Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005170

Physical Location & Seq

Genomic Coordinates Forward (+)

19364888 .. 19366561

Gene Structure 1674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00179880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGAAGCTGTGGATCATAGTGAGGCCGAGAAGAGGGTGAAAGAATTTCACGAATCCAAAGCTGGTGTCAAAGGAATTGTTGACTCTGGATTGACCAAGATCCCACCAATGTTCGTACACCCTCCAGAGGAGTTGCAACGTAGCAACATGGATCATGATTTCCGAGTTCCAATGATTGATCTCAAGGGCCTTGATCAGAGCACCGAGAGGCGAAAAGAAGTCATCAATGAGATGAGCAAAGCAGCTGAAGCATGGGGATTCTTTCAGATAGTGAACCATGGAGTTCCACTTGAAGTTATGGAGGAGGTGCTGAAAAGTGTTCGACGATTTCACGAGCAGCCCAATGAAGCCAAGGTGGAGTGGTACTCGCGCGATTTCAAGAAGAAGGCGTTCAACTACTTCAGCAACGGAGATTTGAAGGCGTCGACTCCGGCTGGCTGGAGGGACACTTTCTCCTGGCAGCTGCAGTTCCCAGAAGATGAAAGAACTCTCAAGCACTGCCTCAAGTCTGCAGGGGCAAGTTTAAGGGAAATTGTTGAGTACGGTAAGCACATGACTAAACTACAAGAGAGGCTCTCTGAATTATTGTCCGAAGCTTTAGGTCTGAGCACTGACTATCTTTCAAGCCTAGGGTGCTTTAAGTCGACATCACTGGTTGGCCACTATTACCCGGTTTGCCCAGAGCCCCATCTAACTTTAGGCGCAAGCAAGCACTCGGACATCTCCTTTCTCACTCTGCTCCTTCAAGACAGTGTCGGTGGCCTCCAAGTGCTTCATCAAAATGTTTGGGTGGATGTGACACCAGTGCAAGGAGCTTTGGTAGCAAATCTAGGCGACTTGATGCAGATCACTAGTAATGACAAGTTCAAGAGTGTGGAGCACAGGGTTTTGGCAACCAGGACCACTGAACCCCGAACATCAGTTGCATGTTTTTTCAGTGCAGAGGACAAGCTCAAACCATTTGGGCCGTTCAAGGAGCTTGTTTCCGAAACCCATCCCCCAATTTACAGAGACAATATCAGTTTTGGAGAATACATGGCATATTATAGGCTCAAGGGGCAAGATGGAAACTCTTCTCTGCCTCTGTTTAGACTCGTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

367

Amino Acids

41.66

Weight (kDa)

