Rmu_sc0014815.1_g000005

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014815.1
OG0011519
Physical Location & Seq
Reverse (-)
7827 .. 8550
724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014815.1_g000005.1.cds

Sequence Viewer

Length: 438 bp
atgatatcccgaaagactatttctccgttaacgaagattttagggtttctttctcttactattctgttcttgttggtggttcatggcgaggtgcatcactatgaatttgttgttagggagaagaacttcactcggctatgtgaaacaaaaagcatgctagtcgtaaacgacaactttccaggtccggagatacgagttcgcaaaggagacacggtttatgtaaatgttcataaccaaggatattacgcagcaacttccaagcagcgacggcggcgcgcggcttgcaggagggaggccggaggcatcctgaaccgttctgggcagctatcgaggtcagaggagatcgaggttgcacgttctgggcagcagccggacctgcaactgcaaagttttgggcaacgccgcaacctcgccgccagtgactccacccgactgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

145

Amino Acids

16.5

Weight (kDa)

10.32

Isoelectric Point (pI)

76.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 384
AccII CGCG 2 cut(s) 276, 278
AccIII TCCGGA 1 cut(s) 184
AciI CCGC 4 cut(s) 271, 278, 403, 414
AcsI RAATTY 1 cut(s) 104
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 1 cut(s) 325
AluI AGCT 1 cut(s) 325
Alw26I GTCTC 1 cut(s) 201
Aor13HI TCCGGA 1 cut(s) 184
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 5 cut(s) 248, 262, 322, 364, 367
ApoI RAATTY 1 cut(s) 104
Asp700I GAANNNNTTC 1 cut(s) 125
AspLEI GCGC 2 cut(s) 276, 278
AspS9I GGNCC 2 cut(s) 182, 373
AvaII GGWCC 2 cut(s) 182, 373
BbvI GCAGC 5 cut(s) 260, 274, 334, 376, 379
BceAI ACGGC 1 cut(s) 284
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BciT130I CCWGG 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 1 cut(s) 158
BfmI CTRYAG 1 cut(s) 434
BfuAI ACCTGC 1 cut(s) 384
BisI GCNGC 9 cut(s) 249, 263, 272, 279, 323, 365, 368, 403, 414
BlsI GCNGC 9 cut(s) 250, 264, 273, 280, 324, 366, 369, 404, 415
Bme1390I CCNGG 1 cut(s) 180
Bme18I GGWCC 2 cut(s) 182, 373
BmgT120I GGNCC 2 cut(s) 182, 373
BmrFI CCNGG 1 cut(s) 180
BmsI GCATC 2 cut(s) 103, 312
BsaJI CCNNGG 1 cut(s) 235
BsaWI WCCGGW 1 cut(s) 184
BsaXI ACNNNNNCTCC 4 cut(s) 7, 37, 198, 228
Bse1I ACTGG 1 cut(s) 417
BseAI TCCGGA 1 cut(s) 184
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 1 cut(s) 303
BseNI ACTGG 1 cut(s) 417
BsePI GCGCGC 1 cut(s) 274
BseRI GAGGAG 1 cut(s) 353
BseXI GCAGC 5 cut(s) 260, 274, 334, 376, 379
Bsh1236I CGCG 2 cut(s) 276, 278
BshFI GGCC 1 cut(s) 296
BsiSI CCGG 3 cut(s) 185, 297, 371
BsmAI GTCTC 1 cut(s) 201
BsnI GGCC 1 cut(s) 296
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 1 cut(s) 342
BspACI CCGC 4 cut(s) 271, 278, 403, 414
BspANI GGCC 1 cut(s) 296
BspEI TCCGGA 1 cut(s) 184
BspFNI CGCG 2 cut(s) 276, 278
BspMI ACCTGC 1 cut(s) 384
BsrI ACTGG 1 cut(s) 417
BssECI CCNNGG 1 cut(s) 235
BssHII GCGCGC 1 cut(s) 274
BssMI GATC 1 cut(s) 342
BssT1I CCWWGG 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 3 cut(s) 214, 314, 435
BstC8I GCNNGC 3 cut(s) 155, 276, 283
BstF5I GGATG 1 cut(s) 303
BstFNI CGCG 2 cut(s) 276, 278
BstHHI GCGC 2 cut(s) 276, 278
BstKTI GATC 1 cut(s) 345
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 1 cut(s) 342
BstMWI GCNNNNNNNGC 4 cut(s) 268, 271, 282, 376
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 178
BstSFI CTRYAG 1 cut(s) 434
BstUI CGCG 2 cut(s) 276, 278
BstV1I GCAGC 5 cut(s) 260, 274, 334, 376, 379
BsuRI GGCC 1 cut(s) 296
BtsCI GGATG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 424
BveI ACCTGC 1 cut(s) 384
Cac8I GCNNGC 3 cut(s) 155, 276, 283
CfoI GCGC 2 cut(s) 276, 278
Cfr13I GGNCC 2 cut(s) 182, 373
CviAII CATG 2 cut(s) 83, 154
CviJI RGCY 5 cut(s) 136, 281, 296, 325, 370
CviKI_1 RGCY 5 cut(s) 136, 281, 296, 325, 370
DpnI GATC 1 cut(s) 344
DpnII GATC 1 cut(s) 342
