Rh5AG096800

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0005897
Physical Location & Seq
Reverse (-)
8923952 .. 8925013
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG096800.1

Sequence Viewer

Length: 423 bp
ATGGAGAAGAAAGTGGTCGTAGATCACTATCAGGTTCTTGGTTTACCGTCTGGTGAGGAAGGGGCCAAGCTTGAGGACAAAGAGATCACAAAGGCGTACAGAGCAAAGGCTTTGGAGTTGCATCCAGACAAGAGACCAAACGATCCCAATGCTAATGCCGAGTTCCAAAGGCTCAACGCATCTTATGAGATACTCAATGATCCAAATGCCCGGAAACAGTTCGACTCTTCTCTGAGACTTGAGGACAAGCCTTCGGAACCAACACCAACCTCTGAACCACCACGAAGTAAGAATGAGGATCTTGACCAGGGTTACTTGTTTGTGGTTGGTTTGTTAATCTTTGTTTTAGCCCCCATGGTTTTTCCGGAATCGAGATCCAGAAGCAGTACGTCTAATAGATTAGGTTCTTATATAGAAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

140

Amino Acids

15.75

Weight (kDa)

5.27

Isoelectric Point (pI)

55.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 8 - 75 1e-19 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 364
AclWI GGATC 4 cut(s) 137, 194, 306, 369
AfaI GTAC 2 cut(s) 98, 388
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw26I GTCTC 2 cut(s) 127, 229
AlwI GGATC 4 cut(s) 137, 194, 306, 369
Aor13HI TCCGGA 1 cut(s) 364
AoxI GGCC 1 cut(s) 63
Asp700I GAANNNNTTC 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 63
AsuC2I CCSGG 1 cut(s) 211
AsuHPI GGTGA 1 cut(s) 65
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BciT130I CCWGG 1 cut(s) 308
BcnI CCSGG 1 cut(s) 211
BcoDI GTCTC 2 cut(s) 127, 229
Bme1390I CCNGG 2 cut(s) 211, 308
BmgT120I GGNCC 1 cut(s) 63
BmiI GGNNCC 2 cut(s) 64, 258
BmrFI CCNGG 2 cut(s) 211, 308
BmsI GCATC 2 cut(s) 130, 188
BpuEI CTTGAG 2 cut(s) 92, 260
BpuMI CCSGG 1 cut(s) 211
BsaBI GATNNNNATC 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 127
BsaJI CCNNGG 2 cut(s) 307, 354
BsaWI WCCGGW 1 cut(s) 364
Bse8I GATNNNNATC 1 cut(s) 27
BseAI TCCGGA 1 cut(s) 364
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 2 cut(s) 307, 354
BseGI GGATG 1 cut(s) 121
BseJI GATNNNNATC 1 cut(s) 27
BseMII CTCAG 1 cut(s) 224
BshFI GGCC 1 cut(s) 65
BsiSI CCGG 2 cut(s) 211, 365
BsmAI GTCTC 2 cut(s) 127, 229
BsnI GGCC 1 cut(s) 65
Bso31I GGTCTC 1 cut(s) 127
Bsp13I TCCGGA 1 cut(s) 364
Bsp143I GATC 6 cut(s) 22, 84, 142, 199, 298, 374
Bsp19I CCATGG 1 cut(s) 354
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 225
BspEI TCCGGA 1 cut(s) 364
BspLI GGNNCC 2 cut(s) 64, 258
BspPI GGATC 4 cut(s) 137, 194, 306, 369
BspTNI GGTCTC 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 307, 354
BssMI GATC 6 cut(s) 22, 84, 142, 199, 298, 374
BssT1I CCWWGG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 2 cut(s) 48, 219
Bst6I CTCTTC 1 cut(s) 232
BstDEI CTNAG 1 cut(s) 233
BstDSI CCRYGG 1 cut(s) 354
BstF5I GGATG 1 cut(s) 121
BstKTI GATC 6 cut(s) 25, 87, 145, 202, 301, 377
BstMAI GTCTC 2 cut(s) 127, 229
BstMBI GATC 6 cut(s) 22, 84, 142, 199, 298, 374
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 2 cut(s) 209, 306
BstX2I RGATCY 2 cut(s) 298, 374
