI	AGCT	5 cut(s)	8, 62, 248, 590, 946
Alw21I	GWGCWC	1 cut(s)	876
Alw26I	GTCTC	1 cut(s)	441
AlwI	GGATC	2 cut(s)	21, 94
Ama87I	CYCGRG	4 cut(s)	209, 507, 557, 674
Aor51HI	AGCGCT	1 cut(s)	501
AoxI	GGCC	3 cut(s)	193, 595, 959
ApeKI	GCWGC	4 cut(s)	248, 343, 502, 733
ApoI	RAATTY	1 cut(s)	44
ArsI	GACNNNNNNTTYG	4 cut(s)	51, 63, 83, 95
AspA2I	CCTAGG	1 cut(s)	622
AspLEI	GCGC	1 cut(s)	502
AspS9I	GGNCC	1 cut(s)	959
AsuHPI	GGTGA	1 cut(s)	49
AvaI	CYCGRG	4 cut(s)	209, 507, 557, 674
AvrII	CCTAGG	1 cut(s)	622
BaeGI	GKGCMC	1 cut(s)	328
BanII	GRGCYC	3 cut(s)	209, 681, 906
BauI	CACGAG	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	876
BbvI	GCAGC	4 cut(s)	235, 355, 489, 720
BccI	CCATC	2 cut(s)	28, 1052
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	441
BfaI	CTAG	3 cut(s)	476, 623, 846
BfmI	CTRYAG	3 cut(s)	125, 800, 933
BfoI	RGCGCY	1 cut(s)	503
BglII	AGATCT	1 cut(s)	970
BisI	GCNGC	4 cut(s)	249, 344, 503, 734
BlnI	CCTAGG	1 cut(s)	622
BlsI	GCNGC	4 cut(s)	250, 345, 504, 735
BmeT110I	CYCGRG	4 cut(s)	209, 507, 557, 674
BmgT120I	GGNCC	1 cut(s)	959
BmiI	GGNNCC	1 cut(s)	903
BmrI	ACTGGG	1 cut(s)	659
BmsI	GCATC	1 cut(s)	825
BmuI	ACTGGG	1 cut(s)	659
BplI	GAGNNNNNCTC	2 cut(s)	554, 586
BpmI	CTGGAG	2 cut(s)	108, 417
Bpu10I	CCTNAGC	1 cut(s)	599
Bsa29I	ATCGAT	1 cut(s)	156
BsaBI	GATNNNNATC	4 cut(s)	156, 162, 839, 987
BsaHI	GRCGYC	1 cut(s)	425
BsaJI	CCNNGG	3 cut(s)	283, 357, 622
BsaXI	ACNNNNNCTCC	2 cut(s)	798, 828
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 803, 1041
Bse1I	ACTGG	2 cut(s)	469, 665
Bse3DI	GCAATG	2 cut(s)	415, 856
Bse8I	GATNNNNATC	4 cut(s)	156, 162, 839, 987
BseCI	ATCGAT	1 cut(s)	156
BseDI	CCNNGG	3 cut(s)	283, 357, 622
BseGI	GGATG	1 cut(s)	714
BseJI	GATNNNNATC	4 cut(s)	156, 162, 839, 987
BseLI	CCNNNNNNNGG	3 cut(s)	127, 803, 1041
BseMI	GCAATG	2 cut(s)	415, 856
BseMII	CTCAG	1 cut(s)	18
BseNI	ACTGG	2 cut(s)	469, 665
BseRI	GAGGAG	1 cut(s)	323
BseSI	GKGCMC	1 cut(s)	328
BseXI	GCAGC	4 cut(s)	235, 355, 489, 720
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	3 cut(s)	195, 597, 961
BshVI	ATCGAT	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	876
BsiHKCI	CYCGRG	4 cut(s)	209, 507, 557, 674
BslFI	GGGAC	1 cut(s)	1065
BslI	CCNNNNNNNGG	3 cut(s)	127, 803, 1041
BsmAI	GTCTC	1 cut(s)	441
BsmFI	GGGAC	1 cut(s)	1065
BsnI	GGCC	3 cut(s)	195, 597, 961
BsoBI	CYCGRG	4 cut(s)	209, 507, 557, 674
