Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8406507.1

Orthogroup ID

OG0005170

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 456

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8406507.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

cttctatcaaatgacagattcaagagtgtagagcacagggtactggcaaaccgtaaaggtccaagaatatcagttgcaagctttttcagcacaggaatgctgccatcgacaaagctctacagaccaatcaaggagctattatcagaagacaatcctccaaagtacagggagactactgttagggactatgttgcctacttcaatgagaaaggccttgatggtacctctgctttgtctcattttaatctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

83

Amino Acids

9.49

Weight (kDa)

9.63

Isoelectric Point (pI)

7.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005170)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03211 FvH4_2g21890
malus_domestica	MD05G1014100.v1.1
prunus_persica	Prupe.8G226600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0392041 RchiOBHm_Chr6g0288791
rosa_laevigata	RLG00000009843 RLG00000012366 RLG00000012368 RLG00000012372 RLG00000012377 RLG00000012378 RLG00000012380
rosa_multiflora	Rmu_co8406507.1_g000001 Rmu_sc0004928.1_g000001 Rmu_sc0005091.1_g000008 Rmu_sc0005314.1_g000026
rosa_roxburghii	Rroxscaffold_7G00179880 Rroxscaffold_7G00179900
rosa_rugosa	Rorug04G0006500 Rorug06G0198100 Rorug06G0198200 Rorug06G0198300
rosa_samantha	Rh4CG043100 Rh6AG045200 Rh6BG315200 Rh6BG315400 Rh6CG322900 Rh6DG308600
rosa_wichuraiana	Rw6G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	221
AccB1I	GGYRCC	1 cut(s)	221
AfaI	GTAC	3 cut(s)	42, 164, 223
AgsI	TTSAA	2 cut(s)	22, 202
AluBI	AGCT	3 cut(s)	81, 115, 136
AluI	AGCT	3 cut(s)	81, 115, 136
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	2 cut(s)	164, 240
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	100
Asp718I	GGTACC	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	2 cut(s)	112, 212
BcoDI	GTCTC	2 cut(s)	164, 240
BfmI	CTRYAG	1 cut(s)	118
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	153
Bse1I	ACTGG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	87
BshFI	GGCC	1 cut(s)	213
BshNI	GGYRCC	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	197
BsmAI	GTCTC	2 cut(s)	164, 240
BsmFI	GGGAC	1 cut(s)	197
BsmI	GAATGC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	36
BspANI	GGCC	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	223
BspT107I	GGYRCC	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	48
Bst4CI	ACNGT	2 cut(s)	53, 178
BstC8I	GCNNGC	1 cut(s)	79
BstMAI	GTCTC	2 cut(s)	164, 240
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BstSFI	CTRYAG	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	87
BstV2I	GAAGAC	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	59
Csp6I	GTAC	3 cut(s)	41, 163, 222
CviJI	RGCY	4 cut(s)	81, 115, 136, 213
CviKI_1	RGCY	4 cut(s)	81, 115, 136, 213
CviQI	GTAC	3 cut(s)	41, 163, 222
Eco147I	AGGCCT	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	59
FaiI	YATR	1 cut(s)	189
FaqI	GGGAC	1 cut(s)	197
Fnu4HI	GCNGC	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	101
GluI	GCNGC	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	213
HindIII	AAGCTT	1 cut(s)	79
HinfI	GANTC	1 cut(s)	18
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	1 cut(s)	22
HpyCH4III	ACNGT	2 cut(s)	53, 178
HpyCH4V	TGCA	1 cut(s)	77
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
KpnI	GGTACC	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	4 cut(s)	22, 29, 78, 151
Lsp1109I	GCAGC	1 cut(s)	87
MboII	GAAGA	1 cut(s)	158
MhlI	GDGCHC	1 cut(s)	36
MnlI	CCTC	2 cut(s)	165, 235
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	1 cut(s)	95
Mva1269I	GAATGC	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	87
NlaIV	GGNNCC	1 cut(s)	223
PceI	AGGCCT	1 cut(s)	213
PctI	GAATGC	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	59
RsaI	GTAC	3 cut(s)	42, 164, 223
RsaNI	GTAC	3 cut(s)	41, 163, 222
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	1 cut(s)	101
Sau96I	GGNCC	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	5 cut(s)	61, 83, 117, 138, 227
SfcI	CTRYAG	1 cut(s)	118
SgeI	CNNG	9 cut(s)	34, 49, 56, 75, 90, 105, 142, 178, 227
SinI	GGWCC	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	95
SseBI	AGGCCT	1 cut(s)	213
StuI	AGGCCT	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	53, 178
TaqI	TCGA	1 cut(s)	107
TatI	WGTACW	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TseI	GCWGC	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.