Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011519

Physical Location & Seq

Genomic Coordinates Reverse (-)

24265290 .. 24290983

Gene Structure 25694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0166800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGGGAGAGGCAAGATTGTGATCCGAAGGATTGACAATTCGACGAGCAGACAAGTGACGTTTTCCAAGCGAAGAAATGGGCTGCTGAAGAAGGCTAAGGAGCTTTCAGTCCTTTGTGATGCTGAGGTTGGATTGATCATCTTCTCCAGCACCGGCAGGCTCTATGATTATGCTAGCACTAGCATGAAATCAGTTATTGATCGCTATAAAAAGCTCAAAGAGGAACATCACCAACTGTTGAATCCTGCTTCTGAAGTCAAGTTTTGGGAAAGGGAGGCAGCAAGCTTGAGACAACAATTGCAGTACTTGCAAGAATGCCACAGGCAATTGATGGGTGAAGAACTATCTGGTTTGAGCACCAAAGATCTACAGAACCTGGAAAGCAAACTGGAGAGGAGTTTGAAAGGTGTCCGGTTGAAAAAGGAACAGATATTAAATGAAGAAATAAAAGACCTGAGCCAGAAGGGAAATCTCATACATCAAGAGAACATAGAACTGTATAAGAAGCTAGACGTCATAGGTAAAGAGAATGTGGAACTCCAAAGAAAGGCCTATGGAGCAAGGAATGTGAATGAAGAAAACGAAAGCTCCGAACGTTCGTTTACCATTACTAATGGATATCAATTGCATACACCCATCCATCTGCAGCTAAGCCAGCCACAGAATCAAACTGAGCCTCAGCCTCAGAACAATGTACCAGCAAATGCAATCAAACTAGGATTGCATCTGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

244

Amino Acids

28.1

Weight (kDa)

