FvH4_5g36542

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011519
Physical Location & Seq
Reverse (-)
26806312 .. 26806774
463 bp
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UTR
Exon/CDS
Intron
FvH4_5g36542.t1

Sequence Viewer

Length: 246 bp
ATGTCGACACAGATTTTAATTATTCTTCTTCTTACAGTAGAGTTGTTCTTCTCGCGGGTTCAAGGCGAAGCGCATTTCTATGATTTTGTAGTCAGGGACCGCAACTTTACCAGGTTATGTGAAACAAAGAGCATGTTGGTTGTAAATGATCGTTTCCCAGGCCCAGAGATACGAGTTCATAAAGGAGATACGGTTTATGTTAATGTTCAAAATCAAGGTAGCTACGGTTTGACAATTCACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

82

Amino Acids

9.46

Weight (kDa)

6.82

Isoelectric Point (pI)

27.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 31 - 81 3.2e-12 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 55
AciI CCGC 2 cut(s) 55, 100
AgsI TTSAA 2 cut(s) 62, 209
AjnI CCWGG 2 cut(s) 110, 157
AluBI AGCT 1 cut(s) 222
AluI AGCT 1 cut(s) 222
AoxI GGCC 1 cut(s) 160
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 2 cut(s) 97, 161
AvaII GGWCC 1 cut(s) 97
BciT130I CCWGG 2 cut(s) 112, 159
Bme1390I CCNGG 2 cut(s) 112, 159
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 2 cut(s) 97, 161
BmiI GGNNCC 1 cut(s) 98
BmrFI CCNGG 2 cut(s) 112, 159
BsaJI CCNNGG 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bse1I ACTGG 1 cut(s) 245
BseBI CCWGG 2 cut(s) 112, 159
BseDI CCNNGG 1 cut(s) 157
BseNI ACTGG 1 cut(s) 245
Bsh1236I CGCG 1 cut(s) 55
BshFI GGCC 1 cut(s) 162
BslFI GGGAC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 1 cut(s) 162
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 2 cut(s) 55, 100
BspANI GGCC 1 cut(s) 162
BspFNI CGCG 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 98
BsrI ACTGG 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 1 cut(s) 148
Bst2UI CCWGG 2 cut(s) 112, 159
Bst4CI ACNGT 3 cut(s) 37, 193, 227
BstFNI CGCG 1 cut(s) 55
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 1 cut(s) 151
BstMBI GATC 1 cut(s) 148
BstNI CCWGG 2 cut(s) 112, 159
BstNSI RCATGY 1 cut(s) 136
BstSCI CCNGG 2 cut(s) 110, 157
BstUI CGCG 1 cut(s) 55
BsuRI GGCC 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 238
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 97, 161
CsiI ACCWGGT 1 cut(s) 110
CviAII CATG 1 cut(s) 133
CviJI RGCY 2 cut(s) 162, 222
CviKI_1 RGCY 2 cut(s) 162, 222
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 97
EcoRII CCWGG 2 cut(s) 110, 157
FaeI CATG 1 cut(s) 136
FaiI YATR 5 cut(s) 81, 118, 134, 180, 198
FaqI GGGAC 1 cut(s) 110
FatI CATG 1 cut(s) 132
FauI CCCGC 1 cut(s) 48
FblI GTMKAC 1 cut(s) 5
GlaI GCGC 1 cut(s) 72
HaeIII GGCC 1 cut(s) 162
HhaI GCGC 1 cut(s) 73
Hin1II CATG 1 cut(s) 136
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
Hpy166II GTNNAC 1 cut(s) 6
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4III ACNGT 3 cut(s) 37, 193, 227
Hsp92II CATG 1 cut(s) 136
HspAI GCGC 1 cut(s) 71
Kzo9I GATC 1 cut(s) 148
LpnPI CCDG 7 cut(s) 79, 97, 124, 144, 171, 177, 226
MabI ACCWGGT 1 cut(s) 110
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 3 cut(s) 17, 20, 40
MluCI AATT 2 cut(s) 18, 234
MseI TTAA 2 cut(s) 17, 201
MslI CAYNNNNRTG 1 cut(s) 78
MspR9I CCNGG 2 cut(s) 112, 159
MvaI CCWGG 2 cut(s) 112, 159
MvnI CGCG 1 cut(s) 55
NdeII GATC 1 cut(s) 148
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 1 cut(s) 98
NspI RCATGY 1 cut(s) 136
Psp6I CCWGG 2 cut(s) 110, 157
PspGI CCWGG 2 cut(s) 110, 157
PspN4I GGNNCC 1 cut(s) 98
PspPI GGNCC 2 cut(s) 97, 161
RseI CAYNNNNRTG 1 cut(s) 78
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 17, 201
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 2 cut(s) 97, 161
ScrFI CCNGG 2 cut(s) 112, 159
SetI ASST 3 cut(s) 116, 220, 224
SexAI ACCWGGT 1 cut(s) 110
SinI GGWCC 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 78
Sse9I AATT 2 cut(s) 18, 234
SsiI CCGC 2 cut(s) 55, 100
StyD4I CCNGG 2 cut(s) 110, 157
TaaI ACNGT 3 cut(s) 37, 193, 227
TaqI TCGA 1 cut(s) 5
TasI AATT 2 cut(s) 18, 234
Tru1I TTAA 2 cut(s) 17, 201
Tru9I TTAA 2 cut(s) 17, 201
TscAI CASTG 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 167
TspRI CASTG 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 97
XceI RCATGY 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.