Rh6CG198800

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0011519
Physical Location & Seq
Forward (+)
33183138 .. 33189029
5892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG198800.1

Sequence Viewer

Length: 345 bp
ATGGGTACCTTTCCAGATTTTCTGGGTTTGTTTCTGCTATGTGGGATGCTGCATTGCATTGTTGAATGCCATATCCACTACCACGACTTTGTACTCAAGAAGGAGAACTTTACAAGATTATGTAACACAAAGAGCATGCTGGTAGTGAATGGCAGTTTTCCGGGGCCAGTCATTCGTGTGCAAAAGGGGGATACTGTCTTTGTCAATGTTCACAATCAAGGAGATTATGGAGTCACTATTCACTGGAAGTTTGGGTCAGCGGTGGTGGGGAGCTCCTCCTCATCTCTGATCAGGCCTGCAAATGAGGCAGGGGCGGGGGAATTCCGCTCTCCTAATCGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

114

Amino Acids

12.57

Weight (kDa)

7.75

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 33 - 83 1.8e-13 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 5
AccB1I GGYRCC 1 cut(s) 5
AccBSI CCGCTC 1 cut(s) 327
AciI CCGC 3 cut(s) 260, 314, 325
AcsI RAATTY 1 cut(s) 320
AfaI GTAC 2 cut(s) 7, 93
AgsI TTSAA 1 cut(s) 65
AluBI AGCT 1 cut(s) 273
AluI AGCT 1 cut(s) 273
Alw21I GWGCWC 1 cut(s) 275
AoxI GGCC 2 cut(s) 164, 293
ApeKI GCWGC 1 cut(s) 49
ApoI RAATTY 1 cut(s) 320
Asp718I GGTACC 1 cut(s) 5
AspS9I GGNCC 1 cut(s) 164
AsuC2I CCSGG 1 cut(s) 162
BanI GGYRCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 275
BbvI GCAGC 1 cut(s) 36
BciVI GTATCC 1 cut(s) 184
BclI TGATCA 1 cut(s) 288
BcnI CCSGG 1 cut(s) 162
BfuI GTATCC 1 cut(s) 184
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
Bme1390I CCNGG 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 2 cut(s) 7, 165
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 161
Bse1I ACTGG 2 cut(s) 167, 248
Bse3DI GCAATG 1 cut(s) 52
BseDI CCNNGG 1 cut(s) 161
BseGI GGATG 1 cut(s) 51
BseMI GCAATG 1 cut(s) 52
BseNI ACTGG 2 cut(s) 167, 248
BseRI GAGGAG 2 cut(s) 265, 268
BseXI GCAGC 1 cut(s) 36
BshFI GGCC 2 cut(s) 166, 295
BshNI GGYRCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 275
BsiSI CCGG 1 cut(s) 161
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 2 cut(s) 166, 295
Bsp1286I GDGCHC 1 cut(s) 275
Bsp143I GATC 1 cut(s) 288
BspACI CCGC 3 cut(s) 260, 314, 325
BspANI GGCC 2 cut(s) 166, 295
BspLI GGNNCC 2 cut(s) 7, 165
BspT107I GGYRCC 1 cut(s) 5
BsrBI CCGCTC 1 cut(s) 327
BsrDI GCAATG 1 cut(s) 52
BsrI ACTGG 2 cut(s) 167, 248
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 196
BstC8I GCNNGC 2 cut(s) 137, 297
BstF5I GGATG 1 cut(s) 51
BstKTI GATC 1 cut(s) 291
BstMBI GATC 1 cut(s) 288
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 36
BsuI GTATCC 1 cut(s) 184
BsuRI GGCC 2 cut(s) 166, 295
BtsCI GGATG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 241
Cac8I GCNNGC 2 cut(s) 137, 297
Cfr13I GGNCC 1 cut(s) 164
Csp6I GTAC 2 cut(s) 6, 92
CviAII CATG 1 cut(s) 136
CviJI RGCY 3 cut(s) 166, 273, 295
CviKI_1 RGCY 3 cut(s) 166, 273, 295
