Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001625.1

Orthogroup ID

OG0011519

Physical Location & Seq

Genomic Coordinates Reverse (-)

7030 .. 8605

Gene Structure 1576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001625.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atggtcatagtgaccatcaaatctgggaatgcccggctgaacaaagaactcgacggccatgaagatcttgttgaggtggtcgaggttgaggtcgacggtggtgcggcagaggaggaagccgcgggagtcgaggtcctggttggagatggagcacttgttggcccacttgaccagctggacactgccatgtcatcagttgacgcagcagcttccaggcggcaacggcgacgcgcggcttgcaggagggaggccggaggcatcccggaccgttctgggcagcgatcgaggtcagaggagatcgaggttgcacgttctgggcagcggccggacctgcaactgcaagcttctgggcaacgctgcaacctcgtcgccggcgactccacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

13.51

Weight (kDa)

4.75

Isoelectric Point (pI)

70.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05971 FvH4_5g36542
rosa_multiflora	Rmu_sc0000239.1_g000102 Rmu_sc0001625.1_g000001 Rmu_sc0002231.1_g000005 Rmu_sc0002895.1_g000015 Rmu_sc0006475.1_g000013 Rmu_sc0014815.1_g000005
rosa_roxburghii	Rroxscaffold_7G00195640
rosa_rugosa	Rorug04G0231200 Rorug06G0166800
rosa_samantha	Rh2AG509200 Rh2AG509500 Rh2BG520600 Rh2BG520700 Rh4BG442100 Rh5BG389700 Rh6CG192000 Rh6CG198800
rosa_wichuraiana	Rw6G016360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	339
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	3 cut(s)	122, 231, 233
AciI	CCGC	6 cut(s)	104, 120, 122, 217, 233, 322
AcoI	YGGCCR	2 cut(s)	55, 323
AjnI	CCWGG	2 cut(s)	135, 212
AluBI	AGCT	3 cut(s)	175, 209, 344
AluI	AGCT	3 cut(s)	175, 209, 344
Alw21I	GWGCWC	1 cut(s)	154
AoxI	GGCC	4 cut(s)	55, 160, 249, 323
ApeKI	GCWGC	5 cut(s)	203, 206, 277, 319, 357
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	4 cut(s)	133, 161, 265, 328
AsuC2I	CCSGG	2 cut(s)	34, 263
AvaII	GGWCC	3 cut(s)	133, 265, 328
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	5 cut(s)	215, 218, 289, 331, 344
BccI	CCATC	2 cut(s)	23, 140
BceAI	ACGGC	2 cut(s)	70, 239
BcgI	CGANNNNNNTGC	4 cut(s)	83, 117, 349, 383
BciT130I	CCWGG	2 cut(s)	137, 214
BcnI	CCSGG	2 cut(s)	34, 263
BfuAI	ACCTGC	1 cut(s)	339
BglII	AGATCT	1 cut(s)	64
Bme1390I	CCNGG	4 cut(s)	34, 137, 214, 263
Bme18I	GGWCC	3 cut(s)	133, 265, 328
BmgT120I	GGNCC	4 cut(s)	133, 161, 265, 328
BmrFI	CCNGG	4 cut(s)	34, 137, 214, 263
BmsI	GCATC	1 cut(s)	267
BpuMI	CCSGG	2 cut(s)	34, 263
BsaJI	CCNNGG	1 cut(s)	120
BsaXI	ACNNNNNCTCC	4 cut(s)	117, 141, 147, 171
Bse118I	RCCGGY	1 cut(s)	371
BseBI	CCWGG	2 cut(s)	137, 214
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	258
BseRI	GAGGAG	2 cut(s)	125, 308
BseX3I	CGGCCG	1 cut(s)	323
BseXI	GCAGC	5 cut(s)	215, 218, 289, 331, 344
Bsh1236I	CGCG	3 cut(s)	122, 231, 233
Bsh1285I	CGRYCG	2 cut(s)	284, 326
