Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005170

Physical Location & Seq

Genomic Coordinates Reverse (-)

50921226 .. 50923380

Gene Structure 2155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG308600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGAAGCCGTGGGTCATAGTGAGGCCGAGAAGAGGGTGAAAGAATTTCATGAATCCAAAGCTGGTGTCAAAGGAATTGTCCACTCTGGATTGACCAAGATCCCACCAATCTTCGTACACCCTCCAGAGGAGTTGCAACGAAACAACATGAATCATGATTTCCGAGTTCCAATGATTGATCTCAAGGGCCTTGATCAGAGCACCGAGAGGCGAAAAGAAGTCATCAATGAGATGAGCAAAGCAGCTGAAGCTTGGGGATTCTTTCAGATAGTGAACCATGGAGTTCCACTTGAAGTTATGGAGGAGGTGCTGAAAAGTGTTCGACGATTTCACGAGCAGCCCCATGAAACCAAGGTGGAGTGGTACTCGCGCGATTTCAAGAAGAAGGCGTTCAACTACTTCAGCAACGGAGATTTGAAGGCGTCGACTCAGGCTGGCTGGAGGGACAGTTTCTCCTGGCAGCTGCAGTTCCCAGAAGATGAAGGCAACTCTCAAGCACTGCCTCAAGTCTGCAGAAGGGAAATTGTCGAGTACGGTAAGCACATGACTCAACTACAAGAGAAGCTCTCTGAATTATTGTCCGAAGCTTTAGGTCTGAGCACTGACTACCTTTCAAGCCTAGGGTGCTTTAAGTCGACATCACTGGTTGGCCACTATTACCCGGTTTGCCCAGAGCCCCATCTAACTTTAGGCGCAAGCAAGCACTCGGACATCTCCTTTCTCACTCTGCTCCTTCAAGACAGTGTCGGTGGCCTGCAAGTGCTTCATCAAAATGTTTGGGTGGATGTGCCACCAGTGCAAGGAGCTTTGGTAGCAAATCTAGGCGACTTGATGCAGATCACTAGTAATGACAAGTTCAAGAGTGTGGAGCACAGAGTTTTGGCAACCAGGACCGCGGAACCCCGAACATCAGTTGCATGTTTTTTCAGTGCAGAGGACAAGCTCAAACCATTTGGGCCGTTCAAGGAGCTTGTTTCCGAAACCCATCCCCCAATTTACAGAGACAATATCAGTTTTGGAGAATACATGGCATATTATAGGCTCAAGGGGCAAGATGGAAACTCTTCTCTGCCTCGGTTTAGACTCGTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

364

Amino Acids

41.37

Weight (kDa)