9.28

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.2e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	83 - 170	5.6e-25	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05971 FvH4_5g36542
rosa_multiflora	Rmu_sc0000239.1_g000102 Rmu_sc0001625.1_g000001 Rmu_sc0002231.1_g000005 Rmu_sc0002895.1_g000015 Rmu_sc0006475.1_g000013 Rmu_sc0014815.1_g000005
rosa_roxburghii	Rroxscaffold_7G00195640
rosa_rugosa	Rorug04G0231200 Rorug06G0166800
rosa_samantha	Rh2AG509200 Rh2AG509500 Rh2BG520600 Rh2BG520700 Rh4BG442100 Rh5BG389700 Rh6CG192000 Rh6CG198800
rosa_wichuraiana	Rw6G016360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	516
AclI	AACGTT	1 cut(s)	595
AclWI	GGATC	1 cut(s)	16
AcuI	CTGAAG	2 cut(s)	107, 273
AcyI	GRCGYC	1 cut(s)	513
AfaI	GTAC	2 cut(s)	305, 696
AfiI	CCNNNNNNNGG	1 cut(s)	547
AgsI	TTSAA	3 cut(s)	241, 403, 418
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	6 cut(s)	103, 214, 285, 508, 588, 649
AluI	AGCT	6 cut(s)	103, 214, 285, 508, 588, 649
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	1 cut(s)	283
AlwI	GGATC	1 cut(s)	16
AlwNI	CAGNNNCTG	1 cut(s)	376
AoxI	GGCC	1 cut(s)	549
ApeKI	GCWGC	3 cut(s)	82, 278, 646
AsuHPI	GGTGA	2 cut(s)	221, 347
AsuNHI	GCTAGC	1 cut(s)	173
Bbv12I	GWGCWC	1 cut(s)	359
BbvCI	CCTCAGC	2 cut(s)	123, 678
BbvI	GCAGC	3 cut(s)	69, 290, 658
BccI	CCATC	3 cut(s)	325, 644, 648
BciT130I	CCWGG	1 cut(s)	377
BclI	TGATCA	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	5 cut(s)	174, 180, 509, 716, 733
BfmI	CTRYAG	2 cut(s)	368, 644
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	3 cut(s)	83, 279, 647
BlpI	GCTNAGC	1 cut(s)	650
BlsI	GCNGC	3 cut(s)	84, 280, 648
BmcAI	AGTACT	1 cut(s)	305
Bme1390I	CCNGG	1 cut(s)	377
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	1 cut(s)	109
BmtI	GCTAGC	1 cut(s)	177
BpmI	CTGGAG	2 cut(s)	130, 410
Bpu10I	CCTNAGC	4 cut(s)	96, 123, 455, 678
Bpu1102I	GCTNAGC	1 cut(s)	650
BpuEI	CTTGAG	1 cut(s)	307
BsaBI	GATNNNNATC	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	513
BsaWI	WCCGGW	1 cut(s)	411
BsaXI	ACNNNNNCTCC	2 cut(s)	572, 602
Bsc4I	CCNNNNNNNGG	1 cut(s)	547
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	393
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	377
BseGI	GGATG	1 cut(s)	636
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	547
BseMII	CTCAG	5 cut(s)	114, 446, 663, 692, 698
BseNI	ACTGG	1 cut(s)	393
BseRI	GAGGAG	1 cut(s)	409
BseXI	GCAGC	3 cut(s)	69, 290, 658
BsgI	GTGCAG	1 cut(s)	713
BshFI	GGCC	1 cut(s)	551
BsiHKAI	GWGCWC	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	153, 412
BslI	CCNNNNNNNGG	1 cut(s)	547
BsmAI	GTCTC	1 cut(s)	283
BsmI	GAATGC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	551
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp143I	GATC	4 cut(s)	21, 135, 199, 364
Bsp1720I	GCTNAGC	1 cut(s)	650
BspANI	GGCC	1 cut(s)	551
BspCNI	CTCAG	5 cut(s)	115, 447, 664, 691, 697
BspMAI	CTGCAG	1 cut(s)	648
BspOI	GCTAGC	1 cut(s)	177
BspPI	GGATC	1 cut(s)	16
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	393
BssAI	RCCGGY	1 cut(s)	152
BssMI	GATC	4 cut(s)	21, 135, 199, 364
BssNI	GRCGYC	1 cut(s)	513
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	2 cut(s)	237, 498
BstACI	GRCGYC	1 cut(s)	513
BstAPI	GCANNNNNTGC	1 cut(s)	307
BstC8I	GCNNGC	4 cut(s)	158, 175, 283, 656
BstDEI	CTNAG	7 cut(s)	96, 123, 455, 650, 672, 678, 684
BstF5I	GGATG	1 cut(s)	636
BstKTI	GATC	4 cut(s)	24, 138, 202, 367
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	4 cut(s)	21, 135, 199, 364
BstMWI	GCNNNNNNNGC	3 cut(s)	307, 557, 655
BstNI	CCWGG	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	375
BstSFI	CTRYAG	2 cut(s)	368, 644
BstV1I	GCAGC	3 cut(s)	69, 290, 658
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuRI	GGCC	1 cut(s)	551
BtsCI	GGATG	1 cut(s)	636
Cac8I	GCNNGC	4 cut(s)	158, 175, 283, 656