6.22

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	56 - 163	2.2e-22	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	218 - 313	3.1e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005170)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03211 FvH4_2g21890
malus_domestica	MD05G1014100.v1.1
prunus_persica	Prupe.8G226600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0392041 RchiOBHm_Chr6g0288791
rosa_laevigata	RLG00000009843 RLG00000012366 RLG00000012368 RLG00000012372 RLG00000012377 RLG00000012378 RLG00000012380
rosa_multiflora	Rmu_co8406507.1_g000001 Rmu_sc0004928.1_g000001 Rmu_sc0005091.1_g000008 Rmu_sc0005314.1_g000026
rosa_roxburghii	Rroxscaffold_7G00179880 Rroxscaffold_7G00179900
rosa_rugosa	Rorug04G0006500 Rorug06G0198100 Rorug06G0198200 Rorug06G0198300
rosa_samantha	Rh4CG043100 Rh6AG045200 Rh6BG315200 Rh6BG315400 Rh6CG322900 Rh6DG308600
rosa_wichuraiana	Rw6G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	425, 644
AccII	CGCG	2 cut(s)	370, 372
AclWI	GGATC	3 cut(s)	21, 94, 159
AcoI	YGGCCR	1 cut(s)	658
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	2 cut(s)	267, 385
AcyI	GRCGYC	1 cut(s)	422
AfaI	GTAC	3 cut(s)	117, 365, 542
AfiI	CCNNNNNNNGG	3 cut(s)	33, 127, 809
AgsI	TTSAA	8 cut(s)	293, 379, 394, 418, 624, 746, 868, 973
AhlI	ACTAGT	1 cut(s)	851
AjnI	CCWGG	2 cut(s)	455, 896
AluBI	AGCT	8 cut(s)	8, 62, 245, 463, 596, 815, 952, 979
AluI	AGCT	8 cut(s)	8, 62, 245, 463, 596, 815, 952, 979
Alw21I	GWGCWC	3 cut(s)	203, 611, 882
Alw26I	GTCTC	1 cut(s)	1005
AlwI	GGATC	3 cut(s)	21, 94, 159
AoxI	GGCC	5 cut(s)	24, 187, 658, 760, 965
ApeKI	GCWGC	4 cut(s)	242, 337, 460, 463
ApoI	RAATTY	1 cut(s)	44
ArsI	GACNNNNNNTTYG	2 cut(s)	51, 83
Asp700I	GAANNNNTTC	2 cut(s)	389, 1072
AspA2I	CCTAGG	1 cut(s)	628
AspLEI	GCGC	2 cut(s)	372, 704
AspS9I	GGNCC	3 cut(s)	187, 900, 965
AsuC2I	CCSGG	1 cut(s)	671
AsuHPI	GGTGA	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	900
AvrII	CCTAGG	1 cut(s)	628
BalI	TGGCCA	1 cut(s)	660
BanII	GRGCYC	1 cut(s)	687
BauI	CACGAG	2 cut(s)	332, 1094
Bbv12I	GWGCWC	3 cut(s)	203, 611, 882
BbvI	GCAGC	4 cut(s)	254, 349, 450, 472
BccI	CCATC	3 cut(s)	696, 1002, 1058
BceAI	ACGGC	1 cut(s)	952
BciT130I	CCWGG	2 cut(s)	457, 898
BclI	TGATCA	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	671
BcoDI	GTCTC	1 cut(s)	1005
BcuI	ACTAGT	1 cut(s)	851
BfaI	CTAG	3 cut(s)	629, 830, 852
BfmI	CTRYAG	2 cut(s)	464, 510
BisI	GCNGC	4 cut(s)	243, 338, 461, 464
BlnI	CCTAGG	1 cut(s)	628
BlsI	GCNGC	4 cut(s)	244, 339, 462, 465
Bme1390I	CCNGG	3 cut(s)	457, 671, 898
Bme18I	GGWCC	1 cut(s)	900
BmgT120I	GGNCC	3 cut(s)	187, 900, 965
BmrFI	CCNGG	3 cut(s)	457, 671, 898
BmsI	GCATC	1 cut(s)	831
BplI	GAGNNNNNCTC	4 cut(s)	350, 382, 560, 592
BpmI	CTGGAG	2 cut(s)	108, 460
