Rh2BG520600

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0011519
Physical Location & Seq
Reverse (-)
73025748 .. 73026882
1135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG520600.1

Sequence Viewer

Length: 255 bp
ATGAAGAATACTACTAGTCCAGTACTAATGTCGACACAGTTTCTGGTGTTCGCTGCTCTTATTATCATCCTACCGCTCTTCATCTCTCTGGCTCGAGCAGAAGTTCATTACTACGATTTTATAGTTAAGGAGGTAAACTTCACTAGATTGTGTGAATCAAAGCTCATGTTAGTAGTAAACGAGAGCTATCCAGGTCCAGCAATACGAGCTCACAAAGGGGATACAATTTATGTGGTTCACCTAGCTAGTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

84

Amino Acids

9.49

Weight (kDa)

8.85

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 76
AccI GTMKAC 1 cut(s) 32
AciI CCGC 1 cut(s) 74
AfaI GTAC 1 cut(s) 24
AhlI ACTAGT 1 cut(s) 14
AjnI CCWGG 1 cut(s) 190
AluBI AGCT 4 cut(s) 163, 186, 209, 245
AluI AGCT 4 cut(s) 163, 186, 209, 245
Alw21I GWGCWC 1 cut(s) 211
AlwNI CAGNNNCTG 1 cut(s) 43
Ama87I CYCGRG 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 53
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 230
AvaI CYCGRG 1 cut(s) 93
AvaII GGWCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 211
BbvI GCAGC 1 cut(s) 40
BciT130I CCWGG 1 cut(s) 192
BciVI GTATCC 1 cut(s) 214
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 4 cut(s) 15, 144, 242, 246
BfuI GTATCC 1 cut(s) 214
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmcAI AGTACT 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 192
Bme18I GGWCC 1 cut(s) 194
BmeT110I CYCGRG 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 192
Bse1I ACTGG 1 cut(s) 20
BseBI CCWGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 66
BseNI ACTGG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 211
BsiHKCI CYCGRG 1 cut(s) 93
BsoBI CYCGRG 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 211
BspACI CCGC 1 cut(s) 74
BspQI GCTCTTC 1 cut(s) 83
BsrBI CCGCTC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 39
Bst6I CTCTTC 1 cut(s) 83
BstF5I GGATG 1 cut(s) 66
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNI CCWGG 1 cut(s) 192
BstSCI CCNGG 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 40
BsuI GTATCC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 66
CaiI CAGNNNCTG 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 194
Csp6I GTAC 1 cut(s) 23
CspCI CAANNNNNGTGG 2 cut(s) 213, 248
CviAII CATG 1 cut(s) 166
CviJI RGCY 5 cut(s) 92, 163, 186, 209, 245
CviKI_1 RGCY 5 cut(s) 92, 163, 186, 209, 245
CviQI GTAC 1 cut(s) 23
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Ecl136II GAGCTC 1 cut(s) 209
Eco24I GRGCYC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 194
Eco53kI GAGCTC 1 cut(s) 209
Eco88I CYCGRG 1 cut(s) 93
EcoICRI GAGCTC 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 211
FaeI CATG 1 cut(s) 169
FaiI YATR 3 cut(s) 122, 167, 231
FatI CATG 1 cut(s) 165
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 53
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 4 cut(s) 15, 144, 242, 246
GluI GCNGC 1 cut(s) 54
Hin1II CATG 1 cut(s) 169
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 1 cut(s) 155
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 4 cut(s) 33, 136, 178, 238
Hpy8I GTNNAC 4 cut(s) 33, 136, 178, 238
HpyCH4III ACNGT 1 cut(s) 39
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
Hsp92II CATG 1 cut(s) 169
LguI GCTCTTC 1 cut(s) 83
LpnPI CCDG 6 cut(s) 29, 33, 74, 177, 204, 210
Lsp1109I GCAGC 1 cut(s) 40
MaeI CTAG 4 cut(s) 15, 144, 242, 246
MbiI CCGCTC 1 cut(s) 76
MboII GAAGA 2 cut(s) 16, 70
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 1 cut(s) 225
MnlI CCTC 1 cut(s) 124
MseI TTAA 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 192
MvaI CCWGG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 206
NlaIII CATG 1 cut(s) 169
PaeR7I CTCGAG 1 cut(s) 93
PciSI GCTCTTC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 155
PkrI GCNGC 1 cut(s) 55
Psp124BI GAGCTC 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
PspPI GGNCC 1 cut(s) 194
PspXI VCTCGAGB 1 cut(s) 93
PstNI CAGNNNCTG 1 cut(s) 43
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SacI GAGCTC 1 cut(s) 211
SalI GTCGAC 1 cut(s) 31
SapI GCTCTTC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 54
Sau96I GGNCC 1 cut(s) 194
ScaI AGTACT 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 1 cut(s) 211
SetI ASST 7 cut(s) 135, 165, 188, 196, 211, 243, 247
Sfr274I CTCGAG 1 cut(s) 93
SinI GGWCC 1 cut(s) 194
SlaI CTCGAG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
SpeI ACTAGT 1 cut(s) 14
Sse9I AATT 1 cut(s) 225
SsiI CCGC 1 cut(s) 74
SspMI CTAG 4 cut(s) 15, 144, 242, 246
SstI GAGCTC 1 cut(s) 211
StyD4I CCNGG 1 cut(s) 190
TaaI ACNGT 1 cut(s) 39
TaqI TCGA 2 cut(s) 32, 94
TasI AATT 1 cut(s) 225
TatI WGTACW 1 cut(s) 22
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseI GCWGC 1 cut(s) 53
TspDTI ATGAA 3 cut(s) 17, 70, 95
VpaK11BI GGWCC 1 cut(s) 194
XhoI CTCGAG 1 cut(s) 93
XmiI GTMKAC 1 cut(s) 32
XspI CTAG 4 cut(s) 15, 144, 242, 246
ZrmI AGTACT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.