Rh2AG509200

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0011519
Physical Location & Seq
Reverse (-)
73419963 .. 73420977
1015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG509200.1

Sequence Viewer

Length: 261 bp
ATGAAATCCCTGAAGAGAACTACTGGTCCAGTGATGTCGACAGAGTTTCCAGTGTTCGCTGTACTTATTATCATCCTACAGATCTTCATCTCTCTGGCCCGAGCCGAAGTGCATTACTACGATTTTATAGTTAAGGAGGTAAACTTCACAAGATTGTGCGAGTCAAAGCTCATGTTAGTAGTAAACGAGAGTTTTCCGGGTCCAGAATTACGAGCTCGCAAAGGGGATACAATTTATGATCTTGGTATTTGGGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

86

Amino Acids

9.91

Weight (kDa)

6.56

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 38
AcsI RAATTY 1 cut(s) 255
AcuI CTGAAG 1 cut(s) 32
AfaI GTAC 1 cut(s) 63
AloI GAACNNNNNNTCC 2 cut(s) 10, 42
AluBI AGCT 2 cut(s) 169, 215
AluI AGCT 2 cut(s) 169, 215
Alw21I GWGCWC 1 cut(s) 217
Ama87I CYCGRG 1 cut(s) 99
AoxI GGCC 1 cut(s) 96
ApoI RAATTY 1 cut(s) 255
AspS9I GGNCC 3 cut(s) 26, 97, 200
AsuC2I CCSGG 1 cut(s) 198
AvaI CYCGRG 1 cut(s) 99
AvaII GGWCC 2 cut(s) 26, 200
BanII GRGCYC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 217
BciVI GTATCC 1 cut(s) 220
BcnI CCSGG 1 cut(s) 198
BfmI CTRYAG 1 cut(s) 77
BfuI GTATCC 1 cut(s) 220
BglII AGATCT 1 cut(s) 81
Bme1390I CCNGG 1 cut(s) 198
Bme18I GGWCC 2 cut(s) 26, 200
BmeT110I CYCGRG 1 cut(s) 99
BmgT120I GGNCC 3 cut(s) 26, 97, 200
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 1 cut(s) 198
BpuMI CCSGG 1 cut(s) 198
BsaBI GATNNNNATC 1 cut(s) 86
Bse1I ACTGG 3 cut(s) 28, 29, 50
Bse8I GATNNNNATC 1 cut(s) 86
BseGI GGATG 1 cut(s) 72
BseJI GATNNNNATC 1 cut(s) 86
BseNI ACTGG 3 cut(s) 28, 29, 50
BshFI GGCC 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 217
BsiHKCI CYCGRG 1 cut(s) 99
BsiSI CCGG 1 cut(s) 197
BsnI GGCC 1 cut(s) 98
BsoBI CYCGRG 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 2 cut(s) 81, 238
BspANI GGCC 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 201
BsrI ACTGG 3 cut(s) 28, 29, 50
BssMI GATC 2 cut(s) 81, 238
Bst6I CTCTTC 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 217
BstF5I GGATG 1 cut(s) 72
BstKTI GATC 2 cut(s) 84, 241
BstMBI GATC 2 cut(s) 81, 238
BstSCI CCNGG 1 cut(s) 196
BstSFI CTRYAG 1 cut(s) 77
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BsuI GTATCC 1 cut(s) 220
BsuRI GGCC 1 cut(s) 98
BtsCI GGATG 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 36, 57
Cac8I GCNNGC 1 cut(s) 217
Cfr13I GGNCC 3 cut(s) 26, 97, 200
Csp6I GTAC 1 cut(s) 62
CviAII CATG 1 cut(s) 172
CviJI RGCY 4 cut(s) 98, 104, 169, 215
CviKI_1 RGCY 4 cut(s) 98, 104, 169, 215
CviQI GTAC 1 cut(s) 62
DpnI GATC 2 cut(s) 83, 240
DpnII GATC 2 cut(s) 81, 238
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
Ecl136II GAGCTC 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 217
Eco47I GGWCC 2 cut(s) 26, 200
Eco53kI GAGCTC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 99
EcoICRI GAGCTC 1 cut(s) 215
EcoT38I GRGCYC 1 cut(s) 217
FaeI CATG 1 cut(s) 175
FaiI YATR 3 cut(s) 128, 173, 237
FatI CATG 1 cut(s) 171
FblI GTMKAC 1 cut(s) 38
FokI GGATG 1 cut(s) 59
FriOI GRGCYC 1 cut(s) 217
HaeIII GGCC 1 cut(s) 98
HapII CCGG 1 cut(s) 197
Hin1II CATG 1 cut(s) 175
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HinfI GANTC 1 cut(s) 161
HpaII CCGG 1 cut(s) 197
Hpy166II GTNNAC 3 cut(s) 39, 142, 184
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 3 cut(s) 39, 142, 184
HpyCH4V TGCA 1 cut(s) 112
Hsp92II CATG 1 cut(s) 175
Kzo9I GATC 2 cut(s) 81, 238
LpnPI CCDG 7 cut(s) 9, 23, 42, 63, 80, 210, 216
MalI GATC 2 cut(s) 83, 240
MboI GATC 2 cut(s) 81, 238
MboII GAAGA 2 cut(s) 25, 76
MflI RGATCY 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 3 cut(s) 206, 231, 255
MlyI GAGTC 1 cut(s) 170
MnlI CCTC 1 cut(s) 130
MseI TTAA 1 cut(s) 132
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 198
NciI CCSGG 1 cut(s) 198
NdeII GATC 2 cut(s) 81, 238
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 1 cut(s) 201
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
Psp124BI GAGCTC 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 3 cut(s) 26, 97, 200
PsuI RGATCY 1 cut(s) 81
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
SacI GAGCTC 1 cut(s) 217
SalI GTCGAC 1 cut(s) 37
SaqAI TTAA 1 cut(s) 132
Sau3AI GATC 2 cut(s) 81, 238
Sau96I GGNCC 3 cut(s) 26, 97, 200
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 1 cut(s) 217
SetI ASST 3 cut(s) 141, 171, 217
SfcI CTRYAG 1 cut(s) 77
SinI GGWCC 2 cut(s) 26, 200
Sse9I AATT 3 cut(s) 206, 231, 255
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 1 cut(s) 196
TaqI TCGA 1 cut(s) 38
TasI AATT 3 cut(s) 206, 231, 255
TatI WGTACW 1 cut(s) 61
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 2 cut(s) 36, 57
TspDTI ATGAA 2 cut(s) 17, 76
TspRI CASTG 2 cut(s) 36, 57
VpaK11BI GGWCC 2 cut(s) 26, 200
XapI RAATTY 1 cut(s) 255
XmiI GTMKAC 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.