BpuEI	CTTGAG	4 cut(s)	167, 476, 488, 1037
BpuMI	CCSGG	1 cut(s)	671
BsaBI	GATNNNNATC	1 cut(s)	845
BsaHI	GRCGYC	1 cut(s)	422
BsaJI	CCNNGG	3 cut(s)	277, 351, 628
BsaXI	ACNNNNNCTCC	4 cut(s)	437, 467, 804, 834
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 127, 809
Bse1I	ACTGG	2 cut(s)	657, 803
Bse8I	GATNNNNATC	1 cut(s)	845
BseBI	CCWGG	2 cut(s)	457, 898
BseDI	CCNNGG	3 cut(s)	277, 351, 628
BseGI	GGATG	2 cut(s)	799, 994
BseJI	GATNNNNATC	1 cut(s)	845
BseLI	CCNNNNNNNGG	3 cut(s)	33, 127, 809
BseMII	CTCAG	1 cut(s)	596
BseNI	ACTGG	2 cut(s)	657, 803
BseRI	GAGGAG	2 cut(s)	143, 317
BseXI	GCAGC	4 cut(s)	254, 349, 450, 472
BsgI	GTGCAG	1 cut(s)	960
Bsh1236I	CGCG	2 cut(s)	370, 372
BshFI	GGCC	5 cut(s)	26, 189, 660, 762, 967
BsiHKAI	GWGCWC	3 cut(s)	203, 611, 882
BsiSI	CCGG	2 cut(s)	431, 671
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	3 cut(s)	33, 127, 809
BsmAI	GTCTC	1 cut(s)	1005
BsmFI	GGGAC	1 cut(s)	458
BsnI	GGCC	5 cut(s)	26, 189, 660, 762, 967
Bsp1286I	GDGCHC	4 cut(s)	203, 611, 687, 882
Bsp143I	GATC	6 cut(s)	13, 99, 151, 178, 193, 846
Bsp19I	CCATGG	1 cut(s)	277
BspANI	GGCC	5 cut(s)	26, 189, 660, 762, 967
BspCNI	CTCAG	1 cut(s)	597
BspFNI	CGCG	2 cut(s)	370, 372
BspHI	TCATGA	1 cut(s)	154
BspMAI	CTGCAG	2 cut(s)	468, 514
BspPI	GGATC	3 cut(s)	21, 94, 159
BsrI	ACTGG	2 cut(s)	657, 803
BssECI	CCNNGG	3 cut(s)	277, 351, 628
BssMI	GATC	6 cut(s)	13, 99, 151, 178, 193, 846
BssNI	GRCGYC	1 cut(s)	422
BssSI	CACGAG	2 cut(s)	332, 1094
BssT1I	CCWWGG	3 cut(s)	277, 351, 628
Bst2BI	CACGAG	2 cut(s)	332, 1094
Bst2UI	CCWGG	2 cut(s)	457, 898
Bst4CI	ACNGT	2 cut(s)	545, 752
Bst6I	CTCTTC	2 cut(s)	26, 1078
BstACI	GRCGYC	1 cut(s)	422
BstC8I	GCNNGC	3 cut(s)	436, 706, 710
BstDEI	CTNAG	1 cut(s)	605
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	2 cut(s)	799, 994
BstFNI	CGCG	2 cut(s)	370, 372
BstHHI	GCGC	2 cut(s)	372, 704
BstKTI	GATC	6 cut(s)	16, 102, 154, 181, 196, 849
BstMAI	GTCTC	1 cut(s)	1005
BstMBI	GATC	6 cut(s)	13, 99, 151, 178, 193, 846
BstMWI	GCNNNNNNNGC	4 cut(s)	248, 633, 821, 1057
BstNI	CCWGG	2 cut(s)	457, 898
BstNSI	RCATGY	1 cut(s)	930
BstSCI	CCNGG	3 cut(s)	455, 669, 896
BstSFI	CTRYAG	2 cut(s)	464, 510
BstUI	CGCG	2 cut(s)	370, 372
BstV1I	GCAGC	4 cut(s)	254, 349, 450, 472
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BsuRI	GGCC	5 cut(s)	26, 189, 660, 762, 967
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	2 cut(s)	799, 994
BtsI	GCAGTG	1 cut(s)	496
BtsIMutI	CAGTG	7 cut(s)	496, 609, 650, 757, 810, 903, 943
Cac8I	GCNNGC	3 cut(s)	436, 706, 710
CciI	TCATGA	1 cut(s)	154
CfoI	GCGC	2 cut(s)	372, 704
Cfr13I	GGNCC	3 cut(s)	187, 900, 965
CseI	GACGC	1 cut(s)	411
Csp6I	GTAC	3 cut(s)	116, 364, 541
CviAII	CATG	7 cut(s)	148, 155, 252, 278, 553, 927, 1036