CaiI	CAGNNNCTG	1 cut(s)	376
Cfr10I	RCCGGY	1 cut(s)	152
Csp6I	GTAC	2 cut(s)	304, 695
CviAII	CATG	1 cut(s)	184
CviQI	GTAC	2 cut(s)	304, 695
DdeI	CTNAG	7 cut(s)	96, 123, 455, 650, 672, 678, 684
DpnI	GATC	4 cut(s)	23, 137, 201, 366
DpnII	GATC	4 cut(s)	21, 135, 199, 364
Eco147I	AGGCCT	1 cut(s)	551
Eco32I	GATATC	1 cut(s)	620
Eco57I	CTGAAG	2 cut(s)	107, 273
EcoRII	CCWGG	1 cut(s)	375
EcoRV	GATATC	1 cut(s)	620
FaeI	CATG	1 cut(s)	187
FatI	CATG	1 cut(s)	183
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	83, 279, 647
FokI	GGATG	1 cut(s)	623
Fsp4HI	GCNGC	3 cut(s)	83, 279, 647
FspBI	CTAG	5 cut(s)	174, 180, 509, 716, 733
GluI	GCNGC	3 cut(s)	83, 279, 647
GsuI	CTGGAG	2 cut(s)	130, 410
HaeIII	GGCC	1 cut(s)	551
HapII	CCGG	2 cut(s)	153, 412
Hin1I	GRCGYC	1 cut(s)	513
Hin1II	CATG	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	283
HinfI	GANTC	2 cut(s)	241, 664
HpaII	CCGG	2 cut(s)	153, 412
HphI	GGTGA	2 cut(s)	221, 347
Hpy166II	GTNNAC	1 cut(s)	603
Hpy188I	TCNGA	4 cut(s)	26, 253, 592, 687
Hpy188III	TCNNGA	1 cut(s)	482
Hpy8I	GTNNAC	1 cut(s)	603
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	3 cut(s)	21, 85, 457
HpyCH4III	ACNGT	2 cut(s)	237, 498
HpyCH4IV	ACGT	3 cut(s)	59, 513, 595
HpyCH4V	TGCA	7 cut(s)	301, 310, 628, 646, 707, 724, 730
HpyF10VI	GCNNNNNNNGC	3 cut(s)	307, 557, 655
HpyF3I	CTNAG	7 cut(s)	96, 123, 455, 650, 672, 678, 684
HpySE526I	ACGT	3 cut(s)	59, 513, 595
Hsp92I	GRCGYC	1 cut(s)	513
Hsp92II	CATG	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	4 cut(s)	21, 135, 199, 364
LmnI	GCTCC	3 cut(s)	100, 557, 593
Lsp1109I	GCAGC	3 cut(s)	69, 290, 658
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	5 cut(s)	174, 180, 509, 716, 733
MaeII	ACGT	3 cut(s)	59, 513, 595
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	4 cut(s)	23, 137, 201, 366
MboI	GATC	4 cut(s)	21, 135, 199, 364
MboII	GAAGA	6 cut(s)	84, 100, 133, 350, 452, 587
MfeI	CAATTG	3 cut(s)	296, 326, 623
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	359
MluCI	AATT	4 cut(s)	37, 296, 326, 623
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	6 cut(s)	118, 214, 268, 387, 687, 693
MseI	TTAA	1 cut(s)	434
MslI	CAYNNNNRTG	1 cut(s)	182
MspI	CCGG	2 cut(s)	153, 412
MspR9I	CCNGG	1 cut(s)	377
MunI	CAATTG	3 cut(s)	296, 326, 623
Mva1269I	GAATGC	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	3 cut(s)	307, 557, 655
NdeII	GATC	4 cut(s)	21, 135, 199, 364
NheI	GCTAGC	1 cut(s)	173
NlaIII	CATG	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	55
PceI	AGGCCT	1 cut(s)	551
PcsI	WCGNNNNNNNCGW	1 cut(s)	588
PctI	GAATGC	1 cut(s)	320
PfeI	GAWTC	2 cut(s)	241, 664
PkrI	GCNGC	3 cut(s)	84, 280, 648
Psp1406I	AACGTT	1 cut(s)	595
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PstI	CTGCAG	1 cut(s)	648
PstNI	CAGNNNCTG	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	2 cut(s)	305, 696
RsaNI	GTAC	2 cut(s)	304, 695
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	434
SatI	GCNGC	3 cut(s)	83, 279, 647
Sau3AI	GATC	4 cut(s)	21, 135, 199, 364
ScaI	AGTACT	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	1 cut(s)	359
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	2 cut(s)	368, 644
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
Sse9I	AATT	4 cut(s)	37, 296, 326, 623
SseBI	AGGCCT	1 cut(s)	551
SspMI	CTAG	5 cut(s)	174, 180, 509, 716, 733
StuI	AGGCCT	1 cut(s)	551
StyD4I	CCNGG	1 cut(s)	375
TaaI	ACNGT	2 cut(s)	237, 498
TaiI	ACGT	3 cut(s)	62, 516, 598
TaqI	TCGA	1 cut(s)	41
TasI	AATT	4 cut(s)	37, 296, 326, 623
TatI	WGTACW	1 cut(s)	303
TfiI	GAWTC	2 cut(s)	241, 664
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	82, 278, 646
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	200, 453, 588
XspI	CTAG	5 cut(s)	174, 180, 509, 716, 733
ZraI	GACGTC	1 cut(s)	514
ZrmI	AGTACT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.