Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002895.1

Orthogroup ID

OG0011519

Physical Location & Seq

Genomic Coordinates Reverse (-)

72066 .. 73493

Gene Structure 1428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002895.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgccggcgaagccttatttgggacccgatttcagggatgtgaatgaggagattcaacagaagcttcgtggttatttagatgcaaggggagtaaatgatgagctttctttgttcttgcatcagtatatgatgaacaaggatagaatagaacttatccgatggttggggaatctcaagttggctcggaggatttccaggcggcgacggcggcgcaaggcttgcaagagggaggccggaggcatctcagactgttctgggcagcgttcgaggtcgaaggaggtcggggttgcaggttctgggcagcaacccgacctgcaactgcaggttttctgggtagcgctgcaacgatgtcgccggcaactccaccgactgcagaccacttcgcccgacccttggcgcccttccggcaacccccgcagctctgttgcgccccaagcagagctgcagcagcgccgtcggtactttagcgaaagtgcggacgtcctctttagaacgcctgtgtgtgtgtataaaggggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

173

Amino Acids

20.11

Weight (kDa)

10.7

Isoelectric Point (pI)

87.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05971 FvH4_5g36542
rosa_multiflora	Rmu_sc0000239.1_g000102 Rmu_sc0001625.1_g000001 Rmu_sc0002231.1_g000005 Rmu_sc0002895.1_g000015 Rmu_sc0006475.1_g000013 Rmu_sc0014815.1_g000005
rosa_roxburghii	Rroxscaffold_7G00195640
rosa_rugosa	Rorug04G0231200 Rorug06G0166800
rosa_samantha	Rh2AG509200 Rh2AG509500 Rh2BG520600 Rh2BG520700 Rh4BG442100 Rh5BG389700 Rh6CG192000 Rh6CG198800
rosa_wichuraiana	Rw6G016360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	483
Acc36I	ACCTGC	3 cut(s)	281, 313, 321
AccB1I	GGYRCC	1 cut(s)	396
AciI	CCGC	4 cut(s)	199, 208, 415, 476
AcyI	GRCGYC	2 cut(s)	397, 480
AfaI	GTAC	1 cut(s)	461
AfeI	AGCGCT	1 cut(s)	339
AfiI	CCNNNNNNNGG	4 cut(s)	20, 33, 163, 393
AgsI	TTSAA	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	194
AjuI	GAANNNNNNNTTGG	3 cut(s)	34, 161, 193
AluBI	AGCT	4 cut(s)	64, 103, 420, 442
AluI	AGCT	4 cut(s)	64, 103, 420, 442
AlwNI	CAGNNNCTG	1 cut(s)	296
Aor51HI	AGCGCT	1 cut(s)	339
AoxI	GGCC	1 cut(s)	231
ApeKI	GCWGC	7 cut(s)	259, 301, 340, 417, 442, 445, 448
AspLEI	GCGC	5 cut(s)	213, 340, 399, 430, 453
AspS9I	GGNCC	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	23
BanI	GGYRCC	1 cut(s)	396
BbvI	GCAGC	7 cut(s)	271, 313, 327, 429, 429, 457, 460
BccI	CCATC	1 cut(s)	153
BceAI	ACGGC	2 cut(s)	221, 438
BcgI	CGANNNNNNTGC	4 cut(s)	332, 366, 437, 471
BciT130I	CCWGG	1 cut(s)	196
BfmI	CTRYAG	3 cut(s)	320, 371, 443
BfoI	RGCGCY	3 cut(s)	341, 400, 454
BfuAI	ACCTGC	3 cut(s)	281, 313, 321
BglI	GCCNNNNNGGC	1 cut(s)	405
BisI	GCNGC	9 cut(s)	200, 209, 260, 302, 341, 418, 443, 446, 449
BlsI	GCNGC	9 cut(s)	201, 210, 261, 303, 342, 419, 444, 447, 450
Bme1390I	CCNGG	1 cut(s)	196
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	3 cut(s)	24, 25, 398