CviQI	GTAC	3 cut(s)	116, 364, 541
DdeI	CTNAG	1 cut(s)	605
DpnI	GATC	6 cut(s)	15, 101, 153, 180, 195, 848
DpnII	GATC	6 cut(s)	13, 99, 151, 178, 193, 846
EaeI	YGGCCR	1 cut(s)	658
Eam1104I	CTCTTC	2 cut(s)	26, 1078
EarI	CTCTTC	2 cut(s)	26, 1078
Eco130I	CCWWGG	3 cut(s)	277, 351, 628
Eco24I	GRGCYC	1 cut(s)	687
Eco47I	GGWCC	1 cut(s)	900
Eco57I	CTGAAG	2 cut(s)	267, 385
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	455, 896
EcoT14I	CCWWGG	3 cut(s)	277, 351, 628
EcoT38I	GRGCYC	1 cut(s)	687
ErhI	CCWWGG	3 cut(s)	277, 351, 628
FaeI	CATG	7 cut(s)	151, 158, 255, 281, 556, 930, 1039
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	7 cut(s)	147, 154, 251, 277, 552, 926, 1035
FbaI	TGATCA	1 cut(s)	193
FblI	GTMKAC	2 cut(s)	425, 644
Fnu4HI	GCNGC	4 cut(s)	243, 338, 461, 464
FokI	GGATG	2 cut(s)	806, 981
FriOI	GRGCYC	1 cut(s)	687
Fsp4HI	GCNGC	4 cut(s)	243, 338, 461, 464
FspBI	CTAG	3 cut(s)	629, 830, 852
GlaI	GCGC	2 cut(s)	371, 703
GluI	GCNGC	4 cut(s)	243, 338, 461, 464
GsuI	CTGGAG	2 cut(s)	108, 460
HaeIII	GGCC	5 cut(s)	26, 189, 660, 762, 967
HapII	CCGG	2 cut(s)	431, 671
HgaI	GACGC	1 cut(s)	411
HhaI	GCGC	2 cut(s)	372, 704
Hin1I	GRCGYC	1 cut(s)	422
Hin1II	CATG	7 cut(s)	151, 158, 255, 281, 556, 930, 1039
Hin6I	GCGC	2 cut(s)	370, 702
HinP1I	GCGC	2 cut(s)	370, 702
HincII	GTYRAC	3 cut(s)	82, 426, 645
HindII	GTYRAC	3 cut(s)	82, 426, 645
HindIII	AAGCTT	1 cut(s)	594
HinfI	GANTC	5 cut(s)	53, 83, 258, 427, 1092
HpaII	CCGG	2 cut(s)	431, 671
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	5 cut(s)	82, 118, 274, 426, 645
Hpy188I	TCNGA	8 cut(s)	164, 198, 267, 580, 592, 606, 718, 988
Hpy188III	TCNNGA	8 cut(s)	50, 87, 125, 155, 332, 379, 746, 868
Hpy8I	GTNNAC	5 cut(s)	82, 118, 274, 426, 645
Hpy99I	CGWCG	2 cut(s)	327, 427
HpyAV	CCTTC	3 cut(s)	379, 412, 752
HpyCH4III	ACNGT	2 cut(s)	545, 752
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	8 cut(s)	136, 466, 512, 808, 844, 926, 941, 1099
HpyF10VI	GCNNNNNNNGC	4 cut(s)	248, 633, 821, 1057
HpyF3I	CTNAG	1 cut(s)	605
HpySE526I	ACGT	1 cut(s)	139
Hsp92I	GRCGYC	1 cut(s)	422
Hsp92II	CATG	7 cut(s)	151, 158, 255, 281, 556, 930, 1039
HspAI	GCGC	2 cut(s)	370, 702
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	6 cut(s)	13, 99, 151, 178, 193, 846
LmnI	GCTCC	4 cut(s)	744, 812, 877, 976
Lsp1109I	GCAGC	4 cut(s)	254, 349, 450, 472
LweI	GCATC	1 cut(s)	831
MaeI	CTAG	3 cut(s)	629, 830, 852
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	1 cut(s)	796
MalI	GATC	6 cut(s)	15, 101, 153, 180, 195, 848
MboI	GATC	6 cut(s)	13, 99, 151, 178, 193, 846
MboII	GAAGA	4 cut(s)	43, 394, 488, 1065
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	4 cut(s)	203, 611, 687, 882
MlsI	TGGCCA	1 cut(s)	660
MluCI	AATT	5 cut(s)	44, 75, 531, 581, 1002
