Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005170

Physical Location & Seq

Genomic Coordinates Reverse (-)

18087654 .. 18089106

Gene Structure 1453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g21890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGAAGCTGTGGATCATTTTGAGGCTGAGAAGAAGGTGCAAGAATTTGACGAAACCAAAGCTGGTGCCAAAGGACTTGTCGACTCTGGAGTGACCAAGATCCCAAGACTGTTCGTACACCCTCCAGATCTATTGCAACAAAACAACAACGATCGTCATCTCGGAGTTCCAATTATTGATCTCAAAGGCATTGATCAGAGCACCGCGAGGCGTAAAGAAGTCATCAGTGAGATAAGCAAAGCAGCTGAGGCATGGGGATTCTTCCAGATAGTGAACCATGGAGTTCCATATGATGTTATCGAGGAGGTGCTGAAAAGTGTTCGACGATTTCACGAGCAGCCCCGTGAAGCCAAGGCCGAGTGGTACTCGCGCGATTTCAAGAACAAGGCATTCAACAACTTCTGCAACGCAGATTTGAAAGTGTCGACTCCAGCTGGTTGGAGGGACACTATCTCCTGGCAGCTGCCGCAGTTCCGAGCAGATGAAAGTAACTCTCAAGCACTGCCTGATGTCTGCAGAAGGGAATTTGTCGAGTACAGTAGACACATGACTCTGTTGAAAGAGAAGCTCTCCATTTTGTTGTCCGAAGCTTTAGGTCTGAGCAAGGACTACCTTTCAAGCCTAGGGTGCTTTAAATCGGCAACACTGATTGGTCACTATTACCCGGTTTGCCCAGAGCCCCATCTAACTTTAGGTACAAGCAAGCACTCGGACCTCTCCTTTCTCACTCTGCTCCTTCAAGACGGTGTCGGTGGCCTCCAAGTGCTTCATCAAAATGTTTGGGTGGATGTGCCACCACTGCAAGGAGCTCTGGTAGCAAATCTTGGTGACTTGATGCAGATCACTAGTAATGACAAGTTCAAGAGTGTAGAGCACAGAGTTTTGGCAACCAGCACCGCGGTGCCTCGGACATCAGTCGCGTGTTTTTTCAATGTCGACGACAAGCTCAAACCGTATGGCCCGATCAAGGAGCTTCTTTCCGAAACCAATCCCGCAATTTACAGAGACAATATCAGTTTTGGAGAATACCTAAAGTATTATAGGCTCAAGGGGCAAGATGGAAACTCTTCTCTACCTCATTTTAGACTCGTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

366

Amino Acids

41.21

Weight (kDa)

6.51

Isoelectric Point (pI)

