Rmu_sc0005091.1_g000008

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005091.1
OG0005170
Physical Location & Seq
Reverse (-)
22161 .. 23016
856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005091.1_g000008.1.cds

Sequence Viewer

Length: 294 bp
atgccgggggctcttgtggttaacattggagatcttttgcagctcatatcaaatgacagattcaagagtgtcgaacacagggtactggcgaaccgtagaggtccacgagtatcgattgcaagctttttctccacaggattgttgccattaccaagactctacggaccaatcatggagttattatcagaagacaatcctccaaagtacagggagactactgttagggactatgttgcctacttccataagaaaggccttgatggcacctctgctttgtctcactttaaggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

97

Amino Acids

10.9

Weight (kDa)

9.69

Isoelectric Point (pI)

25.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 263
AfaI GTAC 2 cut(s) 84, 206
AgsI TTSAA 1 cut(s) 64
AluBI AGCT 2 cut(s) 43, 123
AluI AGCT 2 cut(s) 43, 123
Alw26I GTCTC 2 cut(s) 206, 282
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 40
AspS9I GGNCC 2 cut(s) 101, 164
AsuC2I CCSGG 1 cut(s) 6
AvaII GGWCC 2 cut(s) 101, 164
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 13
BauI CACGAG 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 195
BbvI GCAGC 1 cut(s) 52
BccI CCATC 1 cut(s) 254
BcnI CCSGG 1 cut(s) 6
BcoDI GTCTC 2 cut(s) 206, 282
BglI GCCNNNNNGGC 1 cut(s) 261
BglII AGATCT 1 cut(s) 31
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 6
Bme18I GGWCC 2 cut(s) 101, 164
BmgT120I GGNCC 2 cut(s) 101, 164
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 195
BpuMI CCSGG 1 cut(s) 6
Bsa29I ATCGAT 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 90
BseCI ATCGAT 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 5
BseNI ACTGG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 52
BshFI GGCC 1 cut(s) 255
BshNI GGYRCC 1 cut(s) 263
BshVI ATCGAT 1 cut(s) 113
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 239
BsmAI GTCTC 2 cut(s) 206, 282
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 1 cut(s) 31
BspANI GGCC 1 cut(s) 255
BspDI ATCGAT 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 265
BspT107I GGYRCC 1 cut(s) 263
BsrI ACTGG 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 1 cut(s) 31
BssSI CACGAG 1 cut(s) 105
Bst2BI CACGAG 1 cut(s) 105
Bst4CI ACNGT 2 cut(s) 95, 220
BstC8I GCNNGC 1 cut(s) 121
BstKTI GATC 1 cut(s) 34
BstMAI GTCTC 2 cut(s) 206, 282
BstMBI GATC 1 cut(s) 31
BstMWI GCNNNNNNNGC 1 cut(s) 261
BstSCI CCNGG 1 cut(s) 4
BstV1I GCAGC 1 cut(s) 52
BstV2I GAAGAC 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
Bsu15I ATCGAT 1 cut(s) 113
BsuRI GGCC 1 cut(s) 255
BsuTUI ATCGAT 1 cut(s) 113
Cac8I GCNNGC 1 cut(s) 121
Cfr13I GGNCC 2 cut(s) 101, 164
ClaI ATCGAT 1 cut(s) 113
Csp6I GTAC 2 cut(s) 83, 205
CviAII CATG 1 cut(s) 172
CviJI RGCY 4 cut(s) 11, 43, 123, 255
CviKI_1 RGCY 4 cut(s) 11, 43, 123, 255
CviQI GTAC 2 cut(s) 83, 205
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
Eco147I AGGCCT 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 13
Eco47I GGWCC 2 cut(s) 101, 164
EcoT38I GRGCYC 1 cut(s) 13
FaeI CATG 1 cut(s) 175
FaiI YATR 4 cut(s) 47, 173, 231, 246
FaqI GGGAC 1 cut(s) 239
FatI CATG 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 41
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 41
HaeIII GGCC 1 cut(s) 255
HapII CCGG 1 cut(s) 5
Hin1II CATG 1 cut(s) 175
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 121
HinfI GANTC 2 cut(s) 60, 156
HpaI GTTAAC 1 cut(s) 22
HpaII CCGG 1 cut(s) 5
Hpy166II GTNNAC 2 cut(s) 22, 104
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 2 cut(s) 22, 104
HpyCH4III ACNGT 2 cut(s) 95, 220
HpyCH4V TGCA 2 cut(s) 40, 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 261
Hsp92II CATG 1 cut(s) 175
KspAI GTTAAC 1 cut(s) 22
Kzo9I GATC 1 cut(s) 31
LpnPI CCDG 5 cut(s) 18, 64, 71, 120, 193
Lsp1109I GCAGC 1 cut(s) 52
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 1 cut(s) 200
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 13
MlyI GAGTC 1 cut(s) 150
MnlI CCTC 3 cut(s) 92, 207, 277
MseI TTAA 2 cut(s) 21, 285
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 261
NciI CCSGG 1 cut(s) 6
NdeII GATC 1 cut(s) 31
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 1 cut(s) 265
PceI AGGCCT 1 cut(s) 255
PfeI GAWTC 1 cut(s) 60
PkrI GCNGC 1 cut(s) 42
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 265
PspPI GGNCC 2 cut(s) 101, 164
PsrI GAACNNNNNNTAC 2 cut(s) 66, 98
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 2 cut(s) 84, 206
RsaNI GTAC 2 cut(s) 83, 205
SaqAI TTAA 2 cut(s) 21, 285
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 1 cut(s) 31
Sau96I GGNCC 2 cut(s) 101, 164
SchI GAGTC 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 6
SduI GDGCHC 1 cut(s) 13
SetI ASST 5 cut(s) 45, 103, 125, 269, 291
SinI GGWCC 2 cut(s) 101, 164
SseBI AGGCCT 1 cut(s) 255
StuI AGGCCT 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 4
TaaI ACNGT 2 cut(s) 95, 220
TaqI TCGA 2 cut(s) 72, 113
TatI WGTACW 1 cut(s) 204
TfiI GAWTC 1 cut(s) 60
Tru1I TTAA 2 cut(s) 21, 285
Tru9I TTAA 2 cut(s) 21, 285
TseI GCWGC 1 cut(s) 40
TspGWI ACGGA 1 cut(s) 177
VpaK11BI GGWCC 2 cut(s) 101, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.