MluNI	TGGCCA	1 cut(s)	660
MlyI	GAGTC	3 cut(s)	77, 421, 1086
Mox20I	TGGCCA	1 cut(s)	660
MroXI	GAANNNNTTC	2 cut(s)	389, 1072
MscI	TGGCCA	1 cut(s)	660
MseI	TTAA	3 cut(s)	524, 639, 1102
MslI	CAYNNNNRTG	1 cut(s)	780
Msp20I	TGGCCA	1 cut(s)	660
MspA1I	CMGCKG	2 cut(s)	245, 463
MspI	CCGG	2 cut(s)	431, 671
MspR9I	CCNGG	3 cut(s)	457, 671, 898
MvaI	CCWGG	2 cut(s)	457, 898
MvnI	CGCG	2 cut(s)	370, 372
MwoI	GCNNNNNNNGC	4 cut(s)	248, 633, 821, 1057
NciI	CCSGG	1 cut(s)	671
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	6 cut(s)	13, 99, 151, 178, 193, 846
NlaIII	CATG	7 cut(s)	151, 158, 255, 281, 556, 930, 1039
NmeAIII	GCCGAG	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	796
NspI	RCATGY	1 cut(s)	930
PagI	TCATGA	1 cut(s)	154
PdmI	GAANNNNTTC	2 cut(s)	389, 1072
PfeI	GAWTC	2 cut(s)	53, 258
PflFI	GACNNNGTC	1 cut(s)	752
PkrI	GCNGC	4 cut(s)	244, 339, 462, 465
PleI	GAGTC	3 cut(s)	77, 421, 1086
PpsI	GAGTC	3 cut(s)	77, 421, 1086
Psp6I	CCWGG	2 cut(s)	455, 896
PspGI	CCWGG	2 cut(s)	455, 896
PspPI	GGNCC	3 cut(s)	187, 900, 965
PstI	CTGCAG	2 cut(s)	468, 514
PsuI	RGATCY	1 cut(s)	99
PsyI	GACNNNGTC	1 cut(s)	752
PvuII	CAGCTG	2 cut(s)	245, 463
RsaI	GTAC	3 cut(s)	117, 365, 542
RsaNI	GTAC	3 cut(s)	116, 364, 541
RseI	CAYNNNNRTG	1 cut(s)	780
SalI	GTCGAC	2 cut(s)	424, 643
SaqAI	TTAA	3 cut(s)	524, 639, 1102
SatI	GCNGC	4 cut(s)	243, 338, 461, 464
Sau3AI	GATC	6 cut(s)	13, 99, 151, 178, 193, 846
Sau96I	GGNCC	3 cut(s)	187, 900, 965
SchI	GAGTC	3 cut(s)	77, 421, 1086
ScrFI	CCNGG	3 cut(s)	457, 671, 898
SduI	GDGCHC	4 cut(s)	203, 611, 687, 882
SfaNI	GCATC	1 cut(s)	831
SfcI	CTRYAG	2 cut(s)	464, 510
SinI	GGWCC	1 cut(s)	900
SmiMI	CAYNNNNRTG	1 cut(s)	780
SmlI	CTYRAG	4 cut(s)	182, 491, 503, 1052
SmoI	CTYRAG	4 cut(s)	182, 491, 503, 1052
SpeI	ACTAGT	1 cut(s)	851
Sse9I	AATT	5 cut(s)	44, 75, 531, 581, 1002
SspMI	CTAG	3 cut(s)	629, 830, 852
StyD4I	CCNGG	3 cut(s)	455, 669, 896
StyI	CCWWGG	3 cut(s)	277, 351, 628
TaaI	ACNGT	2 cut(s)	545, 752
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	3 cut(s)	322, 425, 644
TasI	AATT	5 cut(s)	44, 75, 531, 581, 1002
TfiI	GAWTC	2 cut(s)	53, 258
Tru1I	TTAA	3 cut(s)	524, 639, 1102
Tru9I	TTAA	3 cut(s)	524, 639, 1102
TscAI	CASTG	7 cut(s)	503, 616, 657, 757, 810, 910, 943
TseFI	GTSAC	1 cut(s)	796
TseI	GCWGC	4 cut(s)	242, 337, 460, 463
Tsp45I	GTSAC	1 cut(s)	796
TspDTI	ATGAA	3 cut(s)	360, 495, 764
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	7 cut(s)	503, 616, 657, 757, 810, 910, 943
Tth111I	GACNNNGTC	1 cut(s)	752
VpaK11BI	GGWCC	1 cut(s)	900
XapI	RAATTY	1 cut(s)	44
XceI	RCATGY	1 cut(s)	930
XmaJI	CCTAGG	1 cut(s)	628
XmiI	GTMKAC	2 cut(s)	425, 644
XmnI	GAANNNNTTC	2 cut(s)	389, 1072
XspI	CTAG	3 cut(s)	629, 830, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.