30.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	56 - 156	2e-19	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	215 - 311	4.1e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005170)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03211 FvH4_2g21890
malus_domestica	MD05G1014100.v1.1
prunus_persica	Prupe.8G226600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0392041 RchiOBHm_Chr6g0288791
rosa_laevigata	RLG00000009843 RLG00000012366 RLG00000012368 RLG00000012372 RLG00000012377 RLG00000012378 RLG00000012380
rosa_multiflora	Rmu_co8406507.1_g000001 Rmu_sc0004928.1_g000001 Rmu_sc0005091.1_g000008 Rmu_sc0005314.1_g000026
rosa_roxburghii	Rroxscaffold_7G00179880 Rroxscaffold_7G00179900
rosa_rugosa	Rorug04G0006500 Rorug06G0198100 Rorug06G0198200 Rorug06G0198300
rosa_samantha	Rh4CG043100 Rh6AG045200 Rh6BG315200 Rh6BG315400 Rh6CG322900 Rh6DG308600
rosa_wichuraiana	Rw6G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	65, 901
AccI	GTMKAC	4 cut(s)	81, 425, 541, 936
AccII	CGCG	5 cut(s)	206, 370, 372, 899, 920
AciI	CCGC	5 cut(s)	204, 467, 897, 899, 993
AclWI	GGATC	2 cut(s)	21, 94
AcsI	RAATTY	2 cut(s)	44, 524
AfaI	GTAC	4 cut(s)	117, 365, 536, 697
AfiI	CCNNNNNNNGG	2 cut(s)	803, 967
AgsI	TTSAA	8 cut(s)	379, 394, 418, 559, 618, 740, 862, 931
AhlI	ACTAGT	1 cut(s)	845
AjnI	CCWGG	1 cut(s)	455
AleI	CACNNNNGTG	1 cut(s)	899
Alw21I	GWGCWC	3 cut(s)	203, 811, 876
Alw26I	GTCTC	1 cut(s)	999
AlwI	GGATC	2 cut(s)	21, 94
AoxI	GGCC	3 cut(s)	354, 754, 958
ApeKI	GCWGC	4 cut(s)	242, 337, 460, 463
ApoI	RAATTY	2 cut(s)	44, 524
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
Asp700I	GAANNNNTTC	1 cut(s)	1066
AspA2I	CCTAGG	1 cut(s)	622
AspLEI	GCGC	1 cut(s)	372
AspS9I	GGNCC	2 cut(s)	712, 959
AsuC2I	CCSGG	1 cut(s)	665
AsuHPI	GGTGA	1 cut(s)	839
AvaII	GGWCC	1 cut(s)	712
AvrII	CCTAGG	1 cut(s)	622
BanI	GGYRCC	2 cut(s)	65, 901
BanII	GRGCYC	2 cut(s)	681, 811
BauI	CACGAG	2 cut(s)	332, 1088
Bbv12I	GWGCWC	3 cut(s)	203, 811, 876
BbvCI	CCTCAGC	1 cut(s)	246
BbvI	GCAGC	4 cut(s)	254, 349, 450, 472
BccI	CCATC	2 cut(s)	690, 1052
BciT130I	CCWGG	1 cut(s)	457
BclI	TGATCA	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	665
BcoDI	GTCTC	1 cut(s)	999
BcuI	ACTAGT	1 cut(s)	845
BfaI	CTAG	2 cut(s)	623, 846
BfmI	CTRYAG	1 cut(s)	514
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	5 cut(s)	243, 338, 461, 464, 467
BlnI	CCTAGG	1 cut(s)	622
BlsI	GCNGC	5 cut(s)	244, 339, 462, 465, 468
Bme1390I	CCNGG	2 cut(s)	457, 665
Bme18I	GGWCC	1 cut(s)	712
BmgT120I	GGNCC	2 cut(s)	712, 959
BmiI	GGNNCC	2 cut(s)	67, 903
BmrFI	CCNGG	2 cut(s)	457, 665
BmsI	GCATC	1 cut(s)	825
BoxI	GACNNNNGTC	1 cut(s)	914
BplI	GAGNNNNNCTC	4 cut(s)	350, 382, 554, 586
BpmI	CTGGAG	3 cut(s)	108, 108, 414
Bpu10I	CCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	2 cut(s)	480, 1031
