Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011519

Physical Location & Seq

Genomic Coordinates Reverse (-)

4952888 .. 4954185

Gene Structure 1298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05971.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAAGAACAAACTCTTTGACACACCTTTCAATTGCGAATTCAACCCATTCATTTACCGGAACATAGCAGTATCCAAGGTTGGCTCGAATCCTCAACTTGTCCAAGTCCCTCTGATCCCAACATCGTCTGAGAGAGTGGCGCAGGAAACTGAGGAAACGTCGAGGTTCGCTATAGCATTCCTCGTCGAAATCGATAACAGGGAAGGAAGGCCAAAGGGATCTCCACTGCTGCGAAACGGCGGTTGCCTCAAAGGCGTCTTTGACCGGAAGGAAGGAGAGGATTTTTTCGATGACGTTGTCAGTAGTGGAAAGACGTTCGGGCCACCCCACATTTTAGCGATAGTTTGGGTCGAGGGGACCGGAGGGCCCAATGTTGACATTTGGTTTTTGCACGTTGTGGTGGACCCCTCCTTTCAAGGAATCAGGTTAGGCCCGCCTAGAGAACTCGACGGCGACGAAGATCTTATTGAGATGATCGAGGTCGACGGTGTTGTGGTGGAGAAGGAAGTCGCGGGAGTCGAGGTCCCAGTCGGAAATGGGTGTTTACAGCAGTGGACGTGGTGCAGAAGGGTGGTTTTCAAGTGCACCGTGGTGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

200

Amino Acids

22.13

Weight (kDa)

