Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005170

Physical Location & Seq

Genomic Coordinates Forward (+)

18051666 .. 18053413

Gene Structure 1748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012378

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGAAGCTGTATATCATAGTGAGGCTGAGAAGATGGTGAAAGAATTTGACGAAACCAAAGCTGGTGTCAAAGGAATTGTCGACTCTGGAGTGACCAAGATCCCAAGAATCTTCGTACACCCTTCACAGGATTTGCAACAAAACAACATGGATCATGATCTCCGAGTTCCAATGATTGATCTCAAAGGCCTTGATCAGAGCCCCGAGAGGCGAAAAGAAGTCATCAATCAGATAAGCAAAGCTGCTGAAGCGTGGGGCTTCTTTCAGATAGCGAACCATGGAGTTCCACTTGATGTTATGGAGGAGATGCTGAAAAGTGTTCGATGCTTTCACGAGCAGCCCCATGAAGCCAAGGTGGAGTGGTACTCGCGCGATTTCAAGAAGAAGGCATTCAACTACTTCAGCAACGGAGATTTGAAGGCGTCGACTCCGGTTGGCTGGAGGGACAGTTTCTCCTGGCAGCTGCAGAGGGAAATTGTTGAGTACGGTAAGCACATGATTCAACTACAAGAGAAGCTCTCTGAATTATTGTCCGAAGCTTTAGGTCTGAGCACTGACTACCTTTCAAGCCTAGGGTGCTTTAAGTCGACATCACTGGTTGGCCACTATTACCCGGTTTGCCCAGAGCCCCATCTAACTTTAGGCGCAAGCAAGCACTCGGATATCTCCTTTCTCACTCTGCTCCTTCAAGACACTGTCGGTGGCCTCCAAGTGCTTCATCAAAATGTTTGGGTGGATGTGCCACCAGTGCAAGGAGCTTTGATAGCAAATCTAGGCGACTTGATGCAGATCACTAGTAATGACAAGTTCAAGAGTGTGGAGCACAGAGTTTTGGCAACCAGGACCGCGGAACCCCGAACATCAGTTGCATGTTTTTTCAGTGCAGAGGACAAGCTCAAACCATTTGGGCCATTCAAGGAGCTTGTTTCAAAAACCCATCCCCCAATTTACAGAGACAATATCAGTTTTGGAGAATACATGGCATATTATAGGCTCAAGGGGGAAGATGGAAACTCTTCTCTGCCTCTGTTTAGACTCGTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

349

Amino Acids

39.49

Weight (kDa)

6.17

Isoelectric Point (pI)