6.36

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	56 - 162	9e-23	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	215 - 310	6.2e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005170)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03211 FvH4_2g21890
malus_domestica	MD05G1014100.v1.1
prunus_persica	Prupe.8G226600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0392041 RchiOBHm_Chr6g0288791
rosa_laevigata	RLG00000009843 RLG00000012366 RLG00000012368 RLG00000012372 RLG00000012377 RLG00000012378 RLG00000012380
rosa_multiflora	Rmu_co8406507.1_g000001 Rmu_sc0004928.1_g000001 Rmu_sc0005091.1_g000008 Rmu_sc0005314.1_g000026
rosa_roxburghii	Rroxscaffold_7G00179880 Rroxscaffold_7G00179900
rosa_rugosa	Rorug04G0006500 Rorug06G0198100 Rorug06G0198200 Rorug06G0198300
rosa_samantha	Rh4CG043100 Rh6AG045200 Rh6BG315200 Rh6BG315400 Rh6CG322900 Rh6DG308600
rosa_wichuraiana	Rw6G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	425, 635
AccII	CGCG	3 cut(s)	370, 372, 896
AciI	CCGC	2 cut(s)	894, 896
AclWI	GGATC	1 cut(s)	94
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	2 cut(s)	267, 385
AcyI	GRCGYC	1 cut(s)	422
AfaI	GTAC	3 cut(s)	117, 365, 533
AfiI	CCNNNNNNNGG	3 cut(s)	33, 127, 800
AgsI	TTSAA	8 cut(s)	293, 379, 394, 418, 615, 737, 859, 964
AhlI	ACTAGT	1 cut(s)	842
AjnI	CCWGG	2 cut(s)	455, 887
AluBI	AGCT	9 cut(s)	62, 245, 251, 463, 565, 587, 806, 943, 970
AluI	AGCT	9 cut(s)	62, 245, 251, 463, 565, 587, 806, 943, 970
Alw21I	GWGCWC	3 cut(s)	203, 602, 873
Alw26I	GTCTC	1 cut(s)	996
AlwI	GGATC	1 cut(s)	94
AoxI	GGCC	5 cut(s)	24, 187, 649, 751, 956
ApeKI	GCWGC	4 cut(s)	242, 337, 460, 463
ApoI	RAATTY	1 cut(s)	44
ArsI	GACNNNNNNTTYG	4 cut(s)	51, 63, 83, 95
Asp700I	GAANNNNTTC	2 cut(s)	389, 1063
AspA2I	CCTAGG	1 cut(s)	619
AspLEI	GCGC	2 cut(s)	372, 695
AspS9I	GGNCC	3 cut(s)	187, 891, 956
AsuC2I	CCSGG	1 cut(s)	662
AsuHPI	GGTGA	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	891
AvrII	CCTAGG	1 cut(s)	619
BalI	TGGCCA	1 cut(s)	651
BanII	GRGCYC	1 cut(s)	678
BauI	CACGAG	2 cut(s)	332, 1085
Bbv12I	GWGCWC	3 cut(s)	203, 602, 873
BbvI	GCAGC	4 cut(s)	254, 349, 450, 472
BccI	CCATC	3 cut(s)	687, 993, 1049
BceAI	ACGGC	1 cut(s)	943
BciT130I	CCWGG	2 cut(s)	457, 889
BclI	TGATCA	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	662
BcoDI	GTCTC	1 cut(s)	996
BcuI	ACTAGT	1 cut(s)	842
BfaI	CTAG	3 cut(s)	620, 821, 843
BfmI	CTRYAG	2 cut(s)	464, 511
BisI	GCNGC	4 cut(s)	243, 338, 461, 464
BlnI	CCTAGG	1 cut(s)	619
BlsI	GCNGC	4 cut(s)	244, 339, 462, 465
Bme1390I	CCNGG	3 cut(s)	457, 662, 889
Bme18I	GGWCC	1 cut(s)	891
BmgT120I	GGNCC	3 cut(s)	187, 891, 956
BmiI	GGNNCC	1 cut(s)	900
BmrFI	CCNGG	3 cut(s)	457, 662, 889
BmsI	GCATC	1 cut(s)	822
BplI	GAGNNNNNCTC	4 cut(s)	350, 382, 551, 583