Eco130I CCWWGG 1 cut(s) 235
Eco32I GATATC 1 cut(s) 6
Eco47I GGWCC 2 cut(s) 182, 373
EcoRII CCWGG 1 cut(s) 178
EcoRV GATATC 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 2 cut(s) 86, 157
FaiI YATR 6 cut(s) 84, 102, 139, 155, 219, 231
FatI CATG 2 cut(s) 82, 153
Fnu4HI GCNGC 9 cut(s) 249, 263, 272, 279, 323, 365, 368, 403, 414
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 9 cut(s) 249, 263, 272, 279, 323, 365, 368, 403, 414
FspBI CTAG 1 cut(s) 158
GlaI GCGC 2 cut(s) 275, 277
GluI GCNGC 9 cut(s) 249, 263, 272, 279, 323, 365, 368, 403, 414
HaeIII GGCC 1 cut(s) 296
HapII CCGG 3 cut(s) 185, 297, 371
HhaI GCGC 2 cut(s) 276, 278
Hin1II CATG 2 cut(s) 86, 157
Hin6I GCGC 2 cut(s) 274, 276
HinP1I GCGC 2 cut(s) 274, 276
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 1 cut(s) 422
HpaI GTTAAC 1 cut(s) 30
HpaII CCGG 3 cut(s) 185, 297, 371
Hpy166II GTNNAC 2 cut(s) 30, 166
Hpy188I TCNGA 1 cut(s) 337
Hpy188III TCNNGA 3 cut(s) 9, 185, 307
Hpy8I GTNNAC 2 cut(s) 30, 166
Hpy99I CGWCG 1 cut(s) 270
HpyCH4III ACNGT 3 cut(s) 214, 314, 435
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 5 cut(s) 94, 285, 353, 379, 385
HpyF10VI GCNNNNNNNGC 4 cut(s) 268, 271, 282, 376
HpySE526I ACGT 1 cut(s) 355
Hsp92II CATG 2 cut(s) 86, 157
HspAI GCGC 2 cut(s) 274, 276
Kpn2I TCCGGA 1 cut(s) 184
KspAI GTTAAC 1 cut(s) 30
Kzo9I GATC 1 cut(s) 342
Lsp1109I GCAGC 5 cut(s) 260, 274, 334, 376, 379
LweI GCATC 2 cut(s) 103, 312
MaeI CTAG 1 cut(s) 158
MaeII ACGT 1 cut(s) 355
MaeIII GTNAC 1 cut(s) 419
MalI GATC 1 cut(s) 344
MboI GATC 1 cut(s) 342
MboII GAAGA 2 cut(s) 46, 133
MluCI AATT 1 cut(s) 104
MlyI GAGTC 1 cut(s) 416
MnlI CCTC 8 cut(s) 82, 282, 286, 293, 324, 331, 340, 419
MroI TCCGGA 1 cut(s) 184
MroXI GAANNNNTTC 1 cut(s) 125
MseI TTAA 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 99
MspI CCGG 3 cut(s) 185, 297, 371
MspR9I CCNGG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 180
MvnI CGCG 2 cut(s) 276, 278
MwoI GCNNNNNNNGC 4 cut(s) 268, 271, 282, 376
NdeII GATC 1 cut(s) 342
NlaIII CATG 2 cut(s) 86, 157
NmeAIII GCCGAG 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 419
NspI RCATGY 1 cut(s) 157
PaeI GCATGC 1 cut(s) 157
PauI GCGCGC 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 125
PkrI GCNGC 9 cut(s) 250, 264, 273, 280, 324, 366, 369, 404, 415
PleI GAGTC 1 cut(s) 416
PpsI GAGTC 1 cut(s) 416
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspPI GGNCC 2 cut(s) 182, 373
PteI GCGCGC 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 9 cut(s) 249, 263, 272, 279, 323, 365, 368, 403, 414
Sau3AI GATC 1 cut(s) 342
Sau96I GGNCC 2 cut(s) 182, 373
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 1 cut(s) 180
SetI ASST 8 cut(s) 93, 184, 327, 335, 351, 358, 378, 411
SfaNI GCATC 2 cut(s) 103, 312
SfcI CTRYAG 1 cut(s) 434
SinI GGWCC 2 cut(s) 182, 373
SmiMI CAYNNNNRTG 1 cut(s) 99
SphI GCATGC 1 cut(s) 157
Sse9I AATT 1 cut(s) 104
SsiI CCGC 4 cut(s) 271, 278, 403, 414
SspMI CTAG 1 cut(s) 158
StyD4I CCNGG 1 cut(s) 178
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 3 cut(s) 214, 314, 435
TaiI ACGT 1 cut(s) 358
TaqI TCGA 2 cut(s) 329, 345
TasI AATT 1 cut(s) 104
TauI GCSGC 4 cut(s) 274, 281, 405, 416
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 1 cut(s) 419
TseI GCWGC 5 cut(s) 248, 262, 322, 364, 367
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 3 cut(s) 71, 117, 218
TspGWI ACGGA 1 cut(s) 15
TspRI CASTG 1 cut(s) 424
VpaK11BI GGWCC 2 cut(s) 182, 373
XapI RAATTY 1 cut(s) 104
XceI RCATGY 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 125
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.