FvH4_6g40672

DnaJ homolog, subfamily C, member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005897
Physical Location & Seq
Reverse (-)
32125271 .. 32126673
1403 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40672.t1

Sequence Viewer

Length: 510 bp
ATGCCTTTGTTCGTGCAACATAGTAGGCCTCGTCCCCAAGCCTCTTCTCCAAGCTCTTCAACCCTCTTCGCTTGGTTTCTGTTTATCCGTCTATTTCTTGCTCCTTCAGCACCAACGCCCAGAGGTCCAGCTGTGGCCATCATGACAGTAGCGTCTCCGTCGACTGCACCACCTCCGGCTCTCCCTCTCGCCACCTCACTGAGTCTTCGTAGATCACTACAGGGTGTTCTTGGTTTAGCATCTGGTAAGGAAGGCAACAAGCTTGATGAGGAACAGATTAAAAAGGCGTACAGAACAAAGATTTTGCAGTTGCAGCTAAACGATCCCTCCGCCAAGGCCAAGTTCCAAAGGCTCAAGTCCTTCTATGCCATACTCATGGATCCAAAATCCCGGAAACAGTTTGACGAATCTTTTCCAAGAGGACTTGTTCTCACCAAGGAACAACGGAATATACTGTTTGGGTTAGGTTACCTTATCATTGTTGCTGTAGAACCAAACTCCACAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

170

Amino Acids

18.59

Weight (kDa)

10.5

Isoelectric Point (pI)