33.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	56 - 156	3.2e-20	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	199 - 294	1.1e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005170)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03211 FvH4_2g21890
malus_domestica	MD05G1014100.v1.1
prunus_persica	Prupe.8G226600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0392041 RchiOBHm_Chr6g0288791
rosa_laevigata	RLG00000009843 RLG00000012366 RLG00000012368 RLG00000012372 RLG00000012377 RLG00000012378 RLG00000012380
rosa_multiflora	Rmu_co8406507.1_g000001 Rmu_sc0004928.1_g000001 Rmu_sc0005091.1_g000008 Rmu_sc0005314.1_g000026
rosa_roxburghii	Rroxscaffold_7G00179880 Rroxscaffold_7G00179900
rosa_rugosa	Rorug04G0006500 Rorug06G0198100 Rorug06G0198200 Rorug06G0198300
rosa_samantha	Rh4CG043100 Rh6AG045200 Rh6BG315200 Rh6BG315400 Rh6CG322900 Rh6DG308600
rosa_wichuraiana	Rw6G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	81, 425, 587
AccII	CGCG	3 cut(s)	370, 372, 848
AciI	CCGC	2 cut(s)	846, 848
AclWI	GGATC	2 cut(s)	94, 159
AcoI	YGGCCR	1 cut(s)	601
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	2 cut(s)	267, 385
AcyI	GRCGYC	1 cut(s)	422
AfaI	GTAC	3 cut(s)	117, 365, 485
AfiI	CCNNNNNNNGG	2 cut(s)	127, 752
AgsI	TTSAA	9 cut(s)	379, 394, 418, 503, 567, 689, 811, 916, 930
AhlI	ACTAGT	1 cut(s)	794
AjnI	CCWGG	2 cut(s)	455, 839
AluBI	AGCT	9 cut(s)	8, 62, 242, 463, 517, 539, 758, 895, 922
AluI	AGCT	9 cut(s)	8, 62, 242, 463, 517, 539, 758, 895, 922
Alw21I	GWGCWC	2 cut(s)	554, 825
Alw26I	GTCTC	1 cut(s)	948
AlwI	GGATC	2 cut(s)	94, 159
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	4 cut(s)	187, 601, 703, 908
ApeKI	GCWGC	4 cut(s)	242, 337, 460, 463
ApoI	RAATTY	1 cut(s)	44
ArsI	GACNNNNNNTTYG	4 cut(s)	51, 63, 83, 95
Asp700I	GAANNNNTTC	2 cut(s)	389, 1015
AspA2I	CCTAGG	1 cut(s)	571
AspLEI	GCGC	2 cut(s)	372, 647
AspS9I	GGNCC	2 cut(s)	843, 908
AsuC2I	CCSGG	1 cut(s)	614
AsuHPI	GGTGA	1 cut(s)	49
AvaI	CYCGRG	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	843
AvrII	CCTAGG	1 cut(s)	571
BalI	TGGCCA	1 cut(s)	603
BanII	GRGCYC	2 cut(s)	203, 630
BauI	CACGAG	2 cut(s)	332, 1037
Bbv12I	GWGCWC	2 cut(s)	554, 825
BbvI	GCAGC	4 cut(s)	229, 349, 450, 472
BccI	CCATC	4 cut(s)	28, 639, 945, 1001
BciT130I	CCWGG	2 cut(s)	457, 841
BclI	TGATCA	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	614
BcoDI	GTCTC	1 cut(s)	948
BcuI	ACTAGT	1 cut(s)	794
BfaI	CTAG	3 cut(s)	572, 773, 795
BfmI	CTRYAG	1 cut(s)	464
BisI	GCNGC	4 cut(s)	243, 338, 461, 464
BlnI	CCTAGG	1 cut(s)	571
BlsI	GCNGC	4 cut(s)	244, 339, 462, 465
Bme1390I	CCNGG	3 cut(s)	457, 614, 841
Bme18I	GGWCC	1 cut(s)	843
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	2 cut(s)	843, 908
BmiI	GGNNCC	1 cut(s)	852
BmrFI	CCNGG	3 cut(s)	457, 614, 841
BmsI	GCATC	3 cut(s)	297, 314, 774
BplI	GAGNNNNNCTC	4 cut(s)	350, 382, 503, 535