BstYI RGATCY 2 cut(s) 298, 374
BsuRI GGCC 1 cut(s) 65
BtgI CCRYGG 1 cut(s) 354
BtsCI GGATG 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 63
Csp6I GTAC 2 cut(s) 97, 387
CviAII CATG 1 cut(s) 355
CviJI RGCY 6 cut(s) 65, 70, 110, 172, 250, 350
CviKI_1 RGCY 6 cut(s) 65, 70, 110, 172, 250, 350
CviQI GTAC 2 cut(s) 97, 387
DdeI CTNAG 1 cut(s) 233
DpnI GATC 6 cut(s) 24, 86, 144, 201, 300, 376
DpnII GATC 6 cut(s) 22, 84, 142, 199, 298, 374
Eam1104I CTCTTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 354
Eco31I GGTCTC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 1 cut(s) 358
FaiI YATR 4 cut(s) 186, 356, 411, 413
FatI CATG 1 cut(s) 354
FokI GGATG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 65
HapII CCGG 2 cut(s) 211, 365
Hin1II CATG 1 cut(s) 358
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 2 cut(s) 224, 368
HpaII CCGG 2 cut(s) 211, 365
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 44
Hpy188I TCNGA 3 cut(s) 234, 256, 274
Hpy188III TCNNGA 5 cut(s) 125, 302, 365, 372, 378
Hpy8I GTNNAC 1 cut(s) 44
HpyAV CCTTC 3 cut(s) 53, 261, 410
HpyCH4III ACNGT 2 cut(s) 48, 219
HpyCH4IV ACGT 1 cut(s) 389
HpyCH4V TGCA 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 233
HpySE526I ACGT 1 cut(s) 389
Hsp92II CATG 1 cut(s) 358
Kpn2I TCCGGA 1 cut(s) 364
Kzo9I GATC 6 cut(s) 22, 84, 142, 199, 298, 374
LpnPI CCDG 8 cut(s) 17, 36, 138, 224, 293, 320, 378, 391
LweI GCATC 2 cut(s) 130, 188
MaeII ACGT 1 cut(s) 389
MaeIII GTNAC 1 cut(s) 311
MalI GATC 6 cut(s) 24, 86, 144, 201, 300, 376
MboI GATC 6 cut(s) 22, 84, 142, 199, 298, 374
MboII GAAGA 2 cut(s) 19, 219
MflI RGATCY 2 cut(s) 298, 374
MlyI GAGTC 1 cut(s) 218
MnlI CCTC 5 cut(s) 49, 67, 235, 280, 289
MroI TCCGGA 1 cut(s) 364
MroXI GAANNNNTTC 1 cut(s) 218
MseI TTAA 1 cut(s) 335
MspI CCGG 2 cut(s) 211, 365
MspR9I CCNGG 2 cut(s) 211, 308
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 101
NciI CCSGG 1 cut(s) 211
NcoI CCATGG 1 cut(s) 354
NdeII GATC 6 cut(s) 22, 84, 142, 199, 298, 374
NlaIII CATG 1 cut(s) 358
NlaIV GGNNCC 2 cut(s) 64, 258
NmeAIII GCCGAG 1 cut(s) 184
PdmI GAANNNNTTC 1 cut(s) 218
PfeI GAWTC 1 cut(s) 368
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 2 cut(s) 64, 258
PspPI GGNCC 1 cut(s) 63
PsuI RGATCY 2 cut(s) 298, 374
RsaI GTAC 2 cut(s) 98, 388
RsaNI GTAC 2 cut(s) 97, 387
SaqAI TTAA 1 cut(s) 335
Sau3AI GATC 6 cut(s) 22, 84, 142, 199, 298, 374
Sau96I GGNCC 1 cut(s) 63
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 2 cut(s) 211, 308
SetI ASST 5 cut(s) 36, 72, 272, 392, 406
SfaNI GCATC 2 cut(s) 130, 188
SmlI CTYRAG 2 cut(s) 71, 239
SmoI CTYRAG 2 cut(s) 71, 239
StyD4I CCNGG 2 cut(s) 209, 306
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 2 cut(s) 48, 219
TaiI ACGT 1 cut(s) 392
TaqI TCGA 2 cut(s) 222, 371
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 1 cut(s) 335
Tru9I TTAA 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.