FvH4_6g40673

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005897
Physical Location & Seq
Reverse (-)
32136203 .. 32139187
2985 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40673.t1

Sequence Viewer

Length: 624 bp
ATGGAGAAGCAAACTGCAGTATTCGTAGATCACTATAGGGTTCTTGGTTTGCCATCTGGCAAGGAAGGCAGCAAGCTTGAAGATGAACAGATTAAAAAGGCGTACAGAGCAAAGGTTTTGCAGTTACAGCTAAACGATCTCTCCTCCAAGGCCAAGTTCCAAAGGCTCAAGTCCTCCTATGCCATACTCATGGATCCAAAATCCCGGAAACAGTTTGACGACACTTGTCCAAGAGAACTTGTTCTCACCAAGGACCAACAGAACATATTGCTTGGGTTATGTTACCTTGTCTTTGTTGCTTCCCCGGCGACGGCTTTTCCGGCTGCGAGAACCAAACTCGCTAGTGTAGCCACAATACTTTGTTATCACCTTGCTTTTAGAAGAACTCCGAGTCAGGCTAGCACCAATAATCAAGAGCCAAAATCACAGGAAGGCAGTTATATGAGATCAGCCTTTAAATCTTTCTTAGATGGGTTTCTTGAACAATCTTTATTAGATGGGTGCAAGGACGTGTCTAGAGGCCTTGTCAGAGGAGGAGAGACTGAGATGAGAGTGGAAGTGTGGGAAGATAACAGTGACTCAGGTCAATTTGAGGCATACCGTCGCAAGCCGGAGCAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

208

Amino Acids

23.41

Weight (kDa)