BpmI	CTGGAG	2 cut(s)	108, 460
BpuEI	CTTGAG	1 cut(s)	980
BpuMI	CCSGG	1 cut(s)	614
BsaBI	GATNNNNATC	2 cut(s)	156, 788
BsaHI	GRCGYC	1 cut(s)	422
BsaJI	CCNNGG	4 cut(s)	277, 351, 571, 846
BsaWI	WCCGGW	1 cut(s)	430
BsaXI	ACNNNNNCTCC	4 cut(s)	433, 437, 463, 467
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 752
Bse1I	ACTGG	2 cut(s)	600, 746
Bse8I	GATNNNNATC	2 cut(s)	156, 788
BseBI	CCWGG	2 cut(s)	457, 841
BseDI	CCNNGG	4 cut(s)	277, 351, 571, 846
BseGI	GGATG	2 cut(s)	742, 937
BseJI	GATNNNNATC	2 cut(s)	156, 788
BseLI	CCNNNNNNNGG	2 cut(s)	127, 752
BseMII	CTCAG	2 cut(s)	18, 539
BseNI	ACTGG	2 cut(s)	600, 746
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	4 cut(s)	229, 349, 450, 472
BsgI	GTGCAG	1 cut(s)	903
Bsh1236I	CGCG	3 cut(s)	370, 372, 848
BshFI	GGCC	4 cut(s)	189, 603, 705, 910
BsiHKAI	GWGCWC	2 cut(s)	554, 825
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	2 cut(s)	431, 614
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	2 cut(s)	127, 752
BsmAI	GTCTC	1 cut(s)	948
BsmFI	GGGAC	1 cut(s)	458
BsmI	GAATGC	1 cut(s)	389
BsnI	GGCC	4 cut(s)	189, 603, 705, 910
BsoBI	CYCGRG	1 cut(s)	203
Bsp1286I	GDGCHC	4 cut(s)	203, 554, 630, 825
Bsp143I	GATC	6 cut(s)	99, 151, 157, 178, 193, 789
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	2 cut(s)	846, 848
BspANI	GGCC	4 cut(s)	189, 603, 705, 910
BspCNI	CTCAG	2 cut(s)	19, 540
BspFNI	CGCG	3 cut(s)	370, 372, 848
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	852
BspMAI	CTGCAG	1 cut(s)	468
BspPI	GGATC	2 cut(s)	94, 159
BsrI	ACTGG	2 cut(s)	600, 746
BssECI	CCNNGG	4 cut(s)	277, 351, 571, 846
BssMI	GATC	6 cut(s)	99, 151, 157, 178, 193, 789
BssNI	GRCGYC	1 cut(s)	422
BssSI	CACGAG	2 cut(s)	332, 1037
BssT1I	CCWWGG	3 cut(s)	277, 351, 571
Bst2BI	CACGAG	2 cut(s)	332, 1037
Bst2UI	CCWGG	2 cut(s)	457, 841
Bst4CI	ACNGT	3 cut(s)	449, 488, 697
Bst6I	CTCTTC	1 cut(s)	1021
BstACI	GRCGYC	1 cut(s)	422
BstC8I	GCNNGC	2 cut(s)	649, 653
BstDEI	CTNAG	2 cut(s)	27, 548
BstDSI	CCRYGG	2 cut(s)	277, 846
BstF5I	GGATG	2 cut(s)	742, 937
BstFNI	CGCG	3 cut(s)	370, 372, 848
BstHHI	GCGC	2 cut(s)	372, 647
BstKTI	GATC	6 cut(s)	102, 154, 160, 181, 196, 792
BstMAI	GTCTC	1 cut(s)	948
BstMBI	GATC	6 cut(s)	99, 151, 157, 178, 193, 789
BstMWI	GCNNNNNNNGC	4 cut(s)	248, 576, 748, 764
BstNI	CCWGG	2 cut(s)	457, 841
BstNSI	RCATGY	1 cut(s)	873
BstSCI	CCNGG	3 cut(s)	455, 612, 839
BstSFI	CTRYAG	1 cut(s)	464
BstUI	CGCG	3 cut(s)	370, 372, 848
BstV1I	GCAGC	4 cut(s)	229, 349, 450, 472
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BsuRI	GGCC	4 cut(s)	189, 603, 705, 910
BtgI	CCRYGG	2 cut(s)	277, 846
BtsCI	GGATG	2 cut(s)	742, 937
BtsIMutI	CAGTG	5 cut(s)	552, 593, 693, 753, 886
Cac8I	GCNNGC	2 cut(s)	649, 653
CciI	TCATGA	1 cut(s)	154
CfoI	GCGC	2 cut(s)	372, 647
Cfr13I	GGNCC	2 cut(s)	843, 908
Cfr42I	CCGCGG	1 cut(s)	849
CseI	GACGC	1 cut(s)	411
Csp6I	GTAC	3 cut(s)	116, 364, 484
