FvH4_2g26761

DnaJ homolog, subfamily C, member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0005897
Physical Location & Seq
Reverse (-)
21434041 .. 21435144
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26761.t1

Sequence Viewer

Length: 459 bp
ATGGAGAAGGAGAAAGTTGTCGTAGATCACTATAGGGTTCTTGGTTCACCATCTGGTGAGGAAGGCAGCAAGCTTGACAAGAAACAGATTAAAGAGGCGTTTAGAGCAAGGATTTTGCAGTTACAGGTAAACGATCCCTACGCCGAGGTCAAGTTTCAAAGGCTGAAATCCTCCTACGCCATACTCAAGGATCCAAAAGCCCGGAAACAGTTTGACGATTCATTTCCAAGAGGTCTTGTTCTCACGAAGAACGAAGAGAATATATTGTTTGGGTTAGGTTACCTTATCTCTGTTGCTGCCCCGGAAGTTTTTCCGGCCGCCGCAAGAACCAAACTCGGCGGCGAGGGTAAACGTTTTAAGATTTTGAGTTCGTGCTTGTCCGGCAGCGCCTCCACACCAGTACTGTTGGCCTCCGGCCTCATCGGTGTGGATTTTGTTAGCTGTTGCACGGGCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

153

Amino Acids

16.54

Weight (kDa)

9.28

Isoelectric Point (pI)