8.97

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 10 - 73 3.1e-09 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 188, 201
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 310
AflIII ACRYGT 1 cut(s) 510
AgsI TTSAA 2 cut(s) 80, 482
AjiI CACGTC 1 cut(s) 511
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 3 cut(s) 76, 130, 619
AluI AGCT 3 cut(s) 76, 130, 619
Alw26I GTCTC 1 cut(s) 533
AlwI GGATC 2 cut(s) 188, 201
AoxI GGCC 2 cut(s) 150, 520
ApeKI GCWGC 3 cut(s) 69, 323, 616
Asp700I GAANNNNTTC 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 253
AsuC2I CCSGG 2 cut(s) 205, 305
AsuHPI GGTGA 2 cut(s) 238, 359
AsuNHI GCTAGC 1 cut(s) 398
AvaII GGWCC 1 cut(s) 253
BamHI GGATCC 1 cut(s) 193
BbvI GCAGC 2 cut(s) 81, 310
BccI CCATC 3 cut(s) 61, 464, 491
BceAI ACGGC 1 cut(s) 327
BcnI CCSGG 2 cut(s) 205, 305
BcoDI GTCTC 1 cut(s) 533
BfaI CTAG 3 cut(s) 342, 399, 516
BfmI CTRYAG 2 cut(s) 15, 34
BisI GCNGC 3 cut(s) 70, 324, 617
BlsI GCNGC 3 cut(s) 71, 325, 618
Bme1390I CCNGG 2 cut(s) 205, 305
Bme18I GGWCC 1 cut(s) 253
BmgBI CACGTC 1 cut(s) 511
BmgT120I GGNCC 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 2 cut(s) 205, 305
BmtI GCTAGC 1 cut(s) 402
BoxI GACNNNNGTC 2 cut(s) 225, 582
BpuEI CTTGAG 1 cut(s) 152
BpuMI CCSGG 2 cut(s) 205, 305
BsaJI CCNNGG 3 cut(s) 147, 249, 303
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 1 cut(s) 310
BseDI CCNNGG 3 cut(s) 147, 249, 303
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMII CTCAG 2 cut(s) 534, 594
BseRI GAGGAG 3 cut(s) 133, 546, 549
BseXI GCAGC 2 cut(s) 81, 310
BshFI GGCC 2 cut(s) 152, 522
BsiSI CCGG 4 cut(s) 205, 305, 320, 611
BslI CCNNNNNNNGG 1 cut(s) 310
BsmAI GTCTC 1 cut(s) 533
BsnI GGCC 2 cut(s) 152, 522
Bsp143I GATC 4 cut(s) 28, 136, 193, 446
BspANI GGCC 2 cut(s) 152, 522
BspCNI CTCAG 2 cut(s) 535, 593
BspLI GGNNCC 1 cut(s) 195
BspMAI CTGCAG 1 cut(s) 19
BspOI GCTAGC 1 cut(s) 402
BspPI GGATC 2 cut(s) 188, 201
BssECI CCNNGG 3 cut(s) 147, 249, 303
BssMI GATC 4 cut(s) 28, 136, 193, 446
BssT1I CCWWGG 2 cut(s) 147, 249
Bst4CI ACNGT 3 cut(s) 213, 575, 602
BstC8I GCNNGC 3 cut(s) 74, 400, 608
BstDEI CTNAG 3 cut(s) 466, 543, 580
BstKTI GATC 4 cut(s) 31, 139, 196, 449
BstMAI GTCTC 1 cut(s) 533
BstMBI GATC 4 cut(s) 28, 136, 193, 446
BstMWI GCNNNNNNNGC 7 cut(s) 66, 107, 127, 305, 320, 347, 616
BstPAI GACNNNNGTC 2 cut(s) 225, 582
BstSCI CCNGG 2 cut(s) 203, 303
BstSFI CTRYAG 2 cut(s) 15, 34
BstV1I GCAGC 2 cut(s) 81, 310
BstX2I RGATCY 1 cut(s) 193
BstXI CCANNNNNNTGG 1 cut(s) 190
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 2 cut(s) 152, 522
BtrI CACGTC 1 cut(s) 511
BtsIMutI CAGTG 1 cut(s) 580
Cac8I GCNNGC 3 cut(s) 74, 400, 608
Cfr13I GGNCC 1 cut(s) 253
Csp6I GTAC 1 cut(s) 103
CviAII CATG 1 cut(s) 190
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 3 cut(s) 466, 543, 580
DpnI GATC 4 cut(s) 30, 138, 195, 448
DpnII GATC 4 cut(s) 28, 136, 193, 446
DraI TTTAAA 1 cut(s) 457
Eco130I CCWWGG 2 cut(s) 147, 249
Eco147I AGGCCT 1 cut(s) 522
Eco47I GGWCC 1 cut(s) 253
EcoT14I CCWWGG 2 cut(s) 147, 249
ErhI CCWWGG 2 cut(s) 147, 249