Bsp1286I	GDGCHC	5 cut(s)	209, 328, 681, 876, 906
Bsp143I	GATC	8 cut(s)	13, 99, 157, 163, 184, 199, 840, 970
Bsp19I	CCATGG	1 cut(s)	283
BspACI	CCGC	2 cut(s)	437, 899
BspANI	GGCC	3 cut(s)	195, 597, 961
BspCNI	CTCAG	1 cut(s)	19
BspDI	ATCGAT	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	378
BspHI	TCATGA	2 cut(s)	160, 1089
BspLI	GGNNCC	1 cut(s)	903
BspMAI	CTGCAG	2 cut(s)	804, 937
BspPI	GGATC	2 cut(s)	21, 94
BsrDI	GCAATG	2 cut(s)	415, 856
BsrI	ACTGG	2 cut(s)	469, 665
BssECI	CCNNGG	3 cut(s)	283, 357, 622
BssMI	GATC	8 cut(s)	13, 99, 157, 163, 184, 199, 840, 970
BssNI	GRCGYC	1 cut(s)	425
BssSI	CACGAG	1 cut(s)	338
BssT1I	CCWWGG	3 cut(s)	283, 357, 622
Bst2BI	CACGAG	1 cut(s)	338
Bst4CI	ACNGT	3 cut(s)	539, 553, 746
BstACI	GRCGYC	1 cut(s)	425
BstDEI	CTNAG	2 cut(s)	27, 599
BstDSI	CCRYGG	1 cut(s)	283
BstENI	CCTNNNNNAGG	1 cut(s)	1039
BstF5I	GGATG	1 cut(s)	714
BstFNI	CGCG	1 cut(s)	378
BstH2I	RGCGCY	1 cut(s)	503
BstHHI	GCGC	1 cut(s)	502
BstKTI	GATC	8 cut(s)	16, 102, 160, 166, 187, 202, 843, 973
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	8 cut(s)	13, 99, 157, 163, 184, 199, 840, 970
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNSI	RCATGY	1 cut(s)	924
BstSFI	CTRYAG	3 cut(s)	125, 800, 933
BstSLI	GKGCMC	1 cut(s)	328
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	4 cut(s)	235, 355, 489, 720
BstX2I	RGATCY	2 cut(s)	99, 970
BstXI	CCANNNNNNTGG	1 cut(s)	441
BstYI	RGATCY	2 cut(s)	99, 970
Bsu15I	ATCGAT	1 cut(s)	156
BsuRI	GGCC	3 cut(s)	195, 597, 961
BsuTUI	ATCGAT	1 cut(s)	156
BtgI	CCRYGG	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	714
BtsI	GCAGTG	3 cut(s)	610, 797, 930
BtsIMutI	CAGTG	3 cut(s)	610, 797, 930
CciI	TCATGA	2 cut(s)	160, 1089
CfoI	GCGC	1 cut(s)	502
Cfr13I	GGNCC	1 cut(s)	959
ClaI	ATCGAT	1 cut(s)	156
CseI	GACGC	2 cut(s)	339, 414
Csp6I	GTAC	4 cut(s)	116, 370, 535, 554
CviAII	CATG	7 cut(s)	148, 161, 284, 350, 832, 921, 1090
CviQI	GTAC	4 cut(s)	116, 370, 535, 554
DdeI	CTNAG	2 cut(s)	27, 599
DpnI	GATC	8 cut(s)	15, 101, 159, 165, 186, 201, 842, 972
DpnII	GATC	8 cut(s)	13, 99, 157, 163, 184, 199, 840, 970
Eco130I	CCWWGG	3 cut(s)	283, 357, 622
Eco147I	AGGCCT	2 cut(s)	195, 597
Eco24I	GRGCYC	3 cut(s)	209, 681, 906
Eco32I	GATATC	1 cut(s)	154
Eco47III	AGCGCT	1 cut(s)	501
Eco57I	CTGAAG	4 cut(s)	273, 388, 606, 722
Eco88I	CYCGRG	4 cut(s)	209, 507, 557, 674
EcoNI	CCTNNNNNAGG	1 cut(s)	1039
EcoRV	GATATC	1 cut(s)	154