BshFI	GGCC	4 cut(s)	57, 162, 251, 325
BsiEI	CGRYCG	2 cut(s)	284, 326
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	5 cut(s)	34, 252, 263, 326, 372
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	4 cut(s)	57, 162, 251, 325
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	3 cut(s)	64, 281, 297
BspACI	CCGC	6 cut(s)	104, 120, 122, 217, 233, 322
BspANI	GGCC	4 cut(s)	57, 162, 251, 325
BspFNI	CGCG	3 cut(s)	122, 231, 233
BspMI	ACCTGC	1 cut(s)	339
BsrFI	RCCGGY	1 cut(s)	371
BssAI	RCCGGY	1 cut(s)	371
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	3 cut(s)	64, 281, 297
Bst2UI	CCWGG	2 cut(s)	137, 214
Bst4CI	ACNGT	2 cut(s)	98, 269
BstC8I	GCNNGC	3 cut(s)	238, 342, 373
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	258
BstFNI	CGCG	3 cut(s)	122, 231, 233
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	3 cut(s)	67, 284, 300
BstMBI	GATC	3 cut(s)	64, 281, 297
BstMCI	CGRYCG	2 cut(s)	284, 326
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 237, 331
BstNI	CCWGG	2 cut(s)	137, 214
BstSCI	CCNGG	4 cut(s)	32, 135, 212, 261
BstUI	CGCG	3 cut(s)	122, 231, 233
BstV1I	GCAGC	5 cut(s)	215, 218, 289, 331, 344
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BstZI	CGGCCG	1 cut(s)	323
BsuRI	GGCC	4 cut(s)	57, 162, 251, 325
BtgI	CCRYGG	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	258
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	339
Cac8I	GCNNGC	3 cut(s)	238, 342, 373
CfoI	GCGC	1 cut(s)	233
Cfr10I	RCCGGY	1 cut(s)	371
Cfr13I	GGNCC	4 cut(s)	133, 161, 265, 328
Cfr42I	CCGCGG	1 cut(s)	123
CpoI	CGGWCCG	1 cut(s)	265
CseI	GACGC	2 cut(s)	209, 237
CspI	CGGWCCG	1 cut(s)	265
CviAII	CATG	2 cut(s)	59, 187
DpnI	GATC	3 cut(s)	66, 283, 299
DpnII	GATC	3 cut(s)	64, 281, 297
EaeI	YGGCCR	2 cut(s)	55, 323
EagI	CGGCCG	1 cut(s)	323
EclXI	CGGCCG	1 cut(s)	323
Eco47I	GGWCC	3 cut(s)	133, 265, 328
Eco52I	CGGCCG	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	133
EcoRII	CCWGG	2 cut(s)	135, 212
FaeI	CATG	2 cut(s)	62, 190
FaiI	YATR	3 cut(s)	8, 60, 188
FatI	CATG	2 cut(s)	58, 186
FauI	CCCGC	1 cut(s)	115
FblI	GTMKAC	1 cut(s)	93
FokI	GGATG	1 cut(s)	245
GlaI	GCGC	1 cut(s)	232
HaeIII	GGCC	4 cut(s)	57, 162, 251, 325
HapII	CCGG	5 cut(s)	34, 252, 263, 326, 372
HgaI	GACGC	2 cut(s)	209, 237
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	2 cut(s)	62, 190
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HincII	GTYRAC	2 cut(s)	94, 199
HindII	GTYRAC	2 cut(s)	94, 199
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	2 cut(s)	126, 377
HpaII	CCGG	5 cut(s)	34, 252, 263, 326, 372
Hpy166II	GTNNAC	2 cut(s)	94, 199
Hpy188I	TCNGA	1 cut(s)	292
Hpy8I	GTNNAC	2 cut(s)	94, 199
Hpy99I	CGWCG	4 cut(s)	56, 98, 231, 371
HpyCH4III	ACNGT	2 cut(s)	98, 269