4.88

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05971 FvH4_5g36542
rosa_multiflora	Rmu_sc0000239.1_g000102 Rmu_sc0001625.1_g000001 Rmu_sc0002231.1_g000005 Rmu_sc0002895.1_g000015 Rmu_sc0006475.1_g000013 Rmu_sc0014815.1_g000005
rosa_roxburghii	Rroxscaffold_7G00195640
rosa_rugosa	Rorug04G0231200 Rorug06G0166800
rosa_samantha	Rh2AG509200 Rh2AG509500 Rh2BG520600 Rh2BG520700 Rh4BG442100 Rh5BG389700 Rh6CG192000 Rh6CG198800
rosa_wichuraiana	Rw6G016360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	1 cut(s)	512
AciI	CCGC	3 cut(s)	240, 434, 512
AclWI	GGATC	2 cut(s)	109, 226
AcsI	RAATTY	1 cut(s)	38
AcyI	GRCGYC	1 cut(s)	255
AdeI	CACNNNGTG	1 cut(s)	397
AgsI	TTSAA	4 cut(s)	31, 43, 416, 580
AjiI	CACGTC	1 cut(s)	558
AleI	CACNNNNGTG	1 cut(s)	590
Alw21I	GWGCWC	2 cut(s)	587, 597
Alw44I	GTGCAC	2 cut(s)	583, 593
AlwI	GGATC	2 cut(s)	109, 226
AoxI	GGCC	4 cut(s)	209, 320, 365, 430
ApaI	GGGCCC	1 cut(s)	369
ApaLI	GTGCAC	2 cut(s)	583, 593
ApeKI	GCWGC	1 cut(s)	229
ApoI	RAATTY	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	7 cut(s)	320, 357, 365, 366, 403, 431, 523
AvaII	GGWCC	3 cut(s)	357, 403, 523
BaeGI	GKGCMC	3 cut(s)	369, 587, 597
BanII	GRGCYC	1 cut(s)	369
Bbv12I	GWGCWC	2 cut(s)	587, 597
BbvI	GCAGC	1 cut(s)	216
BceAI	ACGGC	2 cut(s)	253, 466
BciVI	GTATCC	1 cut(s)	82
BfaI	CTAG	1 cut(s)	438
BfmI	CTRYAG	1 cut(s)	171
BfuI	GTATCC	1 cut(s)	82
BglI	GCCNNNNNGGC	1 cut(s)	252
BglII	AGATCT	1 cut(s)	460
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
Bme18I	GGWCC	3 cut(s)	357, 403, 523
BmgBI	CACGTC	1 cut(s)	558
BmgT120I	GGNCC	7 cut(s)	320, 357, 365, 366, 403, 431, 523
BmiI	GGNNCC	4 cut(s)	358, 367, 405, 525
BmrI	ACTGGG	1 cut(s)	521
BmuI	ACTGGG	1 cut(s)	521
Bsa29I	ATCGAT	1 cut(s)	192
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	75, 588
BsaWI	WCCGGW	3 cut(s)	57, 264, 359
BsaXI	ACNNNNNCTCC	2 cut(s)	507, 537
Bse1I	ACTGG	1 cut(s)	527
BseCI	ATCGAT	1 cut(s)	192
BseDI	CCNNGG	2 cut(s)	75, 588
BseMII	CTCAG	2 cut(s)	120, 141
BseNI	ACTGG	1 cut(s)	527
BseSI	GKGCMC	3 cut(s)	369, 587, 597
BseXI	GCAGC	1 cut(s)	216
BsgI	GTGCAG	1 cut(s)	583
Bsh1236I	CGCG	1 cut(s)	512
BshFI	GGCC	4 cut(s)	211, 322, 367, 432
BshVI	ATCGAT	1 cut(s)	192
BsiHKAI	GWGCWC	2 cut(s)	587, 597
BsiSI	CCGG	3 cut(s)	58, 265, 360
BslFI	GGGAC	3 cut(s)	92, 370, 509
BsmFI	GGGAC	3 cut(s)	92, 370, 509
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	4 cut(s)	211, 322, 367, 432
Bsp120I	GGGCCC	1 cut(s)	365
Bsp1286I	GDGCHC	3 cut(s)	369, 587, 597
Bsp143I	GATC	4 cut(s)	114, 218, 460, 474
BspACI	CCGC	3 cut(s)	240, 434, 512
BspANI	GGCC	4 cut(s)	211, 322, 367, 432
BspCNI	CTCAG	2 cut(s)	121, 142
BspDI	ATCGAT	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	512
BspLI	GGNNCC	4 cut(s)	358, 367, 405, 525
BspPI	GGATC	2 cut(s)	109, 226
BsrI	ACTGG	1 cut(s)	527
BssECI	CCNNGG	2 cut(s)	75, 588
BssMI	GATC	4 cut(s)	114, 218, 460, 474
BssNI	GRCGYC	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	75
Bst4CI	ACNGT	2 cut(s)	488, 589
BstACI	GRCGYC	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	434
BstDEI	CTNAG	2 cut(s)	129, 150
BstDSI	CCRYGG	1 cut(s)	588
BstFNI	CGCG	1 cut(s)	512
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	4 cut(s)	117, 221, 463, 477
BstMBI	GATC	4 cut(s)	114, 218, 460, 474
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstSFI	CTRYAG	1 cut(s)	171
BstSLI	GKGCMC	3 cut(s)	369, 587, 597
BstUI	CGCG	1 cut(s)	512
BstV1I	GCAGC	1 cut(s)	216
BstX2I	RGATCY	2 cut(s)	218, 460
BstYI	RGATCY	2 cut(s)	218, 460
Bsu15I	ATCGAT	1 cut(s)	192
BsuI	GTATCC	1 cut(s)	82
BsuRI	GGCC	4 cut(s)	211, 322, 367, 432
BsuTUI	ATCGAT	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	588
BtrI	CACGTC	1 cut(s)	558
BtsI	GCAGTG	2 cut(s)	224, 557
BtsIMutI	CAGTG	2 cut(s)	224, 557
Cac8I	GCNNGC	1 cut(s)	434
CfoI	GCGC	1 cut(s)	142
Cfr13I	GGNCC	7 cut(s)	320, 357, 365, 366, 403, 431, 523
