Rmu_sc0003577.1_g000007

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003577.1
OG0005897
Physical Location & Seq
Forward (+)
40315 .. 40935
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003577.1_g000007.1.cds

Sequence Viewer

Length: 621 bp
atggaggttgatcactatagggttcttgatttaccatctggtgaggacggcagcaagcataacgagaaacagattacaaaggcgtacagacaaaaggctttgcagttacatccagacaagaggccaaacgatcccaatgccaaggccaagttccaaagactcaactcatcctatgtcatactcatggatccaaatgcccggaaacagtttgactattttctaaaacgacttaaaaacaagccctcttctