Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005170

Physical Location & Seq

Genomic Coordinates Reverse (-)

20308577 .. 20309341

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G226600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGACAAGTTCAAGGGTATTTCTGCAGTCTGAATTACACATGTATTTGCAGTTGCTTAGTAATGACAAGTTCAAGAGTGTGGAGCACAGAGTACTGGCTACCCCACTTGGCAAGCCAAGAATATCAGTTGTATGTTTTTTCCTTCCTTGGGCTAAGAATCCCCCATATACTAGGATCACCTCTTATGAAAAGTTTATGAACCATTACAGTGTTGTTGCGCAAATTGGGGGCCATGCCTTGCCTCACTTTAAACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

86

Amino Acids

9.85

Weight (kDa)

9.84

Isoelectric Point (pI)

30.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005170)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03211 FvH4_2g21890
malus_domestica	MD05G1014100.v1.1
prunus_persica	Prupe.8G226600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0392041 RchiOBHm_Chr6g0288791
rosa_laevigata	RLG00000009843 RLG00000012366 RLG00000012368 RLG00000012372 RLG00000012377 RLG00000012378 RLG00000012380
rosa_multiflora	Rmu_co8406507.1_g000001 Rmu_sc0004928.1_g000001 Rmu_sc0005091.1_g000008 Rmu_sc0005314.1_g000026
rosa_roxburghii	Rroxscaffold_7G00179880 Rroxscaffold_7G00179900
rosa_rugosa	Rorug04G0006500 Rorug06G0198100 Rorug06G0198200 Rorug06G0198300
rosa_samantha	Rh4CG043100 Rh6AG045200 Rh6BG315200 Rh6BG315400 Rh6CG322900 Rh6DG308600
rosa_wichuraiana	Rw6G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	219
AclWI	GGATC	1 cut(s)	182
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	1 cut(s)	148
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	2 cut(s)	12, 73
Alw21I	GWGCWC	1 cut(s)	87
AlwI	GGATC	1 cut(s)	182
AoxI	GGCC	1 cut(s)	229
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	87
BfaI	CTAG	1 cut(s)	171
BfmI	CTRYAG	2 cut(s)	23, 254
BmcAI	AGTACT	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	146
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseNI	ACTGG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	148
BsnI	GGCC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	1 cut(s)	174
BspANI	GGCC	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	230
BspMAI	CTGCAG	1 cut(s)	27
BspPI	GGATC	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	146
Bst4CI	ACNGT	2 cut(s)	209, 255
BstC8I	GCNNGC	1 cut(s)	113
BstDEI	CTNAG	2 cut(s)	56, 153
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstNSI	RCATGY	1 cut(s)	43
BstSFI	CTRYAG	2 cut(s)	23, 254
BsuRI	GGCC	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	214
Cac8I	GCNNGC	1 cut(s)	113
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	2 cut(s)	40, 233
CviJI	RGCY	4 cut(s)	98, 115, 152, 231
CviKI_1	RGCY	4 cut(s)	98, 115, 152, 231
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	2 cut(s)	56, 153
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
DraI	TTTAAA	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	2 cut(s)	43, 236
FaiI	YATR	7 cut(s)	41, 133, 166, 168, 186, 197, 234
FatI	CATG	2 cut(s)	39, 232
FspBI	CTAG	1 cut(s)	171
FspI	TGCGCA	1 cut(s)	219
GlaI	GCGC	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	231
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	2 cut(s)	43, 236
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HinfI	GANTC	1 cut(s)	157
HphI	GGTGA	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	2 cut(s)	209, 255
HpyCH4V	TGCA	2 cut(s)	25, 49
HpyF3I	CTNAG	2 cut(s)	56, 153
Hsp92II	CATG	2 cut(s)	43, 236
HspAI	GCGC	1 cut(s)	218
Kzo9I	GATC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	1 cut(s)	80
MaeI	CTAG	1 cut(s)	171
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	2 cut(s)	32, 222
MnlI	CCTC	2 cut(s)	190, 252
MseI	TTAA	1 cut(s)	249
MslI	CAYNNNNRTG	1 cut(s)	207
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	2 cut(s)	43, 236
NlaIV	GGNNCC	1 cut(s)	230
NsbI	TGCGCA	1 cut(s)	219
NspI	RCATGY	1 cut(s)	43
PciI	ACATGT	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	157
PscI	ACATGT	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	230
PspPI	GGNCC	1 cut(s)	229
PstI	CTGCAG	1 cut(s)	27
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
RseI	CAYNNNNRTG	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	249
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	1 cut(s)	229
ScaI	AGTACT	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	1 cut(s)	182
SfcI	CTRYAG	2 cut(s)	23, 254
SmiMI	CAYNNNNRTG	1 cut(s)	207
Sse9I	AATT	2 cut(s)	32, 222
SspMI	CTAG	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	2 cut(s)	209, 255
TasI	AATT	2 cut(s)	32, 222
TatI	WGTACW	1 cut(s)	91
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	201, 212
TspRI	CASTG	1 cut(s)	214
XceI	RCATGY	1 cut(s)	43
XspI	CTAG	1 cut(s)	171
ZrmI	AGTACT	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.