ClaI	ATCGAT	1 cut(s)	192
CseI	GACGC	1 cut(s)	244
CviJI	RGCY	5 cut(s)	84, 211, 322, 367, 432
CviKI_1	RGCY	5 cut(s)	84, 211, 322, 367, 432
DdeI	CTNAG	2 cut(s)	129, 150
DpnI	GATC	4 cut(s)	116, 220, 462, 476
DpnII	GATC	4 cut(s)	114, 218, 460, 474
DraIII	CACNNNGTG	1 cut(s)	397
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	369
Eco47I	GGWCC	3 cut(s)	357, 403, 523
EcoO109I	RGGNCCY	2 cut(s)	365, 523
EcoRI	GAATTC	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	75
FaiI	YATR	2 cut(s)	65, 173
FaqI	GGGAC	3 cut(s)	92, 370, 509
FauI	CCCGC	2 cut(s)	441, 505
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	1 cut(s)	230
FspBI	CTAG	1 cut(s)	438
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	1 cut(s)	230
HaeIII	GGCC	4 cut(s)	211, 322, 367, 432
HapII	CCGG	3 cut(s)	58, 265, 360
HgaI	GACGC	1 cut(s)	244
HhaI	GCGC	1 cut(s)	142
Hin1I	GRCGYC	1 cut(s)	255
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HincII	GTYRAC	2 cut(s)	376, 484
HindII	GTYRAC	2 cut(s)	376, 484
HinfI	GANTC	3 cut(s)	88, 420, 516
HpaII	CCGG	3 cut(s)	58, 265, 360
Hpy166II	GTNNAC	7 cut(s)	376, 403, 484, 545, 555, 585, 595
Hpy188I	TCNGA	3 cut(s)	114, 130, 533
Hpy8I	GTNNAC	7 cut(s)	376, 403, 484, 545, 555, 585, 595
Hpy99I	CGWCG	5 cut(s)	163, 188, 452, 458, 488
HpyAV	CCTTC	6 cut(s)	197, 201, 262, 266, 496, 561
HpyCH4III	ACNGT	2 cut(s)	488, 589
HpyCH4IV	ACGT	5 cut(s)	158, 294, 314, 393, 557
HpyCH4V	TGCA	4 cut(s)	391, 564, 585, 595
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpyF3I	CTNAG	2 cut(s)	129, 150
HpySE526I	ACGT	5 cut(s)	158, 294, 314, 393, 557
Hsp92I	GRCGYC	1 cut(s)	255
HspAI	GCGC	1 cut(s)	140
Kzo9I	GATC	4 cut(s)	114, 218, 460, 474
LpnPI	CCDG	7 cut(s)	71, 128, 184, 278, 373, 409, 540
Lsp1109I	GCAGC	1 cut(s)	216
MaeI	CTAG	1 cut(s)	438
MaeII	ACGT	5 cut(s)	158, 294, 314, 393, 557
MalI	GATC	4 cut(s)	116, 220, 462, 476
MboI	GATC	4 cut(s)	114, 218, 460, 474
MboII	GAAGA	2 cut(s)	16, 470
MfeI	CAATTG	1 cut(s)	31
MflI	RGATCY	2 cut(s)	218, 460
MhlI	GDGCHC	3 cut(s)	369, 587, 597
MluCI	AATT	2 cut(s)	31, 38
MlyI	GAGTC	1 cut(s)	525
MmeI	TCCRAC	1 cut(s)	511
MslI	CAYNNNNRTG	1 cut(s)	590
MspI	CCGG	3 cut(s)	58, 265, 360
MunI	CAATTG	1 cut(s)	31
Mva1269I	GAATGC	1 cut(s)	176
MvnI	CGCG	1 cut(s)	512
MwoI	GCNNNNNNNGC	1 cut(s)	252
NdeII	GATC	4 cut(s)	114, 218, 460, 474
NlaIV	GGNNCC	4 cut(s)	358, 367, 405, 525
OliI	CACNNNNGTG	1 cut(s)	590
PcsI	WCGNNNNNNNCGW	3 cut(s)	189, 453, 516
PctI	GAATGC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	88, 420
PflFI	GACNNNGTC	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	231
PleI	GAGTC	1 cut(s)	524
PpsI	GAGTC	1 cut(s)	524
PpuMI	RGGWCCY	1 cut(s)	523
Psp5II	RGGWCCY	1 cut(s)	523
PspN4I	GGNNCC	4 cut(s)	358, 367, 405, 525
PspOMI	GGGCCC	1 cut(s)	365
PspPI	GGNCC	7 cut(s)	320, 357, 365, 366, 403, 431, 523
PspPPI	RGGWCCY	1 cut(s)	523
PsuI	RGATCY	2 cut(s)	218, 460
PsyI	GACNNNGTC	1 cut(s)	296
RseI	CAYNNNNRTG	1 cut(s)	590
SalI	GTCGAC	1 cut(s)	482
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	4 cut(s)	114, 218, 460, 474
Sau96I	GGNCC	7 cut(s)	320, 357, 365, 366, 403, 431, 523
SchI	GAGTC	1 cut(s)	525
SduI	GDGCHC	3 cut(s)	369, 587, 597
SfcI	CTRYAG	1 cut(s)	171
SinI	GGWCC	3 cut(s)	357, 403, 523
SmiMI	CAYNNNNRTG	1 cut(s)	590
Sse9I	AATT	2 cut(s)	31, 38
SsiI	CCGC	3 cut(s)	240, 434, 512
SspMI	CTAG	1 cut(s)	438
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	488, 589
TaiI	ACGT	5 cut(s)	161, 297, 317, 396, 560
TasI	AATT	2 cut(s)	31, 38
TfiI	GAWTC	2 cut(s)	88, 420
TscAI	CASTG	2 cut(s)	231, 557
TseI	GCWGC	1 cut(s)	229
TspDTI	ATGAA	2 cut(s)	17, 40
TspRI	CASTG	2 cut(s)	231, 557
Tth111I	GACNNNGTC	1 cut(s)	296
VneI	GTGCAC	2 cut(s)	583, 593
VpaK11BI	GGWCC	3 cut(s)	357, 403, 523
XapI	RAATTY	1 cut(s)	38
XmiI	GTMKAC	1 cut(s)	483
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.