BpuMI	CCSGG	1 cut(s)	665
BsaBI	GATNNNNATC	2 cut(s)	156, 839
BsaJI	CCNNGG	5 cut(s)	277, 351, 622, 897, 905
BsaXI	ACNNNNNCTCC	4 cut(s)	437, 467, 798, 828
Bsc4I	CCNNNNNNNGG	2 cut(s)	803, 967
Bse8I	GATNNNNATC	2 cut(s)	156, 839
BseBI	CCWGG	1 cut(s)	457
BseDI	CCNNGG	5 cut(s)	277, 351, 622, 897, 905
BseGI	GGATG	1 cut(s)	793
BseJI	GATNNNNATC	2 cut(s)	156, 839
BseLI	CCNNNNNNNGG	2 cut(s)	803, 967
BseMII	CTCAG	3 cut(s)	18, 237, 590
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	4 cut(s)	254, 349, 450, 472
Bsh1236I	CGCG	5 cut(s)	206, 370, 372, 899, 920
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	3 cut(s)	356, 756, 960
BshNI	GGYRCC	2 cut(s)	65, 901
BsiEI	CGRYCG	1 cut(s)	154
BsiHKAI	GWGCWC	3 cut(s)	203, 811, 876
BsiSI	CCGG	1 cut(s)	665
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	2 cut(s)	803, 967
BsmAI	GTCTC	1 cut(s)	999
BsmFI	GGGAC	1 cut(s)	458
BsmI	GAATGC	1 cut(s)	389
BsnI	GGCC	3 cut(s)	356, 756, 960
Bsp1286I	GDGCHC	4 cut(s)	203, 681, 811, 876
Bsp143I	GATC	8 cut(s)	13, 99, 127, 151, 178, 193, 840, 963
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	5 cut(s)	204, 467, 897, 899, 993
BspANI	GGCC	3 cut(s)	356, 756, 960
BspCNI	CTCAG	3 cut(s)	19, 238, 591
BspFNI	CGCG	5 cut(s)	206, 370, 372, 899, 920
BspLI	GGNNCC	2 cut(s)	67, 903
BspMAI	CTGCAG	1 cut(s)	518
BspPI	GGATC	2 cut(s)	21, 94
BspT107I	GGYRCC	2 cut(s)	65, 901
BssECI	CCNNGG	5 cut(s)	277, 351, 622, 897, 905
BssMI	GATC	8 cut(s)	13, 99, 127, 151, 178, 193, 840, 963
BssSI	CACGAG	2 cut(s)	332, 1088
BssT1I	CCWWGG	3 cut(s)	277, 351, 622
Bst2BI	CACGAG	2 cut(s)	332, 1088
Bst2UI	CCWGG	1 cut(s)	457
Bst4CI	ACNGT	4 cut(s)	111, 539, 746, 954
Bst6I	CTCTTC	1 cut(s)	1072
BstC8I	GCNNGC	1 cut(s)	704
BstDEI	CTNAG	3 cut(s)	27, 246, 599
BstDSI	CCRYGG	2 cut(s)	277, 897
BstF5I	GGATG	1 cut(s)	793
BstFNI	CGCG	5 cut(s)	206, 370, 372, 899, 920
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	8 cut(s)	16, 102, 130, 154, 181, 196, 843, 966
BstMAI	GTCTC	1 cut(s)	999
BstMBI	GATC	8 cut(s)	13, 99, 127, 151, 178, 193, 840, 963
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	6 cut(s)	248, 466, 627, 799, 815, 1051
BstNI	CCWGG	1 cut(s)	457
BstPAI	GACNNNNGTC	1 cut(s)	914
BstSCI	CCNGG	2 cut(s)	455, 663
BstSFI	CTRYAG	1 cut(s)	514
BstUI	CGCG	5 cut(s)	206, 370, 372, 899, 920
BstV1I	GCAGC	4 cut(s)	254, 349, 450, 472
BstX2I	RGATCY	2 cut(s)	99, 127
BstXI	CCANNNNNNTGG	1 cut(s)	438
BstYI	RGATCY	2 cut(s)	99, 127
BsuRI	GGCC	3 cut(s)	356, 756, 960
BtgI	CCRYGG	2 cut(s)	277, 897
BtsCI	GGATG	1 cut(s)	793
BtsI	GCAGTG	2 cut(s)	500, 797
BtsIMutI	CAGTG	4 cut(s)	232, 500, 644, 797
Cac8I	GCNNGC	1 cut(s)	704
CfoI	GCGC	1 cut(s)	372
Cfr13I	GGNCC	2 cut(s)	712, 959
Cfr42I	CCGCGG	1 cut(s)	900
Csp6I	GTAC	4 cut(s)	116, 364, 535, 696
CviAII	CATG	3 cut(s)	252, 278, 547
