Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005170

Physical Location & Seq

Genomic Coordinates Forward (+)

18114491 .. 18115774

Gene Structure 1284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012380

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAAGCTGTGGATCATAGTGAGGCTGAGAAGATGGTGAAAGAATTTGACGAAACCAAAGCTGGTGTCAAAGGAATTGTCGACTCTGGAGTGACCAAGATCCCAAGAATCTTCGTACACCCTCTACAGGATTTGCAACAAAACAACATGGATCATGATCTCCGAGTTCCAATGATTGATCTCAAAGGCCTTGATCAGAGCCCCGAGAGGCGAAAAGAAGTCATCAATCAGATAAGCAAAGCTGCTGAAGCGTGGGGCTTCTTTCAGATAGTGAACCATGGAGTTCCACTTGATGTTATGGAGGAGATGCTGAAAAGTGTTCGACGCTTTCACGAGCAGCCCCATGAAGCCAAGGTGGAATGGTACTCACGCGATTTTACAAAAAAGGTAAACTACTTCAGCAATGGCTATTTGAAGTTGTCCACTCCGGCGGATTGGAGGGACACGTTATCCTGCAACTGCCAGTTCCTAGAAGATGAAAGCAACTTCCAAGCGCTGCCTCCAGTATGCAGATGTGAAATTGTGGAGTACAGTAAGCACTTGACTGTACTCGGGGAGAAACTCTCCGAATTATTGTCTGAAGCTTTAGGCCTAAGCAGTGACTACCTTTCAACCCTAGGGTGCTTCAAATCATCAACACTATCGTGCCATTATTACCCAGTTTGCCCCGAGCCCCATTTGACTTTAGGTGCAACCAAGCACTCGGACATCCCCTTTCTCACTTTGCTGCTTCAGGACAGTAGTGGTGGCTTCCAAGTGCTTCATCAAAATGTTTGGGTTAACGTTCCTCCACTGCAGGGAGTTTTAGTAGCAAATATTGGCGACATGATGCAGATCACTAGCAATGACAAGTTCAAGAGTGTGGAGCACAGAGTTTTGGCAACACGACTTGCGGAGCCCCGAACATCAGTTGCATGTTTCTTCACTGCAGAGGACAAGCTCAAACCATTCGGGCCAATAAAAGAGCTCTTATCAGATGTCAATCCCCCAATTTATAGGAACAATATCAGTTTTGGGGAATACATAGCCTATCATAGGCAGAAGGGACAAGATGGAAACTCTGCAATTCCTCATTTTAGACTCATGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

364

Amino Acids

41.17

Weight (kDa)

