Rroxscaffold_1G00063980

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005897
Physical Location & Seq
Forward (+)
85831520 .. 85833536
2017 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00063980.1

Sequence Viewer

Length: 345 bp
ATGGAGTTGAACCAGAGTGGGTTGGGAATATTTGTAGTAAGGAAGAAACATGAAGACGGCAGCAAGCATAACGAGAAACAGATTACAAAGGCGTACGGACAAAAGGCTTTGCGGTTACATCCGGACAAGAGGCCAAACGATCGCAATGCCAAGGCCAAGTTCCAAAGACTCAACTCATCCTATGCCATACTCATGGATCCAAATGCCGGAAACGAGTTTGACTATTTTCTAAAACGACTTAAAAACAAGCCCTCTTCTGAACCAAAGAAAAAGGCCTCTTCGAACCAAAGAAAAAGACCTACGAAACAAACGAAGAGGATCATGAGGCTGCTTTGTATGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

114

Amino Acids

13.27

Weight (kDa)

10.38

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 23 - 74 7e-13 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 121
AciI CCGC 1 cut(s) 112
AclWI GGATC 3 cut(s) 191, 204, 326
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 1 cut(s) 10
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AlwI GGATC 3 cut(s) 191, 204, 326
Aor13HI TCCGGA 1 cut(s) 121
AoxI GGCC 3 cut(s) 131, 153, 273
ApeKI GCWGC 2 cut(s) 60, 328
AsuII TTCGAA 1 cut(s) 281
BamHI GGATCC 1 cut(s) 196
BbsI GAAGAC 1 cut(s) 60
BbvI GCAGC 2 cut(s) 72, 315
BceAI ACGGC 1 cut(s) 73
BcgI CGANNNNNNTGC 2 cut(s) 128, 162
BisI GCNGC 2 cut(s) 61, 329
BlsI GCNGC 2 cut(s) 62, 330
BmiI GGNNCC 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 60
Bpu14I TTCGAA 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 150
BsaWI WCCGGW 1 cut(s) 121
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse3DI GCAATG 1 cut(s) 151
BseAI TCCGGA 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 2 cut(s) 118, 176
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMI GCAATG 1 cut(s) 151
BseXI GCAGC 2 cut(s) 72, 315
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 3 cut(s) 133, 155, 275
BsiEI CGRYCG 1 cut(s) 142
BsiSI CCGG 2 cut(s) 122, 207
BsiWI CGTACG 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 206
BsnI GGCC 3 cut(s) 133, 155, 275
Bsp119I TTCGAA 1 cut(s) 281
Bsp13I TCCGGA 1 cut(s) 121
Bsp143I GATC 3 cut(s) 139, 196, 318
BspACI CCGC 1 cut(s) 112
BspANI GGCC 3 cut(s) 133, 155, 275
BspEI TCCGGA 1 cut(s) 121
BspHI TCATGA 1 cut(s) 321
BspLI GGNNCC 1 cut(s) 198
BspPI GGATC 3 cut(s) 191, 204, 326
BspT104I TTCGAA 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 3 cut(s) 139, 196, 318
BssT1I CCWWGG 1 cut(s) 150
Bst6I CTCTTC 3 cut(s) 259, 283, 308
BstBI TTCGAA 1 cut(s) 281
BstC8I GCNNGC 1 cut(s) 65
BstF5I GGATG 2 cut(s) 118, 176
BstKTI GATC 3 cut(s) 142, 199, 321
BstMBI GATC 3 cut(s) 139, 196, 318
BstMCI CGRYCG 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 72, 315
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 196
BstXI CCANNNNNNTGG 1 cut(s) 193
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 3 cut(s) 133, 155, 275
BtsCI GGATG 2 cut(s) 118, 176
Cac8I GCNNGC 1 cut(s) 65
CciI TCATGA 1 cut(s) 321
Csp6I GTAC 1 cut(s) 94
CviAII CATG 3 cut(s) 50, 193, 322
CviJI RGCY 6 cut(s) 107, 133, 155, 250, 275, 328
CviKI_1 RGCY 6 cut(s) 107, 133, 155, 250, 275, 328
CviQI GTAC 1 cut(s) 94
DpnI GATC 3 cut(s) 141, 198, 320
DpnII GATC 3 cut(s) 139, 196, 318
Eam1104I CTCTTC 3 cut(s) 259, 283, 308
EarI CTCTTC 3 cut(s) 259, 283, 308
Eco130I CCWWGG 1 cut(s) 150
Eco147I AGGCCT 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 3 cut(s) 53, 196, 325
FaiI YATR 7 cut(s) 51, 69, 183, 188, 194, 323, 338
FatI CATG 3 cut(s) 49, 192, 321
Fnu4HI GCNGC 2 cut(s) 61, 329
FokI GGATG 2 cut(s) 105, 163
Fsp4HI GCNGC 2 cut(s) 61, 329
GluI GCNGC 2 cut(s) 61, 329
HaeIII GGCC 3 cut(s) 133, 155, 275
HapII CCGG 2 cut(s) 122, 207
Hin1II CATG 3 cut(s) 53, 196, 325
HinfI GANTC 1 cut(s) 168
HpaII CCGG 2 cut(s) 122, 207
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 2 cut(s) 122, 322
Hsp92II CATG 3 cut(s) 53, 196, 325
Kpn2I TCCGGA 1 cut(s) 121
Kzo9I GATC 3 cut(s) 139, 196, 318
LpnPI CCDG 3 cut(s) 26, 135, 220
Lsp1109I GCAGC 2 cut(s) 72, 315
MaeIII GTNAC 1 cut(s) 114
MalI GATC 3 cut(s) 141, 198, 320
MboI GATC 3 cut(s) 139, 196, 318
MboII GAAGA 5 cut(s) 55, 65, 246, 270, 325
MflI RGATCY 1 cut(s) 196
MlyI GAGTC 1 cut(s) 162
MnlI CCTC 5 cut(s) 123, 262, 286, 309, 318
MroI TCCGGA 1 cut(s) 121
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 1 cut(s) 191
MspI CCGG 2 cut(s) 122, 207
NdeII GATC 3 cut(s) 139, 196, 318
NlaIII CATG 3 cut(s) 53, 196, 325
NlaIV GGNNCC 1 cut(s) 198
NspV TTCGAA 1 cut(s) 281
PagI TCATGA 1 cut(s) 321
PceI AGGCCT 1 cut(s) 275
PcsI WCGNNNNNNNCGW 1 cut(s) 308
Pfl23II CGTACG 1 cut(s) 93
PkrI GCNGC 2 cut(s) 62, 330
Ple19I CGATCG 1 cut(s) 142
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
PspLI CGTACG 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 198
PsuI RGATCY 1 cut(s) 196
PvuI CGATCG 1 cut(s) 142
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 191
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 2 cut(s) 61, 329
Sau3AI GATC 3 cut(s) 139, 196, 318
SchI GAGTC 1 cut(s) 162
SetI ASST 1 cut(s) 301
SfuI TTCGAA 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 191
SseBI AGGCCT 1 cut(s) 275
SsiI CCGC 1 cut(s) 112
SspI AATATT 1 cut(s) 30
StuI AGGCCT 1 cut(s) 275
StyI CCWWGG 1 cut(s) 150
TaqI TCGA 1 cut(s) 281
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TseI GCWGC 2 cut(s) 60, 328
TspDTI ATGAA 1 cut(s) 66
TspGWI ACGGA 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.