CviAII	CATG	7 cut(s)	148, 155, 278, 344, 496, 870, 979
CviQI	GTAC	3 cut(s)	116, 364, 484
DdeI	CTNAG	2 cut(s)	27, 548
DpnI	GATC	6 cut(s)	101, 153, 159, 180, 195, 791
DpnII	GATC	6 cut(s)	99, 151, 157, 178, 193, 789
EaeI	YGGCCR	1 cut(s)	601
Eam1104I	CTCTTC	1 cut(s)	1021
EarI	CTCTTC	1 cut(s)	1021
Eco130I	CCWWGG	3 cut(s)	277, 351, 571
Eco147I	AGGCCT	1 cut(s)	189
Eco24I	GRGCYC	2 cut(s)	203, 630
Eco32I	GATATC	1 cut(s)	664
Eco47I	GGWCC	1 cut(s)	843
Eco57I	CTGAAG	2 cut(s)	267, 385
Eco88I	CYCGRG	1 cut(s)	203
EcoRII	CCWGG	2 cut(s)	455, 839
EcoRV	GATATC	1 cut(s)	664
EcoT14I	CCWWGG	3 cut(s)	277, 351, 571
EcoT38I	GRGCYC	2 cut(s)	203, 630
ErhI	CCWWGG	3 cut(s)	277, 351, 571
FaeI	CATG	7 cut(s)	151, 158, 281, 347, 499, 873, 982
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	7 cut(s)	147, 154, 277, 343, 495, 869, 978
FbaI	TGATCA	1 cut(s)	193
FblI	GTMKAC	3 cut(s)	81, 425, 587
Fnu4HI	GCNGC	4 cut(s)	243, 338, 461, 464
FokI	GGATG	2 cut(s)	749, 924
FriOI	GRGCYC	2 cut(s)	203, 630
Fsp4HI	GCNGC	4 cut(s)	243, 338, 461, 464
FspBI	CTAG	3 cut(s)	572, 773, 795
GlaI	GCGC	2 cut(s)	371, 646
GluI	GCNGC	4 cut(s)	243, 338, 461, 464
GsuI	CTGGAG	2 cut(s)	108, 460
HaeIII	GGCC	4 cut(s)	189, 603, 705, 910
HapII	CCGG	2 cut(s)	431, 614
HgaI	GACGC	1 cut(s)	411
HhaI	GCGC	2 cut(s)	372, 647
Hin1I	GRCGYC	1 cut(s)	422
Hin1II	CATG	7 cut(s)	151, 158, 281, 347, 499, 873, 982
Hin6I	GCGC	2 cut(s)	370, 645
HinP1I	GCGC	2 cut(s)	370, 645
HincII	GTYRAC	3 cut(s)	82, 426, 588
HindII	GTYRAC	3 cut(s)	82, 426, 588
HindIII	AAGCTT	1 cut(s)	537
HinfI	GANTC	5 cut(s)	83, 108, 427, 499, 1035
HpaII	CCGG	2 cut(s)	431, 614
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	4 cut(s)	82, 118, 426, 588
Hpy188I	TCNGA	8 cut(s)	164, 198, 231, 267, 523, 535, 549, 661
Hpy188III	TCNNGA	6 cut(s)	87, 155, 332, 379, 689, 811
Hpy8I	GTNNAC	4 cut(s)	82, 118, 426, 588
Hpy99I	CGWCG	1 cut(s)	427
HpyAV	CCTTC	4 cut(s)	132, 379, 412, 695
HpyCH4III	ACNGT	3 cut(s)	449, 488, 697
HpyCH4V	TGCA	7 cut(s)	136, 466, 751, 787, 869, 884, 1042
HpyF10VI	GCNNNNNNNGC	4 cut(s)	248, 576, 748, 764
HpyF3I	CTNAG	2 cut(s)	27, 548
Hsp92I	GRCGYC	1 cut(s)	422
Hsp92II	CATG	7 cut(s)	151, 158, 281, 347, 499, 873, 982
HspAI	GCGC	2 cut(s)	370, 645
Ksp22I	TGATCA	1 cut(s)	193
KspI	CCGCGG	1 cut(s)	849
Kzo9I	GATC	6 cut(s)	99, 151, 157, 178, 193, 789
LmnI	GCTCC	4 cut(s)	687, 755, 820, 919
Lsp1109I	GCAGC	4 cut(s)	229, 349, 450, 472
LweI	GCATC	3 cut(s)	297, 314, 774
MaeI	CTAG	3 cut(s)	572, 773, 795
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	6 cut(s)	101, 153, 159, 180, 195, 791
MboI	GATC	6 cut(s)	99, 151, 157, 178, 193, 789
MboII	GAAGA	5 cut(s)	43, 103, 394, 1008, 1016
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	4 cut(s)	203, 554, 630, 825
MlsI	TGGCCA	1 cut(s)	603
MluCI	AATT	5 cut(s)	44, 75, 474, 524, 945
MluNI	TGGCCA	1 cut(s)	603
MlyI	GAGTC	3 cut(s)	77, 421, 1029
MnlI	CCTC	8 cut(s)	16, 201, 295, 435, 462, 716, 880, 1035