CviQI	GTAC	4 cut(s)	116, 364, 535, 696
DdeI	CTNAG	3 cut(s)	27, 246, 599
DpnI	GATC	8 cut(s)	15, 101, 129, 153, 180, 195, 842, 965
DpnII	GATC	8 cut(s)	13, 99, 127, 151, 178, 193, 840, 963
DraI	TTTAAA	1 cut(s)	634
Eam1104I	CTCTTC	1 cut(s)	1072
EarI	CTCTTC	1 cut(s)	1072
Ecl136II	GAGCTC	1 cut(s)	809
Eco130I	CCWWGG	3 cut(s)	277, 351, 622
Eco24I	GRGCYC	2 cut(s)	681, 811
Eco47I	GGWCC	1 cut(s)	712
Eco53kI	GAGCTC	1 cut(s)	809
EcoICRI	GAGCTC	1 cut(s)	809
EcoRII	CCWGG	1 cut(s)	455
EcoT14I	CCWWGG	3 cut(s)	277, 351, 622
EcoT38I	GRGCYC	2 cut(s)	681, 811
ErhI	CCWWGG	3 cut(s)	277, 351, 622
FaeI	CATG	3 cut(s)	255, 281, 550
FaiI	YATR	7 cut(s)	253, 279, 289, 291, 548, 957, 1041
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	3 cut(s)	251, 277, 546
FauI	CCCGC	1 cut(s)	1000
FauNDI	CATATG	1 cut(s)	289
FbaI	TGATCA	1 cut(s)	193
FblI	GTMKAC	4 cut(s)	81, 425, 541, 936
Fnu4HI	GCNGC	5 cut(s)	243, 338, 461, 464, 467
FokI	GGATG	1 cut(s)	800
FriOI	GRGCYC	2 cut(s)	681, 811
Fsp4HI	GCNGC	5 cut(s)	243, 338, 461, 464, 467
FspBI	CTAG	2 cut(s)	623, 846
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	5 cut(s)	243, 338, 461, 464, 467
GsuI	CTGGAG	3 cut(s)	108, 108, 414
HaeIII	GGCC	3 cut(s)	356, 756, 960
HapII	CCGG	1 cut(s)	665
HhaI	GCGC	1 cut(s)	372
Hin1II	CATG	3 cut(s)	255, 281, 550
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HincII	GTYRAC	3 cut(s)	82, 426, 937
HindII	GTYRAC	3 cut(s)	82, 426, 937
HindIII	AAGCTT	1 cut(s)	588
HinfI	GANTC	5 cut(s)	83, 258, 427, 550, 1086
HpaII	CCGG	1 cut(s)	665
HphI	GGTGA	1 cut(s)	839
Hpy166II	GTNNAC	6 cut(s)	82, 118, 274, 426, 542, 937
Hpy188I	TCNGA	8 cut(s)	164, 198, 476, 586, 600, 712, 909, 982
Hpy188III	TCNNGA	7 cut(s)	87, 125, 265, 332, 379, 740, 862
Hpy8I	GTNNAC	6 cut(s)	82, 118, 274, 426, 542, 937
Hpy99I	CGWCG	2 cut(s)	327, 941
HpyAV	CCTTC	3 cut(s)	28, 513, 746
HpyCH4III	ACNGT	4 cut(s)	111, 539, 746, 954
HpyCH4V	TGCA	7 cut(s)	40, 136, 405, 516, 802, 838, 1093
HpyF10VI	GCNNNNNNNGC	6 cut(s)	248, 466, 627, 799, 815, 1051
HpyF3I	CTNAG	3 cut(s)	27, 246, 599
Hsp92II	CATG	3 cut(s)	255, 281, 550
HspAI	GCGC	1 cut(s)	370
Ksp22I	TGATCA	1 cut(s)	193
KspI	CCGCGG	1 cut(s)	900
Kzo9I	GATC	8 cut(s)	13, 99, 127, 151, 178, 193, 840, 963
LmnI	GCTCC	3 cut(s)	738, 806, 970
Lsp1109I	GCAGC	4 cut(s)	254, 349, 450, 472
LweI	GCATC	1 cut(s)	825
MaeI	CTAG	2 cut(s)	623, 846
MaeIII	GTNAC	4 cut(s)	91, 488, 653, 827
MalI	GATC	8 cut(s)	15, 101, 129, 153, 180, 195, 842, 965
MboI	GATC	8 cut(s)	13, 99, 127, 151, 178, 193, 840, 963
MboII	GAAGA	3 cut(s)	43, 253, 1059
MflI	RGATCY	2 cut(s)	99, 127
MhlI	GDGCHC	4 cut(s)	203, 681, 811, 876
MluCI	AATT	4 cut(s)	44, 171, 524, 996
MlyI	GAGTC	4 cut(s)	77, 421, 544, 1080
MmeI	TCCRAC	1 cut(s)	419
MroXI	GAANNNNTTC	1 cut(s)	1066
MseI	TTAA	1 cut(s)	633
MslI	CAYNNNNRTG	2 cut(s)	774, 899
MspA1I	CMGCKG	4 cut(s)	245, 434, 463, 899