5.97

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	56 - 161	1.2e-23	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	212 - 309	4.6e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005170)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03211 FvH4_2g21890
malus_domestica	MD05G1014100.v1.1
prunus_persica	Prupe.8G226600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0392041 RchiOBHm_Chr6g0288791
rosa_laevigata	RLG00000009843 RLG00000012366 RLG00000012368 RLG00000012372 RLG00000012377 RLG00000012378 RLG00000012380
rosa_multiflora	Rmu_co8406507.1_g000001 Rmu_sc0004928.1_g000001 Rmu_sc0005091.1_g000008 Rmu_sc0005314.1_g000026
rosa_roxburghii	Rroxscaffold_7G00179880 Rroxscaffold_7G00179900
rosa_rugosa	Rorug04G0006500 Rorug06G0198100 Rorug06G0198200 Rorug06G0198300
rosa_samantha	Rh4CG043100 Rh6AG045200 Rh6BG315200 Rh6BG315400 Rh6CG322900 Rh6DG308600
rosa_wichuraiana	Rw6G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	1 cut(s)	372
AciI	CCGC	2 cut(s)	431, 893
AclI	AACGTT	1 cut(s)	783
AclWI	GGATC	3 cut(s)	21, 94, 159
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	4 cut(s)	267, 382, 600, 716
AfaI	GTAC	4 cut(s)	117, 365, 530, 549
AfeI	AGCGCT	1 cut(s)	495
AfiI	CCNNNNNNNGG	3 cut(s)	127, 797, 1035
AflIII	ACRYGT	1 cut(s)	444
AgsI	TTSAA	4 cut(s)	415, 612, 628, 856
AleI	CACNNNNGTG	1 cut(s)	643
AluBI	AGCT	6 cut(s)	8, 62, 242, 584, 940, 967
AluI	AGCT	6 cut(s)	8, 62, 242, 584, 940, 967
Alw21I	GWGCWC	2 cut(s)	870, 969
AlwI	GGATC	3 cut(s)	21, 94, 159
Ama87I	CYCGRG	3 cut(s)	203, 551, 668
Aor51HI	AGCGCT	1 cut(s)	495
AoxI	GGCC	3 cut(s)	187, 589, 953
ApeKI	GCWGC	4 cut(s)	242, 337, 496, 727
ApoI	RAATTY	1 cut(s)	44
ArsI	GACNNNNNNTTYG	4 cut(s)	51, 63, 83, 95
AspA2I	CCTAGG	1 cut(s)	616
AspLEI	GCGC	1 cut(s)	496
AspS9I	GGNCC	1 cut(s)	953
AsuHPI	GGTGA	1 cut(s)	49
AvaI	CYCGRG	3 cut(s)	203, 551, 668
AvrII	CCTAGG	1 cut(s)	616
BanII	GRGCYC	4 cut(s)	203, 675, 900, 969
BauI	CACGAG	1 cut(s)	332
Bbv12I	GWGCWC	2 cut(s)	870, 969
BbvI	GCAGC	4 cut(s)	229, 349, 483, 714
BccI	CCATC	2 cut(s)	28, 1046
BclI	TGATCA	1 cut(s)	193
BfaI	CTAG	3 cut(s)	470, 617, 840
BfmI	CTRYAG	3 cut(s)	125, 794, 927
BfoI	RGCGCY	1 cut(s)	497
BisI	GCNGC	4 cut(s)	243, 338, 497, 728
BlnI	CCTAGG	1 cut(s)	616
BlsI	GCNGC	4 cut(s)	244, 339, 498, 729
BmeT110I	CYCGRG	3 cut(s)	203, 551, 668
BmgT120I	GGNCC	1 cut(s)	953
BmiI	GGNNCC	1 cut(s)	897
BmrI	ACTGGG	1 cut(s)	653
BmsI	GCATC	2 cut(s)	297, 819
BmuI	ACTGGG	1 cut(s)	653
BplI	GAGNNNNNCTC	2 cut(s)	548, 580
BpmI	CTGGAG	2 cut(s)	108, 486
Bpu10I	CCTNAGC	1 cut(s)	593
