Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005897

Physical Location & Seq

Genomic Coordinates Forward (+)

3770712 .. 3771541

Gene Structure 830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGAGAAGAACAAAGTGGTCGTAGATCACTATCAGGTTCTTGGTTTACCATCTGGTGAAGAAGGCGCCAAGCTTGAGGAGAAAGAGATCACAAAGGCGTATAGAGCAAAGGCTTTGGAGTTGCACCCAGACAAGAGACCAAACGATCCCAATGCCAATGCCGAGTTCCAACTTCTCAACGCATCCTACGAGATACTCAACGATCCAAAAGCCCGGAAACAGTTCTACTCTTCTCTAAGACTAGACAACAACCCCTCTGAACCACCACCAGCCCCTGAACCATCACCAAGTAAGAATGAGGATCTTGCTGAGGGTTATTTGTTTGTGGTTGCATGGTTTGTTGATCTTTGTTTTAGCCCCCATGGTTTCTCCGGAATCGAGATCGAGAAGCCATACATGGAAGAGGTTGGGTTCTTATTTAGAATGTTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

145

Amino Acids

16.39

Weight (kDa)

4.91

Isoelectric Point (pI)

59.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	9 - 75	1.3e-18	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005897)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07361 FvH4_2g26761 FvH4_3g06550 FvH4_3g23920 FvH4_6g40672 FvH4_6g40673
rosa_laevigata	RLG00000031929 RLG00000031940 RLG00000031942 RLG00000031943
rosa_multiflora	Rmu_co8501271.1_g000001 Rmu_sc0002639.1_g000011 Rmu_sc0003577.1_g000007
rosa_roxburghii	Rroxscaffold_1G00063980 Rroxscaffold_1G00064060
rosa_rugosa	Rorug05G0003000 Rorug05G0003100.1 Rorug05G0003200 Rorug06G0097300 Rorug06G0146800
rosa_samantha	Rh5AG096800 Rh5BG093100 Rh5BG093200 Rh5BG093300 Rh5BG094800 Rh5CG105900 Rh5DG092500
rosa_wichuraiana	Rw5G008480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	65
AccIII	TCCGGA	1 cut(s)	371
AclWI	GGATC	3 cut(s)	140, 197, 309
AcyI	GRCGYC	1 cut(s)	66
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	3 cut(s)	140, 197, 309
AlwNI	CAGNNNCTG	1 cut(s)	275
Aor13HI	TCCGGA	1 cut(s)	371
Asp700I	GAANNNNTTC	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	68
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	2 cut(s)	68, 276
BanI	GGYRCC	1 cut(s)	65
BbvCI	CCTCAGC	1 cut(s)	309
BccI	CCATC	2 cut(s)	58, 289
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BcnI	CCSGG	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	1 cut(s)	242
BfoI	RGCGCY	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	214
BmsI	GCATC	1 cut(s)	191
Bpu10I	CCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	214
BsaBI	GATNNNNATC	1 cut(s)	30
BsaHI	GRCGYC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	1 cut(s)	361
BsaWI	WCCGGW	1 cut(s)	371
Bse8I	GATNNNNATC	1 cut(s)	30
BseAI	TCCGGA	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	1 cut(s)	182
BseJI	GATNNNNATC	1 cut(s)	30
BseMII	CTCAG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	92
BshNI	GGYRCC	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	214, 372
BsmAI	GTCTC	1 cut(s)	130
Bso31I	GGTCTC	1 cut(s)	130
Bsp13I	TCCGGA	1 cut(s)	371
Bsp143I	GATC	7 cut(s)	25, 87, 145, 202, 301, 343, 381
Bsp19I	CCATGG	1 cut(s)	361
BspCNI	CTCAG	1 cut(s)	301
BspEI	TCCGGA	1 cut(s)	371
BspLI	GGNNCC	1 cut(s)	67
BspPI	GGATC	3 cut(s)	140, 197, 309
BspT107I	GGYRCC	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	7 cut(s)	25, 87, 145, 202, 301, 343, 381
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	361
Bst4CI	ACNGT	1 cut(s)	222
Bst6I	CTCTTC	2 cut(s)	235, 396
BstACI	GRCGYC	1 cut(s)	66
BstDEI	CTNAG	2 cut(s)	236, 309
