Rh6CG192000

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0011519
Physical Location & Seq
Forward (+)
31603370 .. 31603746
377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG192000.1

Sequence Viewer

Length: 273 bp
ATGGGGTGCTTCAAACCTATCGGCTTCTTCTGCTCTGTTTTCTGCTTCGCCGTATTTGTCTGCATTTTGTTGTTGCAGTCTGAGGCTGAAGCTAGTGAGCTCTACTATGATTTTGTTCTCAAGGAAACCAATTTCACGAAGTTATGCAGCACAAAGGGTGCACTGGTTGTAAACGGAAGTTTTCCGGGGCCGGTGATTACTGCTCGCAAGGGGGATACTGTCTATGTTAATGTGCACAATGAAGGAACATATGGTGTCACCATTCACTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

90

Amino Acids

9.94

Weight (kDa)

6.03

Isoelectric Point (pI)

18.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 41 - 90 1.2e-11 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 267
AcuI CTGAAG 1 cut(s) 108
AfiI CCNNNNNNNGG 1 cut(s) 267
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 2 cut(s) 92, 100
AluI AGCT 2 cut(s) 92, 100
Alw21I GWGCWC 3 cut(s) 102, 163, 237
Alw44I GTGCAC 2 cut(s) 159, 233
AoxI GGCC 1 cut(s) 188
ApaLI GTGCAC 2 cut(s) 159, 233
ApeKI GCWGC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 188
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 2 cut(s) 205, 250
BaeGI GKGCMC 2 cut(s) 163, 237
BanII GRGCYC 1 cut(s) 102
Bbv12I GWGCWC 3 cut(s) 102, 163, 237
BbvI GCAGC 1 cut(s) 159
BceAI ACGGC 1 cut(s) 35
BciVI GTATCC 1 cut(s) 208
BcnI CCSGG 1 cut(s) 186
BfaI CTAG 1 cut(s) 93
BfuI GTATCC 1 cut(s) 208
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse118I RCCGGY 1 cut(s) 190
Bse1I ACTGG 2 cut(s) 168, 272
BseDI CCNNGG 1 cut(s) 185
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 2 cut(s) 168, 272
BseSI GKGCMC 2 cut(s) 163, 237
BseXI GCAGC 1 cut(s) 159
BshFI GGCC 1 cut(s) 190
BsiHKAI GWGCWC 3 cut(s) 102, 163, 237
BsiSI CCGG 2 cut(s) 185, 191
BslI CCNNNNNNNGG 1 cut(s) 267
BsnI GGCC 1 cut(s) 190
Bsp1286I GDGCHC 3 cut(s) 102, 163, 237
BspANI GGCC 1 cut(s) 190
BspCNI CTCAG 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 189
BsrFI RCCGGY 1 cut(s) 190
BsrI ACTGG 2 cut(s) 168, 272
BssAI RCCGGY 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 185
Bst4CI ACNGT 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 1 cut(s) 81
BstMWI GCNNNNNNNGC 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 184
BstSLI GKGCMC 2 cut(s) 163, 237
BstV1I GCAGC 1 cut(s) 159
BsuI GTATCC 1 cut(s) 208
BsuRI GGCC 1 cut(s) 190
BtsIMutI CAGTG 2 cut(s) 161, 265
Cac8I GCNNGC 1 cut(s) 205
Cfr10I RCCGGY 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 188
CviJI RGCY 5 cut(s) 24, 86, 92, 100, 190
CviKI_1 RGCY 5 cut(s) 24, 86, 92, 100, 190
DdeI CTNAG 1 cut(s) 81
Ecl136II GAGCTC 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 108
EcoICRI GAGCTC 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 102
FaiI YATR 5 cut(s) 108, 145, 225, 250, 252
FauNDI CATATG 1 cut(s) 250
Fnu4HI GCNGC 1 cut(s) 148
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 148
FspBI CTAG 1 cut(s) 93
GluI GCNGC 1 cut(s) 148
HaeIII GGCC 1 cut(s) 190
HapII CCGG 2 cut(s) 185, 191
HpaII CCGG 2 cut(s) 185, 191
HphI GGTGA 2 cut(s) 205, 250
Hpy166II GTNNAC 3 cut(s) 161, 172, 235
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 1 cut(s) 136
Hpy8I GTNNAC 3 cut(s) 161, 172, 235
HpyAV CCTTC 1 cut(s) 236
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4V TGCA 5 cut(s) 63, 76, 147, 161, 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
HpyF3I CTNAG 1 cut(s) 81
LpnPI CCDG 4 cut(s) 149, 198, 204, 253
Lsp1109I GCAGC 1 cut(s) 159
MaeI CTAG 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 256
MboII GAAGA 1 cut(s) 19
MhlI GDGCHC 3 cut(s) 102, 163, 237
MluCI AATT 1 cut(s) 130
MnlI CCTC 1 cut(s) 76
MseI TTAA 1 cut(s) 228
MspI CCGG 2 cut(s) 185, 191
MspR9I CCNGG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 30
NciI CCSGG 1 cut(s) 186
NdeI CATATG 1 cut(s) 250
NlaIV GGNNCC 1 cut(s) 189
NmuCI GTSAC 1 cut(s) 256
PflMI CCANNNNNTGG 1 cut(s) 267
PkrI GCNGC 1 cut(s) 149
Psp124BI GAGCTC 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 1 cut(s) 188
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 1 cut(s) 148
Sau96I GGNCC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 186
SduI GDGCHC 3 cut(s) 102, 163, 237
SetI ASST 3 cut(s) 19, 94, 102
SgeI CNNG 9 cut(s) 105, 133, 148, 176, 197, 198, 203, 216, 220
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 1 cut(s) 130
SspMI CTAG 1 cut(s) 93
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 184
TaaI ACNGT 1 cut(s) 220
TasI AATT 1 cut(s) 130
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 2 cut(s) 168, 272
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 1 cut(s) 147
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 1 cut(s) 255
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 2 cut(s) 168, 272
Van91I CCANNNNNTGG 1 cut(s) 267
VneI GTGCAC 2 cut(s) 159, 233
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.