BsaBI	GATNNNNATC	3 cut(s)	156, 833, 981
BsaJI	CCNNGG	3 cut(s)	277, 351, 616
BsaXI	ACNNNNNCTCC	2 cut(s)	792, 822
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 797, 1035
Bse1I	ACTGG	3 cut(s)	463, 503, 659
Bse3DI	GCAATG	2 cut(s)	409, 850
Bse8I	GATNNNNATC	3 cut(s)	156, 833, 981
BseDI	CCNNGG	3 cut(s)	277, 351, 616
BseGI	GGATG	1 cut(s)	708
BseJI	GATNNNNATC	3 cut(s)	156, 833, 981
BseLI	CCNNNNNNNGG	3 cut(s)	127, 797, 1035
BseMI	GCAATG	2 cut(s)	409, 850
BseMII	CTCAG	1 cut(s)	18
BseNI	ACTGG	3 cut(s)	463, 503, 659
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	4 cut(s)	229, 349, 483, 714
Bsh1236I	CGCG	1 cut(s)	372
BshFI	GGCC	3 cut(s)	189, 591, 955
BsiHKAI	GWGCWC	2 cut(s)	870, 969
BsiHKCI	CYCGRG	3 cut(s)	203, 551, 668
BsiSI	CCGG	1 cut(s)	428
BslFI	GGGAC	2 cut(s)	455, 1059
BslI	CCNNNNNNNGG	3 cut(s)	127, 797, 1035
BsmFI	GGGAC	2 cut(s)	455, 1059
BsnI	GGCC	3 cut(s)	189, 591, 955
BsoBI	CYCGRG	3 cut(s)	203, 551, 668
Bsp1286I	GDGCHC	5 cut(s)	203, 675, 870, 900, 969
Bsp143I	GATC	7 cut(s)	13, 99, 151, 157, 178, 193, 834
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	2 cut(s)	431, 893
BspANI	GGCC	3 cut(s)	189, 591, 955
BspCNI	CTCAG	1 cut(s)	19
BspFNI	CGCG	1 cut(s)	372
BspHI	TCATGA	2 cut(s)	154, 1083
BspLI	GGNNCC	1 cut(s)	897
BspMAI	CTGCAG	2 cut(s)	798, 931
BspPI	GGATC	3 cut(s)	21, 94, 159
BsrDI	GCAATG	2 cut(s)	409, 850
BsrI	ACTGG	3 cut(s)	463, 503, 659
BssECI	CCNNGG	3 cut(s)	277, 351, 616
BssMI	GATC	7 cut(s)	13, 99, 151, 157, 178, 193, 834
BssSI	CACGAG	1 cut(s)	332
BssT1I	CCWWGG	3 cut(s)	277, 351, 616
Bst2BI	CACGAG	1 cut(s)	332
Bst4CI	ACNGT	3 cut(s)	533, 547, 740
BstDEI	CTNAG	2 cut(s)	27, 593
BstDSI	CCRYGG	1 cut(s)	277
BstENI	CCTNNNNNAGG	1 cut(s)	1033
BstF5I	GGATG	1 cut(s)	708
BstFNI	CGCG	1 cut(s)	372
BstH2I	RGCGCY	1 cut(s)	497
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	7 cut(s)	16, 102, 154, 160, 181, 196, 837
BstMBI	GATC	7 cut(s)	13, 99, 151, 157, 178, 193, 834
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNSI	RCATGY	1 cut(s)	918
BstSFI	CTRYAG	3 cut(s)	125, 794, 927
BstUI	CGCG	1 cut(s)	372
BstV1I	GCAGC	4 cut(s)	229, 349, 483, 714
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BsuRI	GGCC	3 cut(s)	189, 591, 955
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	708
BtsI	GCAGTG	3 cut(s)	604, 791, 924
BtsIMutI	CAGTG	3 cut(s)	604, 791, 924
CciI	TCATGA	2 cut(s)	154, 1083
CfoI	GCGC	1 cut(s)	496
Cfr13I	GGNCC	1 cut(s)	953
CseI	GACGC	1 cut(s)	333
Csp6I	GTAC	4 cut(s)	116, 364, 529, 548
CviAII	CATG	7 cut(s)	148, 155, 278, 344, 826, 915, 1084