EcoT14I	CCWWGG	3 cut(s)	283, 357, 622
EcoT38I	GRGCYC	3 cut(s)	209, 681, 906
ErhI	CCWWGG	3 cut(s)	283, 357, 622
FaeI	CATG	7 cut(s)	151, 164, 287, 353, 835, 924, 1093
FaqI	GGGAC	1 cut(s)	1065
FatI	CATG	7 cut(s)	147, 160, 283, 349, 831, 920, 1089
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	4 cut(s)	249, 344, 503, 734
FokI	GGATG	1 cut(s)	701
FriOI	GRGCYC	3 cut(s)	209, 681, 906
Fsp4HI	GCNGC	4 cut(s)	249, 344, 503, 734
FspBI	CTAG	3 cut(s)	476, 623, 846
GlaI	GCGC	1 cut(s)	501
GluI	GCNGC	4 cut(s)	249, 344, 503, 734
GsuI	CTGGAG	2 cut(s)	108, 417
HaeII	RGCGCY	1 cut(s)	503
HaeIII	GGCC	3 cut(s)	195, 597, 961
HgaI	GACGC	2 cut(s)	339, 414
HhaI	GCGC	1 cut(s)	502
Hin1I	GRCGYC	1 cut(s)	425
Hin1II	CATG	7 cut(s)	151, 164, 287, 353, 835, 924, 1093
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HincII	GTYRAC	2 cut(s)	82, 787
HindII	GTYRAC	2 cut(s)	82, 787
HindIII	AAGCTT	1 cut(s)	588
HinfI	GANTC	3 cut(s)	83, 108, 1086
HpaI	GTTAAC	1 cut(s)	787
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	6 cut(s)	82, 118, 280, 397, 429, 787
Hpy188I	TCNGA	8 cut(s)	170, 204, 237, 273, 574, 586, 712, 982
Hpy188III	TCNNGA	6 cut(s)	87, 161, 338, 740, 862, 1090
Hpy8I	GTNNAC	6 cut(s)	82, 118, 280, 397, 429, 787
Hpy99I	CGWCG	1 cut(s)	333
HpyAV	CCTTC	2 cut(s)	415, 1042
HpyCH4III	ACNGT	3 cut(s)	539, 553, 746
HpyCH4IV	ACGT	2 cut(s)	452, 789
HpyCH4V	TGCA	9 cut(s)	136, 462, 516, 698, 802, 838, 920, 935, 1070
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	2 cut(s)	27, 599
HpySE526I	ACGT	2 cut(s)	452, 789
Hsp92I	GRCGYC	1 cut(s)	425
Hsp92II	CATG	7 cut(s)	151, 164, 287, 353, 835, 924, 1093
HspAI	GCGC	1 cut(s)	500
Ksp22I	TGATCA	1 cut(s)	199
KspAI	GTTAAC	1 cut(s)	787
Kzo9I	GATC	8 cut(s)	13, 99, 157, 163, 184, 199, 840, 970
LmnI	GCTCC	2 cut(s)	871, 901
LpnPI	CCDG	9 cut(s)	48, 72, 113, 447, 472, 482, 678, 725, 788
Lsp1109I	GCAGC	4 cut(s)	235, 355, 489, 720
LweI	GCATC	1 cut(s)	825
MaeI	CTAG	3 cut(s)	476, 623, 846
MaeII	ACGT	2 cut(s)	452, 789
MaeIII	GTNAC	2 cut(s)	91, 605
MalI	GATC	8 cut(s)	15, 101, 159, 165, 186, 201, 842, 972
MboI	GATC	8 cut(s)	13, 99, 157, 163, 184, 199, 840, 970
MboII	GAAGA	4 cut(s)	43, 103, 491, 919
MflI	RGATCY	2 cut(s)	99, 970
MhlI	GDGCHC	5 cut(s)	209, 328, 681, 876, 906
MluCI	AATT	6 cut(s)	44, 75, 525, 575, 996, 1071
MlyI	GAGTC	2 cut(s)	77, 1080
MnlI	CCTC	9 cut(s)	16, 132, 207, 301, 304, 516, 804, 931, 1086
