Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005897

Physical Location & Seq

Genomic Coordinates Reverse (-)

6058334 .. 6059333

Gene Structure 1000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g07361.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGAGAAGGAGAAAGCTGTCGTAAATATACCATCTGGTGGGCAAGGCAGCGATCTTGATGAGAAACAGTTACAGCTAAACGATCCCTGCGCTAAGTCCAAGTTCGAAAGCCTACCCGGACTCGTCGTACTTGCCATGCTTAAGAGTATTACTATTACATCCCCCCACAAACAGTTTGAAGACTCTTTTCTAAGAAGGCATGATGAGGATTATAAAGACAAGAAGGACCATGAGAATATCTTGTTCACGTTAGGTTACCTTATCTTTATTGCTGCCCCGTTGGCCTTTCCGGCTACAAGAAATGCAACCGGCCCAATTGTTGTCATTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

12.18

Weight (kDa)

5.87

Isoelectric Point (pI)

54.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005897)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07361 FvH4_2g26761 FvH4_3g06550 FvH4_3g23920 FvH4_6g40672 FvH4_6g40673
rosa_laevigata	RLG00000031929 RLG00000031940 RLG00000031942 RLG00000031943
rosa_multiflora	Rmu_co8501271.1_g000001 Rmu_sc0002639.1_g000011 Rmu_sc0003577.1_g000007
rosa_roxburghii	Rroxscaffold_1G00063980 Rroxscaffold_1G00064060
rosa_rugosa	Rorug05G0003000 Rorug05G0003100.1 Rorug05G0003200 Rorug06G0097300 Rorug06G0146800
rosa_samantha	Rh5AG096800 Rh5BG093100 Rh5BG093200 Rh5BG093300 Rh5BG094800 Rh5CG105900 Rh5DG092500
rosa_wichuraiana	Rw5G008480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	213
AccB7I	CCANNNNNTGG	1 cut(s)	38
AclWI	GGATC	1 cut(s)	77
AfaI	GTAC	1 cut(s)	129
AfiI	CCNNNNNNNGG	1 cut(s)	38
AflII	CTTAAG	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	179
AluBI	AGCT	2 cut(s)	17, 76
AluI	AGCT	2 cut(s)	17, 76
AlwI	GGATC	1 cut(s)	77
AoxI	GGCC	2 cut(s)	282, 310
ApeKI	GCWGC	2 cut(s)	48, 272
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	226, 311
AsuC2I	CCSGG	1 cut(s)	117
AsuII	TTCGAA	1 cut(s)	105
AvaII	GGWCC	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	60, 259
BccI	CCATC	1 cut(s)	40
BcnI	CCSGG	1 cut(s)	117
BfrI	CTTAAG	1 cut(s)	140
BglI	GCCNNNNNGGC	2 cut(s)	281, 290
BisI	GCNGC	2 cut(s)	49, 273
BlsI	GCNGC	2 cut(s)	50, 274
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	2 cut(s)	226, 311
BmrFI	CCNGG	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	186
Bpu14I	TTCGAA	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse118I	RCCGGY	1 cut(s)	308
Bse3DI	GCAATG	1 cut(s)	324
BseGI	GGATG	1 cut(s)	158
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMI	GCAATG	1 cut(s)	324
BseXI	GCAGC	2 cut(s)	60, 259
BshFI	GGCC	2 cut(s)	284, 312
BsiSI	CCGG	3 cut(s)	117, 290, 309
BslI	CCNNNNNNNGG	1 cut(s)	38
BsnI	GGCC	2 cut(s)	284, 312
Bsp119I	TTCGAA	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	52, 82
BspANI	GGCC	2 cut(s)	284, 312
BspPI	GGATC	1 cut(s)	77
BspT104I	TTCGAA	1 cut(s)	105
BspTI	CTTAAG	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	324
BsrFI	RCCGGY	1 cut(s)	308
BssAI	RCCGGY	1 cut(s)	308
BssMI	GATC	2 cut(s)	52, 82
Bst4CI	ACNGT	2 cut(s)	69, 174
BstAFI	CTTAAG	1 cut(s)	140
BstBI	TTCGAA	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	93, 191
BstEII	GGTNACC	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	2 cut(s)	55, 85
