Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005897

Physical Location & Seq

Genomic Coordinates Reverse (-)

8327359 .. 8327772

Gene Structure 414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG093300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGATCCAAATGCCCGGAAACAGTTTGACTATTTTCTAAAACGACTTAACAACAAGCCCTCTTCTGAACCAAAGAAAAAGACCTCTGAAACGAACGAAGAGGATCATGAGACTGCTTTGTATGTGTTAGGTCACCTTATCTTTGTTATTGTCCCAATGGCTTTTCCGGCTGCGAGAACCAGATTCGCTTGTGCAATGAGGGGGATTTGCTTTGAACTTGCTTTTGAAGAACTACGCAGACGTCAACAATTGGAAAAACTCTGGTCAATGATGGTTCGAGTAGGCGACTATTTTAAACGAAAAACTCCTCAGGTGGCCGCCAATCAAGAACCAGAATCACGGGGCGACTATTTTAGCTTCTGGCCTTGGTTGTTCATGTATTTTTATAAGGAGATTTTTAAAGGGGAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

16.46

Weight (kDa)

9.1

Isoelectric Point (pI)

57.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005897)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07361 FvH4_2g26761 FvH4_3g06550 FvH4_3g23920 FvH4_6g40672 FvH4_6g40673
rosa_laevigata	RLG00000031929 RLG00000031940 RLG00000031942 RLG00000031943
rosa_multiflora	Rmu_co8501271.1_g000001 Rmu_sc0002639.1_g000011 Rmu_sc0003577.1_g000007
rosa_roxburghii	Rroxscaffold_1G00063980 Rroxscaffold_1G00064060
rosa_rugosa	Rorug05G0003000 Rorug05G0003100.1 Rorug05G0003200 Rorug06G0097300 Rorug06G0146800
rosa_samantha	Rh5AG096800 Rh5BG093100 Rh5BG093200 Rh5BG093300 Rh5BG094800 Rh5CG105900 Rh5DG092500
rosa_wichuraiana	Rw5G008480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	387
AatII	GACGTC	1 cut(s)	244
AciI	CCGC	1 cut(s)	318
AclWI	GGATC	2 cut(s)	12, 111
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	407
AcyI	GRCGYC	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	215, 227
AluBI	AGCT	1 cut(s)	357
AluI	AGCT	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	2 cut(s)	12, 111
AoxI	GGCC	2 cut(s)	315, 362
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	1 cut(s)	407
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	125
AxyI	CCTNAGG	1 cut(s)	309
BamHI	GGATCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	1 cut(s)	265
BcnI	CCSGG	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	104
BisI	GCNGC	2 cut(s)	171, 318
BlsI	GCNGC	2 cut(s)	172, 319
Bme1390I	CCNGG	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	16
BsaHI	GRCGYC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	365
Bse21I	CCTNAGG	1 cut(s)	309
Bse3DI	GCAATG	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	365
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	323
BseRI	GAGGAG	1 cut(s)	297
BseXI	GCAGC	1 cut(s)	157
BshFI	GGCC	2 cut(s)	317, 364
BsiSI	CCGG	2 cut(s)	16, 167
BslFI	GGGAC	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	317, 364
Bsp143I	GATC	2 cut(s)	4, 103
BspACI	CCGC	1 cut(s)	318
BspANI	GGCC	2 cut(s)	317, 364
BspCNI	CTCAG	1 cut(s)	322
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	12, 111
BsrDI	GCAATG	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	2 cut(s)	4, 103
BssNI	GRCGYC	1 cut(s)	241
BssT1I	CCWWGG	1 cut(s)	365
Bst4CI	ACNGT	1 cut(s)	24
Bst6I	CTCTTC	2 cut(s)	67, 93
BstACI	GRCGYC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	309
BstEII	GGTNACC	1 cut(s)	131
BstKTI	GATC	2 cut(s)	7, 106
