Rh5BG389700

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011519
Physical Location & Seq
Forward (+)
62364261 .. 62365286
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG389700.1

Sequence Viewer

Length: 258 bp
ATGGGGATGGGTATGTTCCCTGCAGGTTTTCTGGTTTGGTTGCTTCTATGTGGGTTGCTCCTTTATATAGTTGATGGAAATGTCCATTATTACGAATTTGTTGTGATGGAGACCAACTTTACAAGGTTATGTACCACTAAGAGCATGCTTGTAGTGAATGAAACTTTTCCGGGGCCAGTTATTCGTGTACAAAAAGGAGATATAGTTTATGTCAACGTCAAAAACCAAGGAGATTATGGACTTAATATTCACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

85

Amino Acids

9.69

Weight (kDa)

6.0

Isoelectric Point (pI)

25.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 36 - 85 9.7e-11 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 14
AcsI RAATTY 1 cut(s) 95
AfaI GTAC 2 cut(s) 133, 189
Alw26I GTCTC 1 cut(s) 104
AoxI GGCC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 95
Asp700I GAANNNNTTC 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 173
AsuC2I CCSGG 1 cut(s) 171
BccI CCATC 2 cut(s) 68, 100
BcnI CCSGG 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 104
BfmI CTRYAG 1 cut(s) 21
BfuAI ACCTGC 1 cut(s) 14
Bme1390I CCNGG 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 171
BpuMI CCSGG 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 170, 226
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bse1I ACTGG 2 cut(s) 176, 257
BseDI CCNNGG 2 cut(s) 170, 226
BseGI GGATG 1 cut(s) 12
BseNI ACTGG 2 cut(s) 176, 257
BshFI GGCC 1 cut(s) 175
BsiSI CCGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 104
BsnI GGCC 1 cut(s) 175
Bso31I GGTCTC 1 cut(s) 104
Bsp1407I TGTACA 1 cut(s) 187
BspANI GGCC 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 174
BspMAI CTGCAG 1 cut(s) 25
BspMI ACCTGC 1 cut(s) 14
BspTNI GGTCTC 1 cut(s) 104
BsrGI TGTACA 1 cut(s) 187
BsrI ACTGG 2 cut(s) 176, 257
BssECI CCNNGG 2 cut(s) 170, 226
BssT1I CCWWGG 1 cut(s) 226
BstAUI TGTACA 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 146
BstDEI CTNAG 1 cut(s) 138
BstF5I GGATG 1 cut(s) 12
BstMAI GTCTC 1 cut(s) 104
BstNSI RCATGY 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 169
BstSFI CTRYAG 1 cut(s) 21
BsuRI GGCC 1 cut(s) 175
BtsCI GGATG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 250
BveI ACCTGC 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 173
Csp6I GTAC 2 cut(s) 132, 188
CviAII CATG 1 cut(s) 145
CviJI RGCY 1 cut(s) 175
CviKI_1 RGCY 1 cut(s) 175
CviQI GTAC 2 cut(s) 132, 188
DdeI CTNAG 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 226
Eco31I GGTCTC 1 cut(s) 104
EcoT14I CCWWGG 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 226
FaeI CATG 1 cut(s) 148
FaiI YATR 9 cut(s) 14, 49, 66, 68, 130, 146, 203, 210, 237
FatI CATG 1 cut(s) 144
FokI GGATG 1 cut(s) 19
HaeIII GGCC 1 cut(s) 175
HapII CCGG 1 cut(s) 170
Hin1II CATG 1 cut(s) 148
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HpaII CCGG 1 cut(s) 170
Hpy166II GTNNAC 2 cut(s) 188, 214
Hpy8I GTNNAC 2 cut(s) 188, 214
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 138
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 1 cut(s) 148
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 6 cut(s) 9, 17, 33, 183, 189, 238
MaeII ACGT 1 cut(s) 216
MluCI AATT 1 cut(s) 95
MroXI GAANNNNTTC 1 cut(s) 165
MseI TTAA 1 cut(s) 243
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 171
NciI CCSGG 1 cut(s) 171
NlaIII CATG 1 cut(s) 148
NlaIV GGNNCC 1 cut(s) 174
NspI RCATGY 1 cut(s) 148
PaeI GCATGC 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 174
PspPI GGNCC 1 cut(s) 173
PstI CTGCAG 1 cut(s) 25
RsaI GTAC 2 cut(s) 133, 189
RsaNI GTAC 2 cut(s) 132, 188
SaqAI TTAA 1 cut(s) 243
Sau96I GGNCC 1 cut(s) 173
SbfI CCTGCAGG 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 171
SdaI CCTGCAGG 1 cut(s) 25
SetI ASST 3 cut(s) 28, 128, 219
SfcI CTRYAG 1 cut(s) 21
SphI GCATGC 1 cut(s) 148
Sse8387I CCTGCAGG 1 cut(s) 25
Sse9I AATT 1 cut(s) 95
SspI AATATT 1 cut(s) 247
StyD4I CCNGG 1 cut(s) 169
StyI CCWWGG 1 cut(s) 226
TaiI ACGT 1 cut(s) 219
TasI AATT 1 cut(s) 95
TatI WGTACW 1 cut(s) 187
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 1 cut(s) 257
XapI RAATTY 1 cut(s) 95
XceI RCATGY 1 cut(s) 148
XcmI CCANNNNNNNNNTGG 1 cut(s) 233
XmnI GAANNNNTTC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.