RLG00000009843

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0005170
Physical Location & Seq
Reverse (-)
58821515 .. 58822539
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009843

Sequence Viewer

Length: 480 bp
ATGACTTTGCCTCAGACCAAGATGGTAGCAACCAACAGAAATGTGGTTCCAACAAACTATGACAGAACAAGTGAACTAGAAGCTTTTGATGACACAAAGGAAGGTGTTAAAGGTCTTGTTGATGCTGGCATAACTGAGATCCCTCAAATTTTTTATTATCCACCTGATGACTCCTCCATTAACAATACCTCTGATTCAGAGGAAGCTCGAGATCTTTTGAGGTTGCAGCTTATATCAAATGACAGATTCAAGAGTGTAGAGCACAGGGTACTGGCAAACCATAGAGGTCCTAGGGTATCAGTTGCAAGCTTTTTCAGCACAGGAATGCTGCCATCGACAAAGCTCTACGGACCAATCATGGAGTTATTATCAGAAGACAATCCTCCAAATTATAGGGAGACTACTGTTAGGGACTATGTTGCCTACTTCAATGAGAAAGGCCTTGATGGTACCTCTGCTTTGTCTCACTTTAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

160

Amino Acids

17.91

Weight (kDa)

5.05

Isoelectric Point (pI)