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	1 cut(s)	182
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	7 cut(s)	28, 90, 148, 205, 304, 346, 384
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	7 cut(s)	25, 87, 145, 202, 301, 343, 381
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BtgI	CCRYGG	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	182
CaiI	CAGNNNCTG	1 cut(s)	275
CfoI	GCGC	1 cut(s)	68
CviAII	CATG	3 cut(s)	333, 362, 397
CviJI	RGCY	6 cut(s)	73, 113, 212, 272, 357, 391
CviKI_1	RGCY	6 cut(s)	73, 113, 212, 272, 357, 391
DdeI	CTNAG	2 cut(s)	236, 309
DinI	GGCGCC	1 cut(s)	67
DpnI	GATC	7 cut(s)	27, 89, 147, 204, 303, 345, 383
DpnII	GATC	7 cut(s)	25, 87, 145, 202, 301, 343, 381
Eam1104I	CTCTTC	2 cut(s)	235, 396
EarI	CTCTTC	2 cut(s)	235, 396
Eco130I	CCWWGG	1 cut(s)	361
Eco31I	GGTCTC	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	361
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	3 cut(s)	336, 365, 400
FaiI	YATR	5 cut(s)	102, 334, 363, 394, 398
FatI	CATG	3 cut(s)	332, 361, 396
FokI	GGATG	1 cut(s)	169
FspBI	CTAG	1 cut(s)	242
GlaI	GCGC	1 cut(s)	67
HaeII	RGCGCY	1 cut(s)	69
HapII	CCGG	2 cut(s)	214, 372
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	3 cut(s)	336, 365, 400
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	1 cut(s)	375
HpaII	CCGG	2 cut(s)	214, 372
HphI	GGTGA	2 cut(s)	68, 276
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	3 cut(s)	372, 379, 385
Hpy8I	GTNNAC	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	56
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4V	TGCA	2 cut(s)	124, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	2 cut(s)	236, 309
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	3 cut(s)	336, 365, 400
HspAI	GCGC	1 cut(s)	66
KasI	GGCGCC	1 cut(s)	65
Kpn2I	TCCGGA	1 cut(s)	371
Kzo9I	GATC	7 cut(s)	25, 87, 145, 202, 301, 343, 381
LpnPI	CCDG	7 cut(s)	20, 39, 141, 227, 282, 288, 385
LweI	GCATC	1 cut(s)	191
MaeI	CTAG	1 cut(s)	242
MalI	GATC	7 cut(s)	27, 89, 147, 204, 303, 345, 383
MboI	GATC	7 cut(s)	25, 87, 145, 202, 301, 343, 381
MboII	GAAGA	4 cut(s)	19, 71, 222, 413
MflI	RGATCY	1 cut(s)	301
Mly113I	GGCGCC	1 cut(s)	66
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	5 cut(s)	70, 265, 292, 304, 397
MroI	TCCGGA	1 cut(s)	371
MroXI	GAANNNNTTC	1 cut(s)	221
MseI	TTAA	1 cut(s)	433
MspI	CCGG	2 cut(s)	214, 372
MspR9I	CCNGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	1 cut(s)	104
NarI	GGCGCC	1 cut(s)	66
NciI	CCSGG	1 cut(s)	214
NcoI	CCATGG	1 cut(s)	361
NdeII	GATC	7 cut(s)	25, 87, 145, 202, 301, 343, 381
NlaIII	CATG	3 cut(s)	336, 365, 400
NlaIV	GGNNCC	1 cut(s)	67
NmeAIII	GCCGAG	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	375
PluTI	GGCGCC	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	301
SaqAI	TTAA	1 cut(s)	433
Sau3AI	GATC	7 cut(s)	25, 87, 145, 202, 301, 343, 381
ScrFI	CCNGG	1 cut(s)	214
SetI	ASST	3 cut(s)	39, 75, 408
SfaNI	GCATC	1 cut(s)	191
SfoI	GGCGCC	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SspDI	GGCGCC	1 cut(s)	65
SspMI	CTAG	1 cut(s)	242
StyD4I	CCNGG	1 cut(s)	212
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	222
TaqI	TCGA	2 cut(s)	378, 384
TfiI	GAWTC	1 cut(s)	375
Tru1I	TTAA	1 cut(s)	433
Tru9I	TTAA	1 cut(s)	433
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.