49.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 9 - 72 7.9e-08 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 318, 321, 339, 453
AclI AACGTT 1 cut(s) 352
AclWI GGATC 3 cut(s) 128, 185, 198
AcoI YGGCCR 1 cut(s) 315
AfaI GTAC 1 cut(s) 402
AgsI TTSAA 1 cut(s) 158
AluBI AGCT 2 cut(s) 73, 441
AluI AGCT 2 cut(s) 73, 441
AlwI GGATC 3 cut(s) 128, 185, 198
AoxI GGCC 3 cut(s) 315, 408, 415
ApeKI GCWGC 3 cut(s) 66, 296, 384
Asp700I GAANNNNTTC 1 cut(s) 309
AspLEI GCGC 1 cut(s) 389
AsuC2I CCSGG 2 cut(s) 202, 302
AsuHPI GGTGA 2 cut(s) 39, 68
BamHI GGATCC 1 cut(s) 190
BbvI GCAGC 3 cut(s) 78, 283, 396
BccI CCATC 1 cut(s) 58
BcnI CCSGG 2 cut(s) 202, 302
BfmI CTRYAG 1 cut(s) 31
BfoI RGCGCY 1 cut(s) 390
BisI GCNGC 6 cut(s) 67, 297, 318, 321, 340, 385
BlsI GCNGC 6 cut(s) 68, 298, 319, 322, 341, 386
BmcAI AGTACT 1 cut(s) 402
Bme1390I CCNGG 2 cut(s) 202, 302
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 2 cut(s) 202, 302
BpuEI CTTGAG 1 cut(s) 170
BpuMI CCSGG 2 cut(s) 202, 302
BsaJI CCNNGG 2 cut(s) 144, 300
Bse1I ACTGG 1 cut(s) 398
BseDI CCNNGG 2 cut(s) 144, 300
BseNI ACTGG 1 cut(s) 398
BseX3I CGGCCG 1 cut(s) 315
BseXI GCAGC 3 cut(s) 78, 283, 396
Bsh1285I CGRYCG 1 cut(s) 318
BshFI GGCC 3 cut(s) 317, 410, 417
BsiEI CGRYCG 1 cut(s) 318
BsiSI CCGG 5 cut(s) 202, 302, 314, 381, 414
BsnI GGCC 3 cut(s) 317, 410, 417
Bsp143I GATC 3 cut(s) 25, 133, 190
BspACI CCGC 4 cut(s) 318, 321, 339, 453
BspANI GGCC 3 cut(s) 317, 410, 417
BspLI GGNNCC 1 cut(s) 192
BspPI GGATC 3 cut(s) 128, 185, 198
BsrI ACTGG 1 cut(s) 398
BssECI CCNNGG 2 cut(s) 144, 300
BssMI GATC 3 cut(s) 25, 133, 190
Bst4CI ACNGT 2 cut(s) 210, 405
Bst6I CTCTTC 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 71
BstEII GGTNACC 1 cut(s) 278
BstH2I RGCGCY 1 cut(s) 390
BstHHI GCGC 1 cut(s) 389
BstKTI GATC 3 cut(s) 28, 136, 193
BstMBI GATC 3 cut(s) 25, 133, 190
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 2 cut(s) 104, 381
BstPI GGTNACC 1 cut(s) 278
BstSCI CCNGG 2 cut(s) 200, 300
BstSFI CTRYAG 1 cut(s) 31
BstV1I GCAGC 3 cut(s) 78, 283, 396
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BstZI CGGCCG 1 cut(s) 315
BsuRI GGCC 3 cut(s) 317, 410, 417
Cac8I GCNNGC 1 cut(s) 71
CfoI GCGC 1 cut(s) 389
Csp6I GTAC 1 cut(s) 401
CviJI RGCY 7 cut(s) 73, 163, 200, 317, 410, 417, 441
CviKI_1 RGCY 7 cut(s) 73, 163, 200, 317, 410, 417, 441
CviQI GTAC 1 cut(s) 401
DpnI GATC 3 cut(s) 27, 135, 192
DpnII GATC 3 cut(s) 25, 133, 190
EaeI YGGCCR 1 cut(s) 315
EagI CGGCCG 1 cut(s) 315
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
EclXI CGGCCG 1 cut(s) 315
Eco52I CGGCCG 1 cut(s) 315
Eco91I GGTNACC 1 cut(s) 278
EcoO65I GGTNACC 1 cut(s) 278
FaiI YATR 3 cut(s) 33, 182, 263
Fnu4HI GCNGC 6 cut(s) 67, 297, 318, 321, 340, 385
Fsp4HI GCNGC 6 cut(s) 67, 297, 318, 321, 340, 385
GlaI GCGC 1 cut(s) 388
GluI GCNGC 6 cut(s) 67, 297, 318, 321, 340, 385
HaeII RGCGCY 1 cut(s) 390
HaeIII GGCC 3 cut(s) 317, 410, 417
HapII CCGG 5 cut(s) 202, 302, 314, 381, 414
HhaI GCGC 1 cut(s) 389
Hin6I GCGC 1 cut(s) 387
HinP1I GCGC 1 cut(s) 387
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 1 cut(s) 218
HpaII CCGG 5 cut(s) 202, 302, 314, 381, 414
HphI GGTGA 2 cut(s) 39, 68
Hpy166II GTNNAC 3 cut(s) 47, 130, 350
Hpy188III TCNNGA 1 cut(s) 244
Hpy8I GTNNAC 3 cut(s) 47, 130, 350
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 2 cut(s) 210, 405
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 2 cut(s) 118, 447
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 381
HpySE526I ACGT 1 cut(s) 352
HspAI GCGC 1 cut(s) 387
Kzo9I GATC 3 cut(s) 25, 133, 190
LpnPI CCDG 8 cut(s) 39, 110, 215, 315, 327, 394, 411, 427
Lsp1109I GCAGC 3 cut(s) 78, 283, 396
MaeII ACGT 1 cut(s) 352
MaeIII GTNAC 2 cut(s) 120, 278
MalI GATC 3 cut(s) 27, 135, 192
MboI GATC 3 cut(s) 25, 133, 190
MboII GAAGA 2 cut(s) 259, 266
MflI RGATCY 1 cut(s) 190
MnlI CCTC 9 cut(s) 52, 88, 139, 181, 224, 337, 400, 421, 428
MroXI GAANNNNTTC 1 cut(s) 309
MseI TTAA 3 cut(s) 90, 357, 457
MslI CAYNNNNRTG 1 cut(s) 425
MspI CCGG 5 cut(s) 202, 302, 314, 381, 414
MspR9I CCNGG 2 cut(s) 202, 302
MwoI GCNNNNNNNGC 2 cut(s) 104, 381
NciI CCSGG 2 cut(s) 202, 302
NdeII GATC 3 cut(s) 25, 133, 190
NlaIV GGNNCC 1 cut(s) 192
NmeAIII GCCGAG 2 cut(s) 169, 315
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 6 cut(s) 68, 298, 319, 322, 341, 386
Psp1406I AACGTT 1 cut(s) 352
PspEI GGTNACC 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 192
PsuI RGATCY 1 cut(s) 190
RsaI GTAC 1 cut(s) 402
RsaNI GTAC 1 cut(s) 401
RseI CAYNNNNRTG 1 cut(s) 425
SaqAI TTAA 3 cut(s) 90, 357, 457
SatI GCNGC 6 cut(s) 67, 297, 318, 321, 340, 385
Sau3AI GATC 3 cut(s) 25, 133, 190
ScaI AGTACT 1 cut(s) 402
ScrFI CCNGG 2 cut(s) 202, 302
SetI ASST 8 cut(s) 75, 129, 150, 235, 280, 285, 355, 443
SfcI CTRYAG 1 cut(s) 31
SmiMI CAYNNNNRTG 1 cut(s) 425
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SsiI CCGC 4 cut(s) 318, 321, 339, 453
StyD4I CCNGG 2 cut(s) 200, 300
TaaI ACNGT 2 cut(s) 210, 405
TaiI ACGT 1 cut(s) 355
TatI WGTACW 1 cut(s) 400
TauI GCSGC 3 cut(s) 320, 323, 342
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 3 cut(s) 90, 357, 457
Tru9I TTAA 3 cut(s) 90, 357, 457
TseI GCWGC 3 cut(s) 66, 296, 384
TspDTI ATGAA 1 cut(s) 210
XmnI GAANNNNTTC 1 cut(s) 309
ZrmI AGTACT 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.