28.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 51 - 106 2.6e-06 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 449
AccB1I GGYRCC 1 cut(s) 449
AclWI GGATC 1 cut(s) 133
AcsI RAATTY 1 cut(s) 147
AfaI GTAC 2 cut(s) 270, 451
AgsI TTSAA 2 cut(s) 250, 430
AluBI AGCT 6 cut(s) 83, 206, 229, 309, 343, 475
AluI AGCT 6 cut(s) 83, 206, 229, 309, 343, 475
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 2 cut(s) 392, 468
AlwI GGATC 1 cut(s) 133
Ama87I CYCGRG 1 cut(s) 207
AoxI GGCC 1 cut(s) 439
ApeKI GCWGC 2 cut(s) 226, 328
ApoI RAATTY 1 cut(s) 147
Asp718I GGTACC 1 cut(s) 449
AspA2I CCTAGG 1 cut(s) 290
AspS9I GGNCC 2 cut(s) 287, 350
AvaI CYCGRG 1 cut(s) 207
AvaII GGWCC 2 cut(s) 287, 350
AvrII CCTAGG 1 cut(s) 290
BanI GGYRCC 1 cut(s) 449
BbsI GAAGAC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 238, 315
BccI CCATC 3 cut(s) 16, 340, 440
BcoDI GTCTC 2 cut(s) 392, 468
BfaI CTAG 2 cut(s) 77, 291
BglII AGATCT 1 cut(s) 211
BisI GCNGC 2 cut(s) 227, 329
BlnI CCTAGG 1 cut(s) 290
BlsI GCNGC 2 cut(s) 228, 330
Bme18I GGWCC 2 cut(s) 287, 350
BmeT110I CYCGRG 1 cut(s) 207
BmgT120I GGNCC 2 cut(s) 287, 350
BmiI GGNNCC 2 cut(s) 48, 451
BmsI GCATC 1 cut(s) 112
BpiI GAAGAC 1 cut(s) 381
BsaJI CCNNGG 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 290
BseMII CTCAG 2 cut(s) 26, 126
BseNI ACTGG 1 cut(s) 276
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 2 cut(s) 238, 315
BshFI GGCC 1 cut(s) 441
BshNI GGYRCC 1 cut(s) 449
BsiHKAI GWGCWC 1 cut(s) 264
BsiHKCI CYCGRG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 425
BsmAI GTCTC 2 cut(s) 392, 468
BsmFI GGGAC 1 cut(s) 425
BsmI GAATGC 1 cut(s) 330
BsnI GGCC 1 cut(s) 441
BsoBI CYCGRG 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 2 cut(s) 138, 211
BspANI GGCC 1 cut(s) 441
BspCNI CTCAG 2 cut(s) 25, 127
BspLI GGNNCC 2 cut(s) 48, 451
BspPI GGATC 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 449
BsrI ACTGG 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 290
BssMI GATC 2 cut(s) 138, 211
BssT1I CCWWGG 1 cut(s) 290
Bst4CI ACNGT 1 cut(s) 406
BstC8I GCNNGC 2 cut(s) 127, 307
BstDEI CTNAG 2 cut(s) 12, 135
BstKTI GATC 2 cut(s) 141, 214
BstMAI GTCTC 2 cut(s) 392, 468
BstMBI GATC 2 cut(s) 138, 211
BstMWI GCNNNNNNNGC 1 cut(s) 315
BstV1I GCAGC 2 cut(s) 238, 315
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 2 cut(s) 138, 211
BstYI RGATCY 2 cut(s) 138, 211
BsuRI GGCC 1 cut(s) 441
Cac8I GCNNGC 2 cut(s) 127, 307
Cfr13I GGNCC 2 cut(s) 287, 350
Csp6I GTAC 2 cut(s) 269, 450
CviAII CATG 1 cut(s) 358
CviJI RGCY 7 cut(s) 83, 206, 229, 309, 343, 441, 475
CviKI_1 RGCY 7 cut(s) 83, 206, 229, 309, 343, 441, 475
CviQI GTAC 2 cut(s) 269, 450
DdeI CTNAG 2 cut(s) 12, 135
DpnI GATC 2 cut(s) 140, 213
DpnII GATC 2 cut(s) 138, 211
Eco130I CCWWGG 1 cut(s) 290
Eco147I AGGCCT 1 cut(s) 441
Eco47I GGWCC 2 cut(s) 287, 350
Eco88I CYCGRG 1 cut(s) 207
EcoO109I RGGNCCY 1 cut(s) 287
EcoT14I CCWWGG 1 cut(s) 290
ErhI CCWWGG 1 cut(s) 290
FaeI CATG 1 cut(s) 361
FaiI YATR 7 cut(s) 60, 131, 233, 282, 359, 393, 417
FaqI GGGAC 1 cut(s) 425
FatI CATG 1 cut(s) 357
Fnu4HI GCNGC 2 cut(s) 227, 329
Fsp4HI GCNGC 2 cut(s) 227, 329
FspBI CTAG 2 cut(s) 77, 291
GluI GCNGC 2 cut(s) 227, 329
HaeIII GGCC 1 cut(s) 441
Hin1II CATG 1 cut(s) 361
HindIII AAGCTT 3 cut(s) 81, 307, 473
HinfI GANTC 3 cut(s) 170, 194, 246
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 4 cut(s) 15, 193, 199, 373
Hpy188III TCNNGA 2 cut(s) 209, 250
Hpy8I GTNNAC 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 406
HpyCH4V TGCA 2 cut(s) 226, 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 315
HpyF3I CTNAG 2 cut(s) 12, 135
Hsp92II CATG 1 cut(s) 361
KpnI GGTACC 1 cut(s) 453
Kzo9I GATC 2 cut(s) 138, 211
LpnPI CCDG 5 cut(s) 111, 177, 250, 257, 306
Lsp1109I GCAGC 2 cut(s) 238, 315
LweI GCATC 1 cut(s) 112
MaeI CTAG 2 cut(s) 77, 291
MalI GATC 2 cut(s) 140, 213
MboI GATC 2 cut(s) 138, 211
MboII GAAGA 1 cut(s) 386
MflI RGATCY 2 cut(s) 138, 211
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 2 cut(s) 147, 388
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 9 cut(s) 21, 153, 184, 193, 199, 213, 278, 393, 463
MseI TTAA 3 cut(s) 108, 180, 471
MslI CAYNNNNRTG 1 cut(s) 323
Mva1269I GAATGC 1 cut(s) 330
MwoI GCNNNNNNNGC 1 cut(s) 315
NdeII GATC 2 cut(s) 138, 211
NlaIII CATG 1 cut(s) 361
NlaIV GGNNCC 2 cut(s) 48, 451
PaeR7I CTCGAG 1 cut(s) 207
PceI AGGCCT 1 cut(s) 441
PctI GAATGC 1 cut(s) 330
PfeI GAWTC 2 cut(s) 194, 246
PkrI GCNGC 2 cut(s) 228, 330
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PpuMI RGGWCCY 1 cut(s) 287
Psp5II RGGWCCY 1 cut(s) 287
PspN4I GGNNCC 2 cut(s) 48, 451
PspPI GGNCC 2 cut(s) 287, 350
PspPPI RGGWCCY 1 cut(s) 287
PsuI RGATCY 2 cut(s) 138, 211
RsaI GTAC 2 cut(s) 270, 451
RsaNI GTAC 2 cut(s) 269, 450
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 3 cut(s) 108, 180, 471
SatI GCNGC 2 cut(s) 227, 329
Sau3AI GATC 2 cut(s) 138, 211
Sau96I GGNCC 2 cut(s) 287, 350
SchI GAGTC 1 cut(s) 164
SduI GDGCHC 1 cut(s) 264
SfaNI GCATC 1 cut(s) 112
Sfr274I CTCGAG 1 cut(s) 207
SinI GGWCC 2 cut(s) 287, 350
SlaI CTCGAG 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 207
SmoI CTYRAG 1 cut(s) 207
Sse9I AATT 2 cut(s) 147, 388
SseBI AGGCCT 1 cut(s) 441
SspMI CTAG 2 cut(s) 77, 291
StuI AGGCCT 1 cut(s) 441
StyI CCWWGG 1 cut(s) 290
TaaI ACNGT 1 cut(s) 406
TaqI TCGA 2 cut(s) 208, 335
TasI AATT 2 cut(s) 147, 388
TfiI GAWTC 2 cut(s) 194, 246
Tru1I TTAA 3 cut(s) 108, 180, 471
Tru9I TTAA 3 cut(s) 108, 180, 471
TseI GCWGC 2 cut(s) 226, 328
TspGWI ACGGA 1 cut(s) 363
VpaK11BI GGWCC 2 cut(s) 287, 350
XapI RAATTY 1 cut(s) 147
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XhoI CTCGAG 1 cut(s) 207
XmaJI CCTAGG 1 cut(s) 290
XspI CTAG 2 cut(s) 77, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.