Mox20I	TGGCCA	1 cut(s)	603
MroXI	GAANNNNTTC	2 cut(s)	389, 1015
MscI	TGGCCA	1 cut(s)	603
MseI	TTAA	2 cut(s)	582, 1045
MslI	CAYNNNNRTG	1 cut(s)	723
Msp20I	TGGCCA	1 cut(s)	603
MspA1I	CMGCKG	2 cut(s)	463, 848
MspI	CCGG	2 cut(s)	431, 614
MspR9I	CCNGG	3 cut(s)	457, 614, 841
Mva1269I	GAATGC	1 cut(s)	389
MvaI	CCWGG	2 cut(s)	457, 841
MvnI	CGCG	3 cut(s)	370, 372, 848
MwoI	GCNNNNNNNGC	4 cut(s)	248, 576, 748, 764
NciI	CCSGG	1 cut(s)	614
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	6 cut(s)	99, 151, 157, 178, 193, 789
NlaIII	CATG	7 cut(s)	151, 158, 281, 347, 499, 873, 982
NlaIV	GGNNCC	1 cut(s)	852
NmuCI	GTSAC	1 cut(s)	91
NspI	RCATGY	1 cut(s)	873
PagI	TCATGA	1 cut(s)	154
PceI	AGGCCT	1 cut(s)	189
PctI	GAATGC	1 cut(s)	389
PdmI	GAANNNNTTC	2 cut(s)	389, 1015
PfeI	GAWTC	2 cut(s)	108, 499
PflFI	GACNNNGTC	1 cut(s)	695
PkrI	GCNGC	4 cut(s)	244, 339, 462, 465
PleI	GAGTC	3 cut(s)	77, 421, 1029
PpsI	GAGTC	3 cut(s)	77, 421, 1029
Psp6I	CCWGG	2 cut(s)	455, 839
PspGI	CCWGG	2 cut(s)	455, 839
PspN4I	GGNNCC	1 cut(s)	852
PspPI	GGNCC	2 cut(s)	843, 908
PstI	CTGCAG	1 cut(s)	468
PsuI	RGATCY	1 cut(s)	99
PsyI	GACNNNGTC	1 cut(s)	695
PvuII	CAGCTG	1 cut(s)	463
RsaI	GTAC	3 cut(s)	117, 365, 485
RsaNI	GTAC	3 cut(s)	116, 364, 484
RseI	CAYNNNNRTG	1 cut(s)	723
SacII	CCGCGG	1 cut(s)	849
SalI	GTCGAC	3 cut(s)	80, 424, 586
SaqAI	TTAA	2 cut(s)	582, 1045
SatI	GCNGC	4 cut(s)	243, 338, 461, 464
Sau3AI	GATC	6 cut(s)	99, 151, 157, 178, 193, 789
Sau96I	GGNCC	2 cut(s)	843, 908
SchI	GAGTC	3 cut(s)	77, 421, 1029
ScrFI	CCNGG	3 cut(s)	457, 614, 841
SduI	GDGCHC	4 cut(s)	203, 554, 630, 825
SfaNI	GCATC	3 cut(s)	297, 314, 774
SfcI	CTRYAG	1 cut(s)	464
Sfr303I	CCGCGG	1 cut(s)	849
SgrBI	CCGCGG	1 cut(s)	849
SinI	GGWCC	1 cut(s)	843
SmiMI	CAYNNNNRTG	1 cut(s)	723
SmlI	CTYRAG	1 cut(s)	995
SmoI	CTYRAG	1 cut(s)	995
SpeI	ACTAGT	1 cut(s)	794
Sse9I	AATT	5 cut(s)	44, 75, 474, 524, 945
SseBI	AGGCCT	1 cut(s)	189
SsiI	CCGC	2 cut(s)	846, 848
SspMI	CTAG	3 cut(s)	572, 773, 795
StuI	AGGCCT	1 cut(s)	189
StyD4I	CCNGG	3 cut(s)	455, 612, 839
StyI	CCWWGG	3 cut(s)	277, 351, 571
TaaI	ACNGT	3 cut(s)	449, 488, 697
TaqI	TCGA	4 cut(s)	81, 322, 425, 587
TasI	AATT	5 cut(s)	44, 75, 474, 524, 945
TfiI	GAWTC	2 cut(s)	108, 499
Tru1I	TTAA	2 cut(s)	582, 1045
Tru9I	TTAA	2 cut(s)	582, 1045
TscAI	CASTG	5 cut(s)	559, 600, 700, 753, 886
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	4 cut(s)	242, 337, 460, 463
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	2 cut(s)	360, 707
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	5 cut(s)	559, 600, 700, 753, 886
Tth111I	GACNNNGTC	1 cut(s)	695
VpaK11BI	GGWCC	1 cut(s)	843
XapI	RAATTY	1 cut(s)	44
XceI	RCATGY	1 cut(s)	873
XmaJI	CCTAGG	1 cut(s)	571
XmiI	GTMKAC	3 cut(s)	81, 425, 587
XmnI	GAANNNNTTC	2 cut(s)	389, 1015
XspI	CTAG	3 cut(s)	572, 773, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.