Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004928.1

Orthogroup ID

OG0005170

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 468

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004928.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

cttatatcaaatgacagattcaagagtgtagaacacagggtgctggcaaaccatagaggtcccagaatctcagttgcaggttttttcagcacaggactgctgccattggcaaagctctacggaccaattaaggagatattatcagaagacaatcctccaaagtacagggagaccactttaagggactatgatgcatactacagagaaaaaagccttgatggcaggtctaccttgactcattataagctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

83

Amino Acids

9.6

Weight (kDa)

9.52

Isoelectric Point (pI)

25.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005170)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03211 FvH4_2g21890
malus_domestica	MD05G1014100.v1.1
prunus_persica	Prupe.8G226600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0392041 RchiOBHm_Chr6g0288791
rosa_laevigata	RLG00000009843 RLG00000012366 RLG00000012368 RLG00000012372 RLG00000012377 RLG00000012378 RLG00000012380
rosa_multiflora	Rmu_co8406507.1_g000001 Rmu_sc0004928.1_g000001 Rmu_sc0005091.1_g000008 Rmu_sc0005314.1_g000026
rosa_roxburghii	Rroxscaffold_7G00179880 Rroxscaffold_7G00179900
rosa_rugosa	Rorug04G0006500 Rorug06G0198100 Rorug06G0198200 Rorug06G0198300
rosa_samantha	Rh4CG043100 Rh6AG045200 Rh6BG315200 Rh6BG315400 Rh6CG322900 Rh6DG308600
rosa_wichuraiana	Rw6G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	243
Acc36I	ACCTGC	2 cut(s)	68, 213
AccI	GTMKAC	1 cut(s)	227
AdeI	CACNNNGTG	1 cut(s)	40
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	180
AgsI	TTSAA	1 cut(s)	22
AluBI	AGCT	2 cut(s)	115, 247
AluI	AGCT	2 cut(s)	115, 247
Alw26I	GTCTC	1 cut(s)	164
ApeKI	GCWGC	1 cut(s)	100
AspS9I	GGNCC	2 cut(s)	59, 122
AvaII	GGWCC	2 cut(s)	59, 122
BbsI	GAAGAC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	199
BfuAI	ACCTGC	2 cut(s)	68, 213
BglI	GCCNNNNNGGC	1 cut(s)	219
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
Bme18I	GGWCC	2 cut(s)	59, 122
BmgT120I	GGNCC	2 cut(s)	59, 122
BmiI	GGNNCC	1 cut(s)	61
BmsI	GCATC	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	87
BslFI	GGGAC	2 cut(s)	45, 197
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmAI	GTCTC	1 cut(s)	164
BsmFI	GGGAC	2 cut(s)	45, 197
Bso31I	GGTCTC	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	61
BspMI	ACCTGC	2 cut(s)	68, 213
BspTNI	GGTCTC	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	70
BstMAI	GTCTC	1 cut(s)	164
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	87
BstV2I	GAAGAC	1 cut(s)	153
BveI	ACCTGC	2 cut(s)	68, 213
Cac8I	GCNNGC	1 cut(s)	45
Cfr13I	GGNCC	2 cut(s)	59, 122
Csp6I	GTAC	1 cut(s)	163
CviJI	RGCY	3 cut(s)	115, 213, 247
CviKI_1	RGCY	3 cut(s)	115, 213, 247
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	70
DraIII	CACNNNGTG	1 cut(s)	40
Eco31I	GGTCTC	1 cut(s)	164
Eco47I	GGWCC	2 cut(s)	59, 122
EcoO109I	RGGNCCY	1 cut(s)	59
EcoT22I	ATGCAT	1 cut(s)	196
FaiI	YATR	5 cut(s)	5, 54, 189, 196, 243
FaqI	GGGAC	2 cut(s)	45, 197
FblI	GTMKAC	1 cut(s)	227
Fnu4HI	GCNGC	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	101
GluI	GCNGC	1 cut(s)	101
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	3 cut(s)	18, 66, 235
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	1 cut(s)	228
HpyCH4V	TGCA	2 cut(s)	77, 194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
HpyF3I	CTNAG	1 cut(s)	70
LpnPI	CCDG	7 cut(s)	22, 29, 63, 76, 78, 151, 208
Lsp1109I	GCAGC	1 cut(s)	87
LweI	GCATC	1 cut(s)	181
MboII	GAAGA	1 cut(s)	158
MluCI	AATT	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	229
MnlI	CCTC	2 cut(s)	50, 165
Mph1103I	ATGCAT	1 cut(s)	196
MseI	TTAA	2 cut(s)	129, 179
MwoI	GCNNNNNNNGC	1 cut(s)	219
NlaIV	GGNNCC	1 cut(s)	61
NsiI	ATGCAT	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	18, 66
PkrI	GCNGC	1 cut(s)	102
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PpuMI	RGGWCCY	1 cut(s)	59
PsiI	TTATAA	1 cut(s)	243
Psp5II	RGGWCCY	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	2 cut(s)	59, 122
PspPPI	RGGWCCY	1 cut(s)	59
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SaqAI	TTAA	2 cut(s)	129, 179
SatI	GCNGC	1 cut(s)	101
Sau96I	GGNCC	2 cut(s)	59, 122
SchI	GAGTC	1 cut(s)	229
SetI	ASST	6 cut(s)	61, 82, 117, 227, 233, 249
SfaNI	GCATC	1 cut(s)	181
SfcI	CTRYAG	1 cut(s)	199
SinI	GGWCC	2 cut(s)	59, 122
Sse9I	AATT	1 cut(s)	126
TasI	AATT	1 cut(s)	126
TatI	WGTACW	1 cut(s)	162
TfiI	GAWTC	2 cut(s)	18, 66
Tru1I	TTAA	2 cut(s)	129, 179
Tru9I	TTAA	2 cut(s)	129, 179
TseI	GCWGC	1 cut(s)	100
TspGWI	ACGGA	1 cut(s)	135
VpaK11BI	GGWCC	2 cut(s)	59, 122
XmiI	GTMKAC	1 cut(s)	227
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.