CviQI	GTAC	4 cut(s)	116, 364, 529, 548
DdeI	CTNAG	2 cut(s)	27, 593
DpnI	GATC	7 cut(s)	15, 101, 153, 159, 180, 195, 836
DpnII	GATC	7 cut(s)	13, 99, 151, 157, 178, 193, 834
EciI	GGCGGA	1 cut(s)	446
Ecl136II	GAGCTC	1 cut(s)	967
Eco130I	CCWWGG	3 cut(s)	277, 351, 616
Eco147I	AGGCCT	2 cut(s)	189, 591
Eco24I	GRGCYC	4 cut(s)	203, 675, 900, 969
Eco47III	AGCGCT	1 cut(s)	495
Eco53kI	GAGCTC	1 cut(s)	967
Eco57I	CTGAAG	4 cut(s)	267, 382, 600, 716
Eco88I	CYCGRG	3 cut(s)	203, 551, 668
EcoICRI	GAGCTC	1 cut(s)	967
EcoNI	CCTNNNNNAGG	1 cut(s)	1033
EcoT14I	CCWWGG	3 cut(s)	277, 351, 616
EcoT38I	GRGCYC	4 cut(s)	203, 675, 900, 969
ErhI	CCWWGG	3 cut(s)	277, 351, 616
FaeI	CATG	7 cut(s)	151, 158, 281, 347, 829, 918, 1087
FaqI	GGGAC	2 cut(s)	455, 1059
FatI	CATG	7 cut(s)	147, 154, 277, 343, 825, 914, 1083
FbaI	TGATCA	1 cut(s)	193
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	4 cut(s)	243, 338, 497, 728
FokI	GGATG	1 cut(s)	695
FriOI	GRGCYC	4 cut(s)	203, 675, 900, 969
Fsp4HI	GCNGC	4 cut(s)	243, 338, 497, 728
FspBI	CTAG	3 cut(s)	470, 617, 840
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	4 cut(s)	243, 338, 497, 728
GsuI	CTGGAG	2 cut(s)	108, 486
HaeII	RGCGCY	1 cut(s)	497
HaeIII	GGCC	3 cut(s)	189, 591, 955
HapII	CCGG	1 cut(s)	428
HgaI	GACGC	1 cut(s)	333
HhaI	GCGC	1 cut(s)	496
Hin1II	CATG	7 cut(s)	151, 158, 281, 347, 829, 918, 1087
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HincII	GTYRAC	2 cut(s)	82, 781
HindII	GTYRAC	2 cut(s)	82, 781
HindIII	AAGCTT	1 cut(s)	582
HinfI	GANTC	3 cut(s)	83, 108, 1080
HpaI	GTTAAC	1 cut(s)	781
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	6 cut(s)	82, 118, 274, 391, 423, 781
Hpy188I	TCNGA	8 cut(s)	164, 198, 231, 267, 568, 580, 706, 976
Hpy188III	TCNNGA	6 cut(s)	87, 155, 332, 734, 856, 1084
Hpy8I	GTNNAC	6 cut(s)	82, 118, 274, 391, 423, 781
Hpy99I	CGWCG	1 cut(s)	327
HpyAV	CCTTC	1 cut(s)	1036
HpyCH4III	ACNGT	3 cut(s)	533, 547, 740
HpyCH4IV	ACGT	2 cut(s)	446, 783
HpyCH4V	TGCA	9 cut(s)	136, 456, 510, 692, 796, 832, 914, 929, 1064
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	2 cut(s)	27, 593
HpySE526I	ACGT	2 cut(s)	446, 783
Hsp92II	CATG	7 cut(s)	151, 158, 281, 347, 829, 918, 1087
HspAI	GCGC	1 cut(s)	494
Ksp22I	TGATCA	1 cut(s)	193
KspAI	GTTAAC	1 cut(s)	781
Kzo9I	GATC	7 cut(s)	13, 99, 151, 157, 178, 193, 834
LmnI	GCTCC	2 cut(s)	865, 895
Lsp1109I	GCAGC	4 cut(s)	229, 349, 483, 714
LweI	GCATC	2 cut(s)	297, 819
MaeI	CTAG	3 cut(s)	470, 617, 840
MaeII	ACGT	2 cut(s)	446, 783
MaeIII	GTNAC	2 cut(s)	91, 599
MalI	GATC	7 cut(s)	15, 101, 153, 159, 180, 195, 836