BmrFI	CCNGG	1 cut(s)	196
BmsI	GCATC	3 cut(s)	70, 127, 249
BpuEI	CTTGAG	1 cut(s)	158
BsaHI	GRCGYC	2 cut(s)	397, 480
BsaJI	CCNNGG	1 cut(s)	392
Bsc4I	CCNNNNNNNGG	4 cut(s)	20, 33, 163, 393
Bse118I	RCCGGY	2 cut(s)	4, 354
BseBI	CCWGG	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	392
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	4 cut(s)	20, 33, 163, 393
BseMII	CTCAG	1 cut(s)	258
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	7 cut(s)	271, 313, 327, 429, 429, 457, 460
BshFI	GGCC	1 cut(s)	233
BshNI	GGYRCC	1 cut(s)	396
BsiSI	CCGG	4 cut(s)	5, 234, 355, 405
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	4 cut(s)	20, 33, 163, 393
BsmFI	GGGAC	1 cut(s)	36
BsnI	GGCC	1 cut(s)	233
BspACI	CCGC	4 cut(s)	199, 208, 415, 476
BspANI	GGCC	1 cut(s)	233
BspCNI	CTCAG	1 cut(s)	257
BspLI	GGNNCC	3 cut(s)	24, 25, 398
BspMAI	CTGCAG	3 cut(s)	324, 375, 447
BspMI	ACCTGC	3 cut(s)	281, 313, 321
BspT107I	GGYRCC	1 cut(s)	396
BsrFI	RCCGGY	2 cut(s)	4, 354
BssAI	RCCGGY	2 cut(s)	4, 354
BssECI	CCNNGG	1 cut(s)	392
BssNI	GRCGYC	2 cut(s)	397, 480
BssT1I	CCWWGG	1 cut(s)	392
Bst2UI	CCWGG	1 cut(s)	196
Bst4CI	ACNGT	1 cut(s)	251
BstACI	GRCGYC	2 cut(s)	397, 480
BstAPI	GCANNNNNTGC	1 cut(s)	219
BstC8I	GCNNGC	3 cut(s)	6, 220, 356
BstDEI	CTNAG	1 cut(s)	244
BstF5I	GGATG	1 cut(s)	43
BstH2I	RGCGCY	3 cut(s)	341, 400, 454
BstHHI	GCGC	5 cut(s)	213, 340, 399, 430, 453
BstMWI	GCNNNNNNNGC	8 cut(s)	10, 205, 208, 219, 405, 414, 434, 448
BstNI	CCWGG	1 cut(s)	196
BstSCI	CCNGG	1 cut(s)	194
BstSFI	CTRYAG	3 cut(s)	320, 371, 443
BstV1I	GCAGC	7 cut(s)	271, 313, 327, 429, 429, 457, 460
BsuRI	GGCC	1 cut(s)	233
BtsCI	GGATG	1 cut(s)	43
BveI	ACCTGC	3 cut(s)	281, 313, 321
Cac8I	GCNNGC	3 cut(s)	6, 220, 356
CaiI	CAGNNNCTG	1 cut(s)	296
CfoI	GCGC	5 cut(s)	213, 340, 399, 430, 453
Cfr10I	RCCGGY	2 cut(s)	4, 354
Cfr13I	GGNCC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	460
CviJI	RGCY	8 cut(s)	13, 64, 103, 182, 218, 233, 420, 442
CviKI_1	RGCY	8 cut(s)	13, 64, 103, 182, 218, 233, 420, 442
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	1 cut(s)	244
DinI	GGCGCC	1 cut(s)	398
Eco130I	CCWWGG	1 cut(s)	392
Eco47I	GGWCC	1 cut(s)	23
Eco47III	AGCGCT	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	392
EgeI	GGCGCC	1 cut(s)	398
EheI	GGCGCC	1 cut(s)	398
ErhI	CCWWGG	1 cut(s)	392
FaiI	YATR	3 cut(s)	126, 128, 510
FaqI	GGGAC	1 cut(s)	36
FauI	CCCGC	1 cut(s)	422
Fnu4HI	GCNGC	9 cut(s)	200, 209, 260, 302, 341, 418, 443, 446, 449
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	9 cut(s)	200, 209, 260, 302, 341, 418, 443, 446, 449
GlaI	GCGC	5 cut(s)	212, 339, 398, 429, 452
GluI	GCNGC	9 cut(s)	200, 209, 260, 302, 341, 418, 443, 446, 449