BpmI	CTGGAG	2 cut(s)	108, 460
BpuEI	CTTGAG	4 cut(s)	167, 477, 489, 1028
BpuMI	CCSGG	1 cut(s)	662
BsaBI	GATNNNNATC	1 cut(s)	836
BsaHI	GRCGYC	1 cut(s)	422
BsaJI	CCNNGG	6 cut(s)	9, 277, 351, 619, 894, 1073
BsaXI	ACNNNNNCTCC	6 cut(s)	433, 437, 463, 467, 795, 825
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 127, 800
Bse1I	ACTGG	2 cut(s)	648, 794
Bse8I	GATNNNNATC	1 cut(s)	836
BseBI	CCWGG	2 cut(s)	457, 889
BseDI	CCNNGG	6 cut(s)	9, 277, 351, 619, 894, 1073
BseGI	GGATG	2 cut(s)	790, 985
BseJI	GATNNNNATC	1 cut(s)	836
BseLI	CCNNNNNNNGG	3 cut(s)	33, 127, 800
BseMII	CTCAG	2 cut(s)	443, 587
BseNI	ACTGG	2 cut(s)	648, 794
BseRI	GAGGAG	2 cut(s)	143, 317
BseXI	GCAGC	4 cut(s)	254, 349, 450, 472
BsgI	GTGCAG	1 cut(s)	951
Bsh1236I	CGCG	3 cut(s)	370, 372, 896
BshFI	GGCC	5 cut(s)	26, 189, 651, 753, 958
BsiHKAI	GWGCWC	3 cut(s)	203, 602, 873
BsiSI	CCGG	1 cut(s)	662
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	3 cut(s)	33, 127, 800
BsmAI	GTCTC	1 cut(s)	996
BsmFI	GGGAC	1 cut(s)	458
BsnI	GGCC	5 cut(s)	26, 189, 651, 753, 958
Bsp1286I	GDGCHC	4 cut(s)	203, 602, 678, 873
Bsp143I	GATC	4 cut(s)	99, 178, 193, 837
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	2 cut(s)	894, 896
BspANI	GGCC	5 cut(s)	26, 189, 651, 753, 958
BspCNI	CTCAG	2 cut(s)	442, 588
BspFNI	CGCG	3 cut(s)	370, 372, 896
BspHI	TCATGA	2 cut(s)	49, 154
BspLI	GGNNCC	1 cut(s)	900
BspMAI	CTGCAG	2 cut(s)	468, 515
BspPI	GGATC	1 cut(s)	94
BsrI	ACTGG	2 cut(s)	648, 794
BssECI	CCNNGG	6 cut(s)	9, 277, 351, 619, 894, 1073
BssMI	GATC	4 cut(s)	99, 178, 193, 837
BssNI	GRCGYC	1 cut(s)	422
BssSI	CACGAG	2 cut(s)	332, 1085
BssT1I	CCWWGG	3 cut(s)	277, 351, 619
Bst2BI	CACGAG	2 cut(s)	332, 1085
Bst2UI	CCWGG	2 cut(s)	457, 889
Bst4CI	ACNGT	3 cut(s)	449, 536, 743
Bst6I	CTCTTC	2 cut(s)	26, 1069
BstACI	GRCGYC	1 cut(s)	422
BstC8I	GCNNGC	4 cut(s)	436, 697, 701, 755
BstDEI	CTNAG	2 cut(s)	429, 596
BstDSI	CCRYGG	3 cut(s)	9, 277, 894
BstF5I	GGATG	2 cut(s)	790, 985
BstFNI	CGCG	3 cut(s)	370, 372, 896
BstHHI	GCGC	2 cut(s)	372, 695
BstKTI	GATC	4 cut(s)	102, 181, 196, 840
BstMAI	GTCTC	1 cut(s)	996
BstMBI	GATC	4 cut(s)	99, 178, 193, 837
BstMWI	GCNNNNNNNGC	5 cut(s)	248, 624, 796, 812, 1048
BstNI	CCWGG	2 cut(s)	457, 889
BstNSI	RCATGY	1 cut(s)	921
BstSCI	CCNGG	3 cut(s)	455, 660, 887
BstSFI	CTRYAG	2 cut(s)	464, 511
BstUI	CGCG	3 cut(s)	370, 372, 896
BstV1I	GCAGC	4 cut(s)	254, 349, 450, 472
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BsuRI	GGCC	5 cut(s)	26, 189, 651, 753, 958
BtgI	CCRYGG	3 cut(s)	9, 277, 894
BtsCI	GGATG	2 cut(s)	790, 985
BtsI	GCAGTG	1 cut(s)	497
BtsIMutI	CAGTG	6 cut(s)	497, 600, 641, 748, 801, 934
Cac8I	GCNNGC	4 cut(s)	436, 697, 701, 755
CciI	TCATGA	2 cut(s)	49, 154
CfoI	GCGC	2 cut(s)	372, 695
Cfr13I	GGNCC	3 cut(s)	187, 891, 956