MseI	TTAA	1 cut(s)	786
MslI	CAYNNNNRTG	2 cut(s)	649, 774
MspA1I	CMGCKG	1 cut(s)	437
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	1 cut(s)	254
NcoI	CCATGG	1 cut(s)	283
NdeII	GATC	8 cut(s)	13, 99, 157, 163, 184, 199, 840, 970
NlaIII	CATG	7 cut(s)	151, 164, 287, 353, 835, 924, 1093
NlaIV	GGNNCC	1 cut(s)	903
NmuCI	GTSAC	2 cut(s)	91, 605
NspI	RCATGY	1 cut(s)	924
OliI	CACNNNNGTG	1 cut(s)	649
PaeR7I	CTCGAG	1 cut(s)	507
PagI	TCATGA	2 cut(s)	160, 1089
PceI	AGGCCT	2 cut(s)	195, 597
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	4 cut(s)	250, 345, 504, 735
PleI	GAGTC	2 cut(s)	77, 1080
PpsI	GAGTC	2 cut(s)	77, 1080
Psp1406I	AACGTT	1 cut(s)	789
PspN4I	GGNNCC	1 cut(s)	903
PspPI	GGNCC	1 cut(s)	959
PspXI	VCTCGAGB	1 cut(s)	507
PstI	CTGCAG	2 cut(s)	804, 937
PsuI	RGATCY	2 cut(s)	99, 970
RsaI	GTAC	4 cut(s)	117, 371, 536, 555
RsaNI	GTAC	4 cut(s)	116, 370, 535, 554
RseI	CAYNNNNRTG	2 cut(s)	649, 774
SalI	GTCGAC	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	786
SatI	GCNGC	4 cut(s)	249, 344, 503, 734
Sau3AI	GATC	8 cut(s)	13, 99, 157, 163, 184, 199, 840, 970
Sau96I	GGNCC	1 cut(s)	959
SchI	GAGTC	2 cut(s)	77, 1080
SduI	GDGCHC	5 cut(s)	209, 328, 681, 876, 906
SfaNI	GCATC	1 cut(s)	825
SfcI	CTRYAG	3 cut(s)	125, 800, 933
Sfr274I	CTCGAG	1 cut(s)	507
SlaI	CTCGAG	1 cut(s)	507
SmiMI	CAYNNNNRTG	2 cut(s)	649, 774
SmlI	CTYRAG	1 cut(s)	507
SmoI	CTYRAG	1 cut(s)	507
Sse9I	AATT	6 cut(s)	44, 75, 525, 575, 996, 1071
SseBI	AGGCCT	2 cut(s)	195, 597
SsiI	CCGC	2 cut(s)	437, 899
SspI	AATATT	1 cut(s)	823
SspMI	CTAG	3 cut(s)	476, 623, 846
StuI	AGGCCT	2 cut(s)	195, 597
StyI	CCWWGG	3 cut(s)	283, 357, 622
TaaI	ACNGT	3 cut(s)	539, 553, 746
TaiI	ACGT	2 cut(s)	455, 792
TaqI	TCGA	3 cut(s)	81, 156, 508
TasI	AATT	6 cut(s)	44, 75, 525, 575, 996, 1071
TatI	WGTACW	2 cut(s)	534, 553
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	1 cut(s)	786
Tru9I	TTAA	1 cut(s)	786
TscAI	CASTG	3 cut(s)	610, 804, 937
TseFI	GTSAC	2 cut(s)	91, 605
TseI	GCWGC	4 cut(s)	248, 343, 502, 733
Tsp45I	GTSAC	2 cut(s)	91, 605
TspDTI	ATGAA	3 cut(s)	366, 498, 758
TspRI	CASTG	3 cut(s)	610, 804, 937
XagI	CCTNNNNNAGG	1 cut(s)	1039
XapI	RAATTY	1 cut(s)	44
XceI	RCATGY	1 cut(s)	924
XhoI	CTCGAG	1 cut(s)	507
XmaJI	CCTAGG	1 cut(s)	622
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	3 cut(s)	476, 623, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.