HaeII	RGCGCY	3 cut(s)	341, 400, 454
HaeIII	GGCC	1 cut(s)	233
HapII	CCGG	4 cut(s)	5, 234, 355, 405
HhaI	GCGC	5 cut(s)	213, 340, 399, 430, 453
Hin1I	GRCGYC	2 cut(s)	397, 480
Hin6I	GCGC	5 cut(s)	211, 338, 397, 428, 451
HinP1I	GCGC	5 cut(s)	211, 338, 397, 428, 451
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	2 cut(s)	52, 169
HpaII	CCGG	4 cut(s)	5, 234, 355, 405
Hpy188I	TCNGA	3 cut(s)	158, 186, 247
Hpy99I	CGWCG	2 cut(s)	207, 459
HpyAV	CCTTC	2 cut(s)	268, 411
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	9 cut(s)	83, 118, 222, 290, 316, 322, 343, 373, 445
HpyF10VI	GCNNNNNNNGC	8 cut(s)	10, 205, 208, 219, 405, 414, 434, 448
HpyF3I	CTNAG	1 cut(s)	244
HpySE526I	ACGT	1 cut(s)	480
Hsp92I	GRCGYC	2 cut(s)	397, 480
HspAI	GCGC	5 cut(s)	211, 338, 397, 428, 451
KasI	GGCGCC	1 cut(s)	396
KflI	GGGWCCC	1 cut(s)	23
KroI	GCCGGC	2 cut(s)	4, 354
KroNI	GCCGGC	2 cut(s)	6, 356
Lsp1109I	GCAGC	7 cut(s)	271, 313, 327, 429, 429, 457, 460
LweI	GCATC	3 cut(s)	70, 127, 249
MaeII	ACGT	1 cut(s)	480
Mly113I	GGCGCC	1 cut(s)	397
MnlI	CCTC	8 cut(s)	40, 180, 219, 223, 230, 261, 271, 494
MroNI	GCCGGC	2 cut(s)	4, 354
MseI	TTAA	1 cut(s)	520
MspI	CCGG	4 cut(s)	5, 234, 355, 405
MspR9I	CCNGG	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	196
MwoI	GCNNNNNNNGC	8 cut(s)	10, 205, 208, 219, 405, 414, 434, 448
NaeI	GCCGGC	2 cut(s)	6, 356
NarI	GGCGCC	1 cut(s)	397
NgoMIV	GCCGGC	2 cut(s)	4, 354
NlaIV	GGNNCC	3 cut(s)	24, 25, 398
PdiI	GCCGGC	2 cut(s)	6, 356
PfeI	GAWTC	2 cut(s)	52, 169
PkrI	GCNGC	9 cut(s)	201, 210, 261, 303, 342, 419, 444, 447, 450
PluTI	GGCGCC	1 cut(s)	400
PpuMI	RGGWCCY	1 cut(s)	23
Psp5II	RGGWCCY	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	194
PspN4I	GGNNCC	3 cut(s)	24, 25, 398
PspPI	GGNCC	1 cut(s)	23
PspPPI	RGGWCCY	1 cut(s)	23
PstI	CTGCAG	3 cut(s)	324, 375, 447
PstNI	CAGNNNCTG	1 cut(s)	296
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
SaqAI	TTAA	1 cut(s)	520
SatI	GCNGC	9 cut(s)	200, 209, 260, 302, 341, 418, 443, 446, 449
Sau96I	GGNCC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	196
SfaNI	GCATC	3 cut(s)	70, 127, 249
SfcI	CTRYAG	3 cut(s)	320, 371, 443
SfoI	GGCGCC	1 cut(s)	398
SinI	GGWCC	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SsiI	CCGC	4 cut(s)	199, 208, 415, 476
SspDI	GGCGCC	1 cut(s)	396
StyD4I	CCNGG	1 cut(s)	194
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	2 cut(s)	266, 272
TauI	GCSGC	2 cut(s)	202, 211
TfiI	GAWTC	2 cut(s)	52, 169
Tru1I	TTAA	1 cut(s)	520
Tru9I	TTAA	1 cut(s)	520
TseI	GCWGC	7 cut(s)	259, 301, 340, 417, 442, 445, 448
TspDTI	ATGAA	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	23
ZraI	GACGTC	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.