FaeI CATG 1 cut(s) 193
FaiI YATR 9 cut(s) 36, 180, 185, 191, 266, 280, 441, 443, 598
FatI CATG 1 cut(s) 189
Fnu4HI GCNGC 3 cut(s) 70, 324, 617
Fsp4HI GCNGC 3 cut(s) 70, 324, 617
FspBI CTAG 3 cut(s) 342, 399, 516
GluI GCNGC 3 cut(s) 70, 324, 617
HaeIII GGCC 2 cut(s) 152, 522
HapII CCGG 4 cut(s) 205, 305, 320, 611
Hin1II CATG 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 2 cut(s) 391, 578
HpaII CCGG 4 cut(s) 205, 305, 320, 611
HphI GGTGA 2 cut(s) 238, 359
Hpy188I TCNGA 2 cut(s) 390, 530
Hpy188III TCNNGA 3 cut(s) 413, 479, 516
Hpy99I CGWCG 2 cut(s) 313, 606
HpyAV CCTTC 2 cut(s) 59, 425
HpyCH4III ACNGT 3 cut(s) 213, 575, 602
HpyCH4IV ACGT 1 cut(s) 510
HpyCH4V TGCA 3 cut(s) 17, 121, 504
HpyF10VI GCNNNNNNNGC 7 cut(s) 66, 107, 127, 305, 320, 347, 616
HpyF3I CTNAG 3 cut(s) 466, 543, 580
HpySE526I ACGT 1 cut(s) 510
Hsp92II CATG 1 cut(s) 193
Kzo9I GATC 4 cut(s) 28, 136, 193, 446
LmnI GCTCC 1 cut(s) 613
LpnPI CCDG 7 cut(s) 42, 218, 318, 333, 380, 413, 567
Lsp1109I GCAGC 2 cut(s) 81, 310
MaeI CTAG 3 cut(s) 342, 399, 516
MaeII ACGT 1 cut(s) 510
MaeIII GTNAC 3 cut(s) 123, 281, 575
MalI GATC 4 cut(s) 30, 138, 195, 448
MboI GATC 4 cut(s) 28, 136, 193, 446
MboII GAAGA 3 cut(s) 92, 393, 578
MflI RGATCY 1 cut(s) 193
MluCI AATT 1 cut(s) 587
MlyI GAGTC 2 cut(s) 400, 572
MnlI CCTC 6 cut(s) 154, 184, 512, 524, 527, 586
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 2 cut(s) 93, 456
MslI CAYNNNNRTG 1 cut(s) 188
MspI CCGG 4 cut(s) 205, 305, 320, 611
MspR9I CCNGG 2 cut(s) 205, 305
MwoI GCNNNNNNNGC 7 cut(s) 66, 107, 127, 305, 320, 347, 616
NciI CCSGG 2 cut(s) 205, 305
NdeII GATC 4 cut(s) 28, 136, 193, 446
NheI GCTAGC 1 cut(s) 398
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 1 cut(s) 195
NmuCI GTSAC 1 cut(s) 575
PceI AGGCCT 1 cut(s) 522
PdmI GAANNNNTTC 1 cut(s) 240
PfoI TCCNGGA 1 cut(s) 203
PkrI GCNGC 3 cut(s) 71, 325, 618
PleI GAGTC 2 cut(s) 399, 572
PpsI GAGTC 2 cut(s) 399, 572
PshAI GACNNNNGTC 2 cut(s) 225, 582
PspN4I GGNNCC 1 cut(s) 195
PspPI GGNCC 1 cut(s) 253
PstI CTGCAG 1 cut(s) 19
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 2 cut(s) 93, 456
SatI GCNGC 3 cut(s) 70, 324, 617
Sau3AI GATC 4 cut(s) 28, 136, 193, 446
Sau96I GGNCC 1 cut(s) 253
SchI GAGTC 2 cut(s) 400, 572
ScrFI CCNGG 2 cut(s) 205, 305
SetI ASST 8 cut(s) 78, 117, 132, 288, 372, 513, 586, 621
SfcI CTRYAG 2 cut(s) 15, 34
SinI GGWCC 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 1 cut(s) 587
SseBI AGGCCT 1 cut(s) 522
SspMI CTAG 3 cut(s) 342, 399, 516
StuI AGGCCT 1 cut(s) 522
StyD4I CCNGG 2 cut(s) 203, 303
StyI CCWWGG 2 cut(s) 147, 249
TaaI ACNGT 3 cut(s) 213, 575, 602
TaiI ACGT 1 cut(s) 513
TasI AATT 1 cut(s) 587
Tru1I TTAA 2 cut(s) 93, 456
Tru9I TTAA 2 cut(s) 93, 456
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 1 cut(s) 575
TseI GCWGC 3 cut(s) 69, 323, 616
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 1 cut(s) 99
TspRI CASTG 1 cut(s) 580
VpaK11BI GGWCC 1 cut(s) 253
XbaI TCTAGA 1 cut(s) 515
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 3 cut(s) 342, 399, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.