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	5 cut(s)	240, 308, 334, 340, 360
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 237, 331
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	2 cut(s)	62, 190
HspAI	GCGC	1 cut(s)	231
KroI	GCCGGC	1 cut(s)	371
KroNI	GCCGGC	1 cut(s)	373
KspI	CCGCGG	1 cut(s)	123
Kzo9I	GATC	3 cut(s)	64, 281, 297
LmnI	GCTCC	1 cut(s)	149
Lsp1109I	GCAGC	5 cut(s)	215, 218, 289, 331, 344
LweI	GCATC	1 cut(s)	267
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	3 cut(s)	66, 283, 299
MboI	GATC	3 cut(s)	64, 281, 297
MboII	GAAGA	1 cut(s)	74
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	154
MlyI	GAGTC	2 cut(s)	135, 371
MmeI	TCCRAC	1 cut(s)	121
MreI	CGCCGGCG	1 cut(s)	371
MroNI	GCCGGC	1 cut(s)	371
MslI	CAYNNNNRTG	1 cut(s)	185
MspA1I	CMGCKG	3 cut(s)	122, 175, 322
MspI	CCGG	5 cut(s)	34, 252, 263, 326, 372
MspR9I	CCNGG	4 cut(s)	34, 137, 214, 263
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	2 cut(s)	137, 214
MvnI	CGCG	3 cut(s)	122, 231, 233
MwoI	GCNNNNNNNGC	3 cut(s)	223, 237, 331
NaeI	GCCGGC	1 cut(s)	373
NciI	CCSGG	2 cut(s)	34, 263
NdeII	GATC	3 cut(s)	64, 281, 297
NgoMIV	GCCGGC	1 cut(s)	371
NlaIII	CATG	2 cut(s)	62, 190
NmuCI	GTSAC	1 cut(s)	10
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PctI	GAATGC	1 cut(s)	34
PdiI	GCCGGC	1 cut(s)	373
PfoI	TCCNGGA	1 cut(s)	261
Ple19I	CGATCG	1 cut(s)	284
PleI	GAGTC	2 cut(s)	134, 371
PpsI	GAGTC	2 cut(s)	134, 371
PpuMI	RGGWCCY	1 cut(s)	133
Psp5II	RGGWCCY	1 cut(s)	133
Psp6I	CCWGG	2 cut(s)	135, 212
PspGI	CCWGG	2 cut(s)	135, 212
PspPI	GGNCC	4 cut(s)	133, 161, 265, 328
PspPPI	RGGWCCY	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	64
PvuI	CGATCG	1 cut(s)	284
PvuII	CAGCTG	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	185
Rsr2I	CGGWCCG	1 cut(s)	265
RsrII	CGGWCCG	1 cut(s)	265
SacII	CCGCGG	1 cut(s)	123
SalI	GTCGAC	1 cut(s)	92
Sau3AI	GATC	3 cut(s)	64, 281, 297
Sau96I	GGNCC	4 cut(s)	133, 161, 265, 328
SchI	GAGTC	2 cut(s)	135, 371
ScrFI	CCNGG	4 cut(s)	34, 137, 214, 263
SduI	GDGCHC	1 cut(s)	154
SfaNI	GCATC	1 cut(s)	267
Sfr303I	CCGCGG	1 cut(s)	123
SgrAI	CRCCGGYG	1 cut(s)	371
SgrBI	CCGCGG	1 cut(s)	123
SinI	GGWCC	3 cut(s)	133, 265, 328
SmiMI	CAYNNNNRTG	1 cut(s)	185
SsiI	CCGC	6 cut(s)	104, 120, 122, 217, 233, 322
StyD4I	CCNGG	4 cut(s)	32, 135, 212, 261
TaaI	ACNGT	2 cut(s)	98, 269
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	6 cut(s)	51, 81, 93, 129, 284, 300
TauI	GCSGC	5 cut(s)	107, 122, 220, 236, 325
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	5 cut(s)	203, 206, 277, 319, 357
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	187
VpaK11BI	GGWCC	3 cut(s)	133, 265, 328
XmiI	GTMKAC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.