MspI	CCGG	1 cut(s)	665
MspR9I	CCNGG	2 cut(s)	457, 665
Mva1269I	GAATGC	1 cut(s)	389
MvaI	CCWGG	1 cut(s)	457
MvnI	CGCG	5 cut(s)	206, 370, 372, 899, 920
MwoI	GCNNNNNNNGC	6 cut(s)	248, 466, 627, 799, 815, 1051
NciI	CCSGG	1 cut(s)	665
NcoI	CCATGG	1 cut(s)	277
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	8 cut(s)	13, 99, 127, 151, 178, 193, 840, 963
NlaIII	CATG	3 cut(s)	255, 281, 550
NlaIV	GGNNCC	2 cut(s)	67, 903
NmeAIII	GCCGAG	1 cut(s)	382
NmuCI	GTSAC	3 cut(s)	91, 653, 827
OliI	CACNNNNGTG	1 cut(s)	899
PctI	GAATGC	1 cut(s)	389
PdmI	GAANNNNTTC	1 cut(s)	1066
PfeI	GAWTC	1 cut(s)	258
PflFI	GACNNNGTC	1 cut(s)	746
PkrI	GCNGC	5 cut(s)	244, 339, 462, 465, 468
Ple19I	CGATCG	1 cut(s)	154
PleI	GAGTC	4 cut(s)	77, 421, 544, 1080
PpsI	GAGTC	4 cut(s)	77, 421, 544, 1080
PshAI	GACNNNNGTC	1 cut(s)	914
Psp124BI	GAGCTC	1 cut(s)	811
Psp6I	CCWGG	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	455
PspN4I	GGNNCC	2 cut(s)	67, 903
PspPI	GGNCC	2 cut(s)	712, 959
PstI	CTGCAG	1 cut(s)	518
PsuI	RGATCY	2 cut(s)	99, 127
PsyI	GACNNNGTC	1 cut(s)	746
PvuI	CGATCG	1 cut(s)	154
PvuII	CAGCTG	3 cut(s)	245, 434, 463
RsaI	GTAC	4 cut(s)	117, 365, 536, 697
RsaNI	GTAC	4 cut(s)	116, 364, 535, 696
RseI	CAYNNNNRTG	2 cut(s)	774, 899
SacI	GAGCTC	1 cut(s)	811
SacII	CCGCGG	1 cut(s)	900
SalI	GTCGAC	3 cut(s)	80, 424, 935
SaqAI	TTAA	1 cut(s)	633
SatI	GCNGC	5 cut(s)	243, 338, 461, 464, 467
Sau3AI	GATC	8 cut(s)	13, 99, 127, 151, 178, 193, 840, 963
Sau96I	GGNCC	2 cut(s)	712, 959
SchI	GAGTC	4 cut(s)	77, 421, 544, 1080
ScrFI	CCNGG	2 cut(s)	457, 665
SduI	GDGCHC	4 cut(s)	203, 681, 811, 876
SfaNI	GCATC	1 cut(s)	825
SfcI	CTRYAG	1 cut(s)	514
Sfr303I	CCGCGG	1 cut(s)	900
SgrBI	CCGCGG	1 cut(s)	900
SinI	GGWCC	1 cut(s)	712
SmiMI	CAYNNNNRTG	2 cut(s)	774, 899
SmlI	CTYRAG	2 cut(s)	495, 1046
SmoI	CTYRAG	2 cut(s)	495, 1046
SpeI	ACTAGT	1 cut(s)	845
Sse9I	AATT	4 cut(s)	44, 171, 524, 996
SsiI	CCGC	5 cut(s)	204, 467, 897, 899, 993
SspMI	CTAG	2 cut(s)	623, 846
SstI	GAGCTC	1 cut(s)	811
StyD4I	CCNGG	2 cut(s)	455, 663
StyI	CCWWGG	3 cut(s)	277, 351, 622
TaaI	ACNGT	4 cut(s)	111, 539, 746, 954
TaqI	TCGA	6 cut(s)	81, 300, 322, 425, 531, 936
TasI	AATT	4 cut(s)	44, 171, 524, 996
TatI	WGTACW	1 cut(s)	534
TauI	GCSGC	1 cut(s)	469
TfiI	GAWTC	1 cut(s)	258
Tru1I	TTAA	1 cut(s)	633
Tru9I	TTAA	1 cut(s)	633
TscAI	CASTG	4 cut(s)	232, 507, 651, 804
TseFI	GTSAC	3 cut(s)	91, 653, 827
TseI	GCWGC	4 cut(s)	242, 337, 460, 463
Tsp45I	GTSAC	3 cut(s)	91, 653, 827
TspDTI	ATGAA	2 cut(s)	498, 758
TspRI	CASTG	4 cut(s)	232, 507, 651, 804
Tth111I	GACNNNGTC	1 cut(s)	746
VpaK11BI	GGWCC	1 cut(s)	712
XapI	RAATTY	2 cut(s)	44, 524
XmaJI	CCTAGG	1 cut(s)	622
XmiI	GTMKAC	4 cut(s)	81, 425, 541, 936
XmnI	GAANNNNTTC	1 cut(s)	1066
XspI	CTAG	2 cut(s)	623, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.