CviQI GTAC 2 cut(s) 6, 92
DpnI GATC 1 cut(s) 290
DpnII GATC 1 cut(s) 288
Ecl136II GAGCTC 1 cut(s) 273
Eco147I AGGCCT 1 cut(s) 295
Eco24I GRGCYC 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 273
EcoICRI GAGCTC 1 cut(s) 273
EcoRI GAATTC 1 cut(s) 320
EcoT38I GRGCYC 1 cut(s) 275
FaeI CATG 1 cut(s) 139
FaiI YATR 5 cut(s) 40, 72, 121, 137, 228
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FatI CATG 1 cut(s) 135
FauI CCCGC 1 cut(s) 307
FbaI TGATCA 1 cut(s) 288
Fnu4HI GCNGC 1 cut(s) 50
FokI GGATG 1 cut(s) 58
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 1 cut(s) 50
GluI GCNGC 1 cut(s) 50
HaeIII GGCC 2 cut(s) 166, 295
HapII CCGG 1 cut(s) 161
Hin1II CATG 1 cut(s) 139
HinfI GANTC 1 cut(s) 231
HpaII CCGG 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 3 cut(s) 14, 97, 338
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 4 cut(s) 52, 57, 181, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
Hsp92II CATG 1 cut(s) 139
KpnI GGTACC 1 cut(s) 9
Ksp22I TGATCA 1 cut(s) 288
Kzo9I GATC 1 cut(s) 288
LmnI GCTCC 2 cut(s) 270, 278
LpnPI CCDG 9 cut(s) 8, 27, 125, 174, 180, 229, 277, 294, 309
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 122, 232
MalI GATC 1 cut(s) 290
MbiI CCGCTC 1 cut(s) 327
MboI GATC 1 cut(s) 288
MhlI GDGCHC 1 cut(s) 275
MluCI AATT 1 cut(s) 320
MlyI GAGTC 1 cut(s) 240
MnlI CCTC 3 cut(s) 286, 289, 298
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 260
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 305
NciI CCSGG 1 cut(s) 162
NdeII GATC 1 cut(s) 288
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 2 cut(s) 7, 165
NmuCI GTSAC 1 cut(s) 232
NspI RCATGY 1 cut(s) 139
PaeI GCATGC 1 cut(s) 139
PceI AGGCCT 1 cut(s) 295
PctI GAATGC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 51
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
Psp124BI GAGCTC 1 cut(s) 275
PspN4I GGNNCC 2 cut(s) 7, 165
PspPI GGNCC 1 cut(s) 164
RsaI GTAC 2 cut(s) 7, 93
RsaNI GTAC 2 cut(s) 6, 92
RseI CAYNNNNRTG 1 cut(s) 176
SacI GAGCTC 1 cut(s) 275
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 1 cut(s) 288
Sau96I GGNCC 1 cut(s) 164
SchI GAGTC 1 cut(s) 240
ScrFI CCNGG 1 cut(s) 162
SduI GDGCHC 1 cut(s) 275
SetI ASST 2 cut(s) 11, 275
SfaNI GCATC 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
SphI GCATGC 1 cut(s) 139
Sse9I AATT 1 cut(s) 320
SseBI AGGCCT 1 cut(s) 295
SsiI CCGC 3 cut(s) 260, 314, 325
SstI GAGCTC 1 cut(s) 275
StuI AGGCCT 1 cut(s) 295
StyD4I CCNGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 196
TasI AATT 1 cut(s) 320
TatI WGTACW 1 cut(s) 91
TscAI CASTG 1 cut(s) 248
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 232
TspRI CASTG 1 cut(s) 248
XapI RAATTY 1 cut(s) 320
XceI RCATGY 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.