BstMBI	GATC	2 cut(s)	52, 82
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 290
BstPI	GGTNACC	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	60, 259
BstV2I	GAAGAC	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	284, 312
BtsCI	GGATG	1 cut(s)	158
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	226, 311
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	4 cut(s)	136, 200, 230, 330
CviJI	RGCY	6 cut(s)	17, 76, 111, 284, 293, 312
CviKI_1	RGCY	6 cut(s)	17, 76, 111, 284, 293, 312
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	2 cut(s)	93, 191
DpnI	GATC	2 cut(s)	54, 84
DpnII	GATC	2 cut(s)	52, 82
Eco47I	GGWCC	1 cut(s)	226
Eco91I	GGTNACC	1 cut(s)	254
EcoO65I	GGTNACC	1 cut(s)	254
FaeI	CATG	4 cut(s)	139, 203, 233, 333
FaiI	YATR	6 cut(s)	29, 137, 201, 213, 231, 331
FatI	CATG	4 cut(s)	135, 199, 229, 329
Fnu4HI	GCNGC	2 cut(s)	49, 273
FokI	GGATG	1 cut(s)	145
Fsp4HI	GCNGC	2 cut(s)	49, 273
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	2 cut(s)	49, 273
HaeIII	GGCC	2 cut(s)	284, 312
HapII	CCGG	3 cut(s)	117, 290, 309
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	4 cut(s)	139, 203, 233, 333
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HinfI	GANTC	2 cut(s)	120, 182
HpaII	CCGG	3 cut(s)	117, 290, 309
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	246
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	189, 217
HpyCH4III	ACNGT	2 cut(s)	69, 174
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	2 cut(s)	305, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 290
HpyF3I	CTNAG	2 cut(s)	93, 191
HpySE526I	ACGT	1 cut(s)	248
Hsp92II	CATG	4 cut(s)	139, 203, 233, 333
HspAI	GCGC	1 cut(s)	90
Kzo9I	GATC	2 cut(s)	52, 82
LpnPI	CCDG	5 cut(s)	21, 100, 130, 303, 322
Lsp1109I	GCAGC	2 cut(s)	60, 259
MaeII	ACGT	1 cut(s)	248
MaeIII	GTNAC	2 cut(s)	69, 254
MalI	GATC	2 cut(s)	54, 84
MboI	GATC	2 cut(s)	52, 82
MboII	GAAGA	1 cut(s)	191
MfeI	CAATTG	1 cut(s)	315
MluCI	AATT	1 cut(s)	315
MlyI	GAGTC	2 cut(s)	114, 176
MnlI	CCTC	1 cut(s)	199
MseI	TTAA	1 cut(s)	141
MspCI	CTTAAG	1 cut(s)	140
MspI	CCGG	3 cut(s)	117, 290, 309
MspR9I	CCNGG	1 cut(s)	117
MunI	CAATTG	1 cut(s)	315
MwoI	GCNNNNNNNGC	2 cut(s)	281, 290
NciI	CCSGG	1 cut(s)	117
NdeII	GATC	2 cut(s)	52, 82
NlaIII	CATG	4 cut(s)	139, 203, 233, 333
NspV	TTCGAA	1 cut(s)	105
PflMI	CCANNNNNTGG	1 cut(s)	38
PkrI	GCNGC	2 cut(s)	50, 274
PleI	GAGTC	2 cut(s)	114, 176
PpsI	GAGTC	2 cut(s)	114, 176
PsiI	TTATAA	1 cut(s)	213
PspEI	GGTNACC	1 cut(s)	254
PspPI	GGNCC	2 cut(s)	226, 311
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	2 cut(s)	49, 273
Sau3AI	GATC	2 cut(s)	52, 82
Sau96I	GGNCC	2 cut(s)	226, 311
SchI	GAGTC	2 cut(s)	114, 176
ScrFI	CCNGG	1 cut(s)	117
SetI	ASST	5 cut(s)	19, 78, 251, 256, 261
SfuI	TTCGAA	1 cut(s)	105
SinI	GGWCC	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	2 cut(s)	69, 174
TaiI	ACGT	1 cut(s)	251
TaqI	TCGA	1 cut(s)	105
TasI	AATT	1 cut(s)	315
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseI	GCWGC	2 cut(s)	48, 272
Van91I	CCANNNNNTGG	1 cut(s)	38
Vha464I	CTTAAG	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.