66.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 88 - 135 7.2e-09 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 151
AccI GTMKAC 1 cut(s) 161
AciI CCGC 1 cut(s) 330
AclWI GGATC 3 cut(s) 317, 374, 387
AcoI YGGCCR 1 cut(s) 135
AcuI CTGAAG 1 cut(s) 90
AfaI GTAC 1 cut(s) 290
AgsI TTSAA 1 cut(s) 60
AjuI GAANNNNNNNTTGG 2 cut(s) 326, 358
AluBI AGCT 4 cut(s) 54, 131, 262, 316
AluI AGCT 4 cut(s) 54, 131, 262, 316
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 3 cut(s) 317, 374, 387
AoxI GGCC 3 cut(s) 26, 135, 336
ApeKI GCWGC 1 cut(s) 313
Asp700I GAANNNNTTC 1 cut(s) 411
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 391
AsuHPI GGTGA 1 cut(s) 424
AvaII GGWCC 1 cut(s) 125
BalI TGGCCA 1 cut(s) 137
BamHI GGATCC 1 cut(s) 379
BbsI GAAGAC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 325
BccI CCATC 1 cut(s) 146
BcnI CCSGG 1 cut(s) 391
BcoDI GTCTC 1 cut(s) 159
BfmI CTRYAG 2 cut(s) 218, 486
BisI GCNGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 315
Bme1390I CCNGG 1 cut(s) 391
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 381
BmrFI CCNGG 1 cut(s) 391
BmsI GCATC 1 cut(s) 248
BpiI GAAGAC 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 338
BpuMI CCSGG 1 cut(s) 391
BsaJI CCNNGG 2 cut(s) 333, 435
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
BseDI CCNNGG 2 cut(s) 333, 435
BseMII CTCAG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 325
BsgI GTGCAG 1 cut(s) 150
BshFI GGCC 3 cut(s) 28, 137, 338
BsiSI CCGG 2 cut(s) 176, 391
BslFI GGGAC 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 159
BsmBI CGTCTC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 3 cut(s) 28, 137, 338
Bsp143I GATC 3 cut(s) 212, 322, 379
BspACI CCGC 1 cut(s) 330
BspANI GGCC 3 cut(s) 28, 137, 338
BspCNI CTCAG 1 cut(s) 192
BspHI TCATGA 1 cut(s) 141
BspLI GGNNCC 1 cut(s) 381
BspPI GGATC 3 cut(s) 317, 374, 387
BspQI GCTCTTC 1 cut(s) 61
BssECI CCNNGG 2 cut(s) 333, 435
BssMI GATC 3 cut(s) 212, 322, 379
BssT1I CCWWGG 2 cut(s) 333, 435
Bst4CI ACNGT 4 cut(s) 148, 399, 456, 505
Bst6I CTCTTC 3 cut(s) 49, 61, 71
BstDEI CTNAG 1 cut(s) 200
BstEII GGTNACC 1 cut(s) 467
BstKTI GATC 3 cut(s) 215, 325, 382
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 3 cut(s) 212, 322, 379
BstMWI GCNNNNNNNGC 2 cut(s) 107, 313
BstPI GGTNACC 1 cut(s) 467
BstSCI CCNGG 1 cut(s) 389
BstSFI CTRYAG 2 cut(s) 218, 486
BstV1I GCAGC 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 379
BstXI CCANNNNNNTGG 1 cut(s) 376
BstYI RGATCY 1 cut(s) 379
BsuRI GGCC 3 cut(s) 28, 137, 338
BtsIMutI CAGTG 2 cut(s) 197, 510
CciI TCATGA 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 125
CseI GACGC 1 cut(s) 141
Csp6I GTAC 1 cut(s) 289
CviAII CATG 2 cut(s) 142, 376
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 1 cut(s) 200
DpnI GATC 3 cut(s) 214, 324, 381
DpnII GATC 3 cut(s) 212, 322, 379
DrdI GACNNNNNNGTC 1 cut(s) 151
DseDI GACNNNNNNGTC 1 cut(s) 151
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 3 cut(s) 49, 61, 71
EarI CTCTTC 3 cut(s) 49, 61, 71
EciI GGCGGA 1 cut(s) 319
Eco130I CCWWGG 2 cut(s) 333, 435
Eco147I AGGCCT 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 90
Eco91I GGTNACC 1 cut(s) 467
EcoO65I GGTNACC 1 cut(s) 467
EcoT14I CCWWGG 2 cut(s) 333, 435
ErhI CCWWGG 2 cut(s) 333, 435
Esp3I CGTCTC 1 cut(s) 159
FaeI CATG 2 cut(s) 145, 379
FaiI YATR 6 cut(s) 21, 143, 366, 371, 377, 452
FaqI GGGAC 1 cut(s) 18
FatI CATG 2 cut(s) 141, 375
FblI GTMKAC 1 cut(s) 161
Fnu4HI GCNGC 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 314
GluI GCNGC 1 cut(s) 314
HaeIII GGCC 3 cut(s) 28, 137, 338
HapII CCGG 2 cut(s) 176, 391
HgaI GACGC 1 cut(s) 141
Hin1II CATG 2 cut(s) 145, 379
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 2 cut(s) 202, 407
HpaII CCGG 2 cut(s) 176, 391
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 1 cut(s) 162
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 1 cut(s) 162
Hpy99I CGWCG 1 cut(s) 163
HpyAV CCTTC 3 cut(s) 114, 245, 370
HpyCH4III ACNGT 4 cut(s) 148, 399, 456, 505
HpyCH4V TGCA 4 cut(s) 16, 167, 307, 313
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 313
HpyF3I CTNAG 1 cut(s) 200
Hsp92II CATG 2 cut(s) 145, 379
Kzo9I GATC 3 cut(s) 212, 322, 379
LguI GCTCTTC 1 cut(s) 61
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 6 cut(s) 133, 141, 189, 206, 228, 404
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 1 cut(s) 248
MaeIII GTNAC 1 cut(s) 467
MalI GATC 3 cut(s) 214, 324, 381
MboI GATC 3 cut(s) 212, 322, 379
MboII GAAGA 4 cut(s) 36, 48, 58, 197
MflI RGATCY 1 cut(s) 379
MlsI TGGCCA 1 cut(s) 137
MluNI TGGCCA 1 cut(s) 137
MlyI GAGTC 1 cut(s) 211
Mox20I TGGCCA 1 cut(s) 137
MroXI GAANNNNTTC 1 cut(s) 411
MscI TGGCCA 1 cut(s) 137
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 1 cut(s) 374
Msp20I TGGCCA 1 cut(s) 137
MspA1I CMGCKG 1 cut(s) 131
MspI CCGG 2 cut(s) 176, 391
MspR9I CCNGG 1 cut(s) 391
MwoI GCNNNNNNNGC 2 cut(s) 107, 313
NciI CCSGG 1 cut(s) 391
NdeII GATC 3 cut(s) 212, 322, 379
NlaIII CATG 2 cut(s) 145, 379
NlaIV GGNNCC 1 cut(s) 381
PagI TCATGA 1 cut(s) 141
PceI AGGCCT 1 cut(s) 28
PciSI GCTCTTC 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 1 cut(s) 407
PfoI TCCNGGA 1 cut(s) 389
PkrI GCNGC 1 cut(s) 315
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
PspEI GGTNACC 1 cut(s) 467
PspN4I GGNNCC 1 cut(s) 381
PspPI GGNCC 1 cut(s) 125
PsuI RGATCY 1 cut(s) 379
PvuII CAGCTG 1 cut(s) 131
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 374
SalI GTCGAC 1 cut(s) 160
SapI GCTCTTC 1 cut(s) 61
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 1 cut(s) 314
Sau3AI GATC 3 cut(s) 212, 322, 379
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 391
SetI ASST 9 cut(s) 56, 127, 133, 175, 197, 264, 318, 469, 474
SfaNI GCATC 1 cut(s) 248
SfcI CTRYAG 2 cut(s) 218, 486
SinI GGWCC 1 cut(s) 125
SmiMI CAYNNNNRTG 1 cut(s) 374
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
SseBI AGGCCT 1 cut(s) 28
SsiI CCGC 1 cut(s) 330
StuI AGGCCT 1 cut(s) 28
StyD4I CCNGG 1 cut(s) 389
StyI CCWWGG 2 cut(s) 333, 435
TaaI ACNGT 4 cut(s) 148, 399, 456, 505
TaqI TCGA 1 cut(s) 161
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 2 cut(s) 204, 510
TseI GCWGC 1 cut(s) 313
TspGWI ACGGA 3 cut(s) 77, 147, 460
TspRI CASTG 2 cut(s) 204, 510
VpaK11BI GGWCC 1 cut(s) 125
XmiI GTMKAC 1 cut(s) 161
XmnI GAANNNNTTC 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.