MboI	GATC	7 cut(s)	13, 99, 151, 157, 178, 193, 834
MboII	GAAGA	4 cut(s)	43, 103, 485, 913
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	5 cut(s)	203, 675, 870, 900, 969
MluCI	AATT	6 cut(s)	44, 75, 519, 569, 990, 1065
MlyI	GAGTC	2 cut(s)	77, 1074
MnlI	CCTC	9 cut(s)	16, 132, 201, 295, 432, 510, 798, 925, 1080
MseI	TTAA	1 cut(s)	780
MslI	CAYNNNNRTG	2 cut(s)	643, 768
MspI	CCGG	1 cut(s)	428
MvnI	CGCG	1 cut(s)	372
MwoI	GCNNNNNNNGC	1 cut(s)	248
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	7 cut(s)	13, 99, 151, 157, 178, 193, 834
NlaIII	CATG	7 cut(s)	151, 158, 281, 347, 829, 918, 1087
NlaIV	GGNNCC	1 cut(s)	897
NmuCI	GTSAC	2 cut(s)	91, 599
NspI	RCATGY	1 cut(s)	918
OliI	CACNNNNGTG	1 cut(s)	643
PagI	TCATGA	2 cut(s)	154, 1083
PceI	AGGCCT	2 cut(s)	189, 591
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	4 cut(s)	244, 339, 498, 729
PleI	GAGTC	2 cut(s)	77, 1074
PpsI	GAGTC	2 cut(s)	77, 1074
Psp124BI	GAGCTC	1 cut(s)	969
Psp1406I	AACGTT	1 cut(s)	783
PspN4I	GGNNCC	1 cut(s)	897
PspPI	GGNCC	1 cut(s)	953
PstI	CTGCAG	2 cut(s)	798, 931
PsuI	RGATCY	1 cut(s)	99
RsaI	GTAC	4 cut(s)	117, 365, 530, 549
RsaNI	GTAC	4 cut(s)	116, 364, 529, 548
RseI	CAYNNNNRTG	2 cut(s)	643, 768
SacI	GAGCTC	1 cut(s)	969
SalI	GTCGAC	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	780
SatI	GCNGC	4 cut(s)	243, 338, 497, 728
Sau3AI	GATC	7 cut(s)	13, 99, 151, 157, 178, 193, 834
Sau96I	GGNCC	1 cut(s)	953
SchI	GAGTC	2 cut(s)	77, 1074
SduI	GDGCHC	5 cut(s)	203, 675, 870, 900, 969
SfaNI	GCATC	2 cut(s)	297, 819
SfcI	CTRYAG	3 cut(s)	125, 794, 927
SmiMI	CAYNNNNRTG	2 cut(s)	643, 768
Sse9I	AATT	6 cut(s)	44, 75, 519, 569, 990, 1065
SseBI	AGGCCT	2 cut(s)	189, 591
SsiI	CCGC	2 cut(s)	431, 893
SspI	AATATT	1 cut(s)	817
SspMI	CTAG	3 cut(s)	470, 617, 840
SstI	GAGCTC	1 cut(s)	969
StuI	AGGCCT	2 cut(s)	189, 591
StyI	CCWWGG	3 cut(s)	277, 351, 616
TaaI	ACNGT	3 cut(s)	533, 547, 740
TaiI	ACGT	2 cut(s)	449, 786
TaqI	TCGA	2 cut(s)	81, 322
TasI	AATT	6 cut(s)	44, 75, 519, 569, 990, 1065
TatI	WGTACW	2 cut(s)	528, 547
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	1 cut(s)	780
Tru9I	TTAA	1 cut(s)	780
TscAI	CASTG	3 cut(s)	604, 798, 931
TseFI	GTSAC	2 cut(s)	91, 599
TseI	GCWGC	4 cut(s)	242, 337, 496, 727
Tsp45I	GTSAC	2 cut(s)	91, 599
TspDTI	ATGAA	3 cut(s)	360, 492, 752
TspRI	CASTG	3 cut(s)	604, 798, 931
XagI	CCTNNNNNAGG	1 cut(s)	1033
XapI	RAATTY	1 cut(s)	44
XceI	RCATGY	1 cut(s)	918
XmaJI	CCTAGG	1 cut(s)	616
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	3 cut(s)	470, 617, 840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.