Cfr42I	CCGCGG	1 cut(s)	897
CseI	GACGC	1 cut(s)	411
Csp6I	GTAC	3 cut(s)	116, 364, 532
CviAII	CATG	8 cut(s)	50, 148, 155, 278, 344, 544, 918, 1027
CviQI	GTAC	3 cut(s)	116, 364, 532
DdeI	CTNAG	2 cut(s)	429, 596
DpnI	GATC	4 cut(s)	101, 180, 195, 839
DpnII	GATC	4 cut(s)	99, 178, 193, 837
EaeI	YGGCCR	1 cut(s)	649
Eam1104I	CTCTTC	2 cut(s)	26, 1069
EarI	CTCTTC	2 cut(s)	26, 1069
Eco130I	CCWWGG	3 cut(s)	277, 351, 619
Eco24I	GRGCYC	1 cut(s)	678
Eco47I	GGWCC	1 cut(s)	891
Eco57I	CTGAAG	2 cut(s)	267, 385
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	455, 887
EcoT14I	CCWWGG	3 cut(s)	277, 351, 619
EcoT38I	GRGCYC	1 cut(s)	678
ErhI	CCWWGG	3 cut(s)	277, 351, 619
FaeI	CATG	8 cut(s)	53, 151, 158, 281, 347, 547, 921, 1030
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	8 cut(s)	49, 147, 154, 277, 343, 543, 917, 1026
FbaI	TGATCA	1 cut(s)	193
FblI	GTMKAC	2 cut(s)	425, 635
Fnu4HI	GCNGC	4 cut(s)	243, 338, 461, 464
FokI	GGATG	2 cut(s)	797, 972
FriOI	GRGCYC	1 cut(s)	678
Fsp4HI	GCNGC	4 cut(s)	243, 338, 461, 464
FspBI	CTAG	3 cut(s)	620, 821, 843
GlaI	GCGC	2 cut(s)	371, 694
GluI	GCNGC	4 cut(s)	243, 338, 461, 464
GsuI	CTGGAG	2 cut(s)	108, 460
HaeIII	GGCC	5 cut(s)	26, 189, 651, 753, 958
HapII	CCGG	1 cut(s)	662
HgaI	GACGC	1 cut(s)	411
HhaI	GCGC	2 cut(s)	372, 695
Hin1I	GRCGYC	1 cut(s)	422
Hin1II	CATG	8 cut(s)	53, 151, 158, 281, 347, 547, 921, 1030
Hin6I	GCGC	2 cut(s)	370, 693
HinP1I	GCGC	2 cut(s)	370, 693
HincII	GTYRAC	2 cut(s)	426, 636
HindII	GTYRAC	2 cut(s)	426, 636
HindIII	AAGCTT	2 cut(s)	249, 585
HinfI	GANTC	6 cut(s)	53, 151, 258, 427, 547, 1083
HpaII	CCGG	1 cut(s)	662
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	5 cut(s)	82, 118, 274, 426, 636
Hpy188I	TCNGA	8 cut(s)	164, 198, 267, 571, 583, 597, 709, 979
Hpy188III	TCNNGA	8 cut(s)	50, 87, 125, 155, 332, 379, 737, 859
Hpy8I	GTNNAC	5 cut(s)	82, 118, 274, 426, 636
Hpy99I	CGWCG	2 cut(s)	327, 427
HpyAV	CCTTC	5 cut(s)	379, 412, 476, 510, 743
HpyCH4III	ACNGT	3 cut(s)	449, 536, 743
HpyCH4V	TGCA	9 cut(s)	136, 466, 513, 757, 799, 835, 917, 932, 1090
HpyF10VI	GCNNNNNNNGC	5 cut(s)	248, 624, 796, 812, 1048
HpyF3I	CTNAG	2 cut(s)	429, 596
Hsp92I	GRCGYC	1 cut(s)	422
Hsp92II	CATG	8 cut(s)	53, 151, 158, 281, 347, 547, 921, 1030
HspAI	GCGC	2 cut(s)	370, 693
Ksp22I	TGATCA	1 cut(s)	193
KspI	CCGCGG	1 cut(s)	897
Kzo9I	GATC	4 cut(s)	99, 178, 193, 837
LmnI	GCTCC	4 cut(s)	735, 803, 868, 967
Lsp1109I	GCAGC	4 cut(s)	254, 349, 450, 472
LweI	GCATC	1 cut(s)	822
MaeI	CTAG	3 cut(s)	620, 821, 843
MalI	GATC	4 cut(s)	101, 180, 195, 839
MboI	GATC	4 cut(s)	99, 178, 193, 837
MboII	GAAGA	5 cut(s)	43, 103, 394, 488, 1056
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	4 cut(s)	203, 602, 678, 873
MlsI	TGGCCA	1 cut(s)	651
MluCI	AATT	5 cut(s)	44, 75, 522, 572, 993