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	2 cut(s)	4, 103
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstPI	GGTNACC	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu36I	CCTNAGG	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	317, 364
CciI	TCATGA	1 cut(s)	106
CviAII	CATG	2 cut(s)	107, 376
CviJI	RGCY	6 cut(s)	58, 161, 170, 317, 357, 364
CviKI_1	RGCY	6 cut(s)	58, 161, 170, 317, 357, 364
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	2 cut(s)	6, 105
DpnII	GATC	2 cut(s)	4, 103
DraI	TTTAAA	2 cut(s)	295, 400
EaeI	YGGCCR	1 cut(s)	315
Eam1104I	CTCTTC	2 cut(s)	67, 93
EarI	CTCTTC	2 cut(s)	67, 93
Eco130I	CCWWGG	1 cut(s)	365
Eco81I	CCTNAGG	1 cut(s)	309
Eco91I	GGTNACC	1 cut(s)	131
EcoO65I	GGTNACC	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	365
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	2 cut(s)	110, 379
FaiI	YATR	4 cut(s)	108, 123, 377, 387
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	2 cut(s)	106, 375
Fnu4HI	GCNGC	2 cut(s)	171, 318
Fsp4HI	GCNGC	2 cut(s)	171, 318
GluI	GCNGC	2 cut(s)	171, 318
HaeIII	GGCC	2 cut(s)	317, 364
HapII	CCGG	2 cut(s)	16, 167
Hin1I	GRCGYC	1 cut(s)	241
Hin1II	CATG	2 cut(s)	110, 379
HincII	GTYRAC	1 cut(s)	245
HindII	GTYRAC	1 cut(s)	245
HinfI	GANTC	2 cut(s)	183, 335
HpaII	CCGG	2 cut(s)	16, 167
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	2 cut(s)	67, 88
Hpy188III	TCNNGA	2 cut(s)	107, 326
Hpy8I	GTNNAC	1 cut(s)	245
HpyCH4III	ACNGT	1 cut(s)	24
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	1 cut(s)	241
Hsp92I	GRCGYC	1 cut(s)	241
Hsp92II	CATG	2 cut(s)	110, 379
Kzo9I	GATC	2 cut(s)	4, 103
LpnPI	CCDG	7 cut(s)	29, 180, 193, 247, 296, 345, 346
Lsp1109I	GCAGC	1 cut(s)	157
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	2 cut(s)	6, 105
MboI	GATC	2 cut(s)	4, 103
MboII	GAAGA	3 cut(s)	54, 110, 239
MfeI	CAATTG	1 cut(s)	248
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	2 cut(s)	248, 407
MnlI	CCTC	5 cut(s)	70, 94, 94, 192, 318
MseI	TTAA	4 cut(s)	48, 294, 399, 412
MspI	CCGG	2 cut(s)	16, 167
MspR9I	CCNGG	1 cut(s)	16
MunI	CAATTG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	167
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	2 cut(s)	4, 103
NlaIII	CATG	2 cut(s)	110, 379
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	131
PagI	TCATGA	1 cut(s)	106
PfeI	GAWTC	2 cut(s)	183, 335
PkrI	GCNGC	2 cut(s)	172, 319
PsiI	TTATAA	1 cut(s)	387
PspEI	GGTNACC	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	4
SaqAI	TTAA	4 cut(s)	48, 294, 399, 412
SatI	GCNGC	2 cut(s)	171, 318
Sau3AI	GATC	2 cut(s)	4, 103
ScrFI	CCNGG	1 cut(s)	16
SetI	ASST	6 cut(s)	86, 133, 138, 244, 315, 359
Sse9I	AATT	2 cut(s)	248, 407
SsiI	CCGC	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	14
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	1 cut(s)	24
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	1 cut(s)	277
TasI	AATT	2 cut(s)	248, 407
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	2 cut(s)	183, 335
Tru1I	TTAA	4 cut(s)	48, 294, 399, 412
Tru9I	TTAA	4 cut(s)	48, 294, 399, 412
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	1 cut(s)	364
XapI	RAATTY	1 cut(s)	407
ZraI	GACGTC	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.