MluNI	TGGCCA	1 cut(s)	651
MlyI	GAGTC	3 cut(s)	421, 541, 1077
Mox20I	TGGCCA	1 cut(s)	651
MroXI	GAANNNNTTC	2 cut(s)	389, 1063
MscI	TGGCCA	1 cut(s)	651
MseI	TTAA	2 cut(s)	630, 1093
MslI	CAYNNNNRTG	1 cut(s)	771
Msp20I	TGGCCA	1 cut(s)	651
MspA1I	CMGCKG	3 cut(s)	245, 463, 896
MspI	CCGG	1 cut(s)	662
MspR9I	CCNGG	3 cut(s)	457, 662, 889
MvaI	CCWGG	2 cut(s)	457, 889
MvnI	CGCG	3 cut(s)	370, 372, 896
MwoI	GCNNNNNNNGC	5 cut(s)	248, 624, 796, 812, 1048
NciI	CCSGG	1 cut(s)	662
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	4 cut(s)	99, 178, 193, 837
NlaIII	CATG	8 cut(s)	53, 151, 158, 281, 347, 547, 921, 1030
NlaIV	GGNNCC	1 cut(s)	900
NmeAIII	GCCGAG	1 cut(s)	52
NspI	RCATGY	1 cut(s)	921
PagI	TCATGA	2 cut(s)	49, 154
PdmI	GAANNNNTTC	2 cut(s)	389, 1063
PfeI	GAWTC	3 cut(s)	53, 151, 258
PflFI	GACNNNGTC	1 cut(s)	743
PkrI	GCNGC	4 cut(s)	244, 339, 462, 465
PleI	GAGTC	3 cut(s)	421, 541, 1077
PpsI	GAGTC	3 cut(s)	421, 541, 1077
Psp6I	CCWGG	2 cut(s)	455, 887
PspGI	CCWGG	2 cut(s)	455, 887
PspN4I	GGNNCC	1 cut(s)	900
PspPI	GGNCC	3 cut(s)	187, 891, 956
PstI	CTGCAG	2 cut(s)	468, 515
PsuI	RGATCY	1 cut(s)	99
PsyI	GACNNNGTC	1 cut(s)	743
PvuII	CAGCTG	2 cut(s)	245, 463
RsaI	GTAC	3 cut(s)	117, 365, 533
RsaNI	GTAC	3 cut(s)	116, 364, 532
RseI	CAYNNNNRTG	1 cut(s)	771
SacII	CCGCGG	1 cut(s)	897
SalI	GTCGAC	2 cut(s)	424, 634
SaqAI	TTAA	2 cut(s)	630, 1093
SatI	GCNGC	4 cut(s)	243, 338, 461, 464
Sau3AI	GATC	4 cut(s)	99, 178, 193, 837
Sau96I	GGNCC	3 cut(s)	187, 891, 956
SchI	GAGTC	3 cut(s)	421, 541, 1077
ScrFI	CCNGG	3 cut(s)	457, 662, 889
SduI	GDGCHC	4 cut(s)	203, 602, 678, 873
SfaNI	GCATC	1 cut(s)	822
SfcI	CTRYAG	2 cut(s)	464, 511
Sfr303I	CCGCGG	1 cut(s)	897
SgrBI	CCGCGG	1 cut(s)	897
SinI	GGWCC	1 cut(s)	891
SmiMI	CAYNNNNRTG	1 cut(s)	771
SmlI	CTYRAG	4 cut(s)	182, 492, 504, 1043
SmoI	CTYRAG	4 cut(s)	182, 492, 504, 1043
SpeI	ACTAGT	1 cut(s)	842
Sse9I	AATT	5 cut(s)	44, 75, 522, 572, 993
SsiI	CCGC	2 cut(s)	894, 896
SspMI	CTAG	3 cut(s)	620, 821, 843
StyD4I	CCNGG	3 cut(s)	455, 660, 887
StyI	CCWWGG	3 cut(s)	277, 351, 619
TaaI	ACNGT	3 cut(s)	449, 536, 743
TaqI	TCGA	4 cut(s)	322, 425, 528, 635
TasI	AATT	5 cut(s)	44, 75, 522, 572, 993
TfiI	GAWTC	3 cut(s)	53, 151, 258
Tru1I	TTAA	2 cut(s)	630, 1093
Tru9I	TTAA	2 cut(s)	630, 1093
TscAI	CASTG	6 cut(s)	504, 607, 648, 748, 801, 934
TseI	GCWGC	4 cut(s)	242, 337, 460, 463
TspDTI	ATGAA	6 cut(s)	38, 66, 164, 360, 495, 755
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	6 cut(s)	504, 607, 648, 748, 801, 934
Tth111I	GACNNNGTC	1 cut(s)	743
VpaK11BI	GGWCC	1 cut(s)	891
XapI	RAATTY	1 cut(s)	44
XceI	RCATGY	1 cut(s)	921
XmaJI	CCTAGG	1 cut(s)	619
XmiI	GTMKAC	2 cut(s)	425, 635
XmnI	GAANNNNTTC	2 cut(s)	389, 1063
XspI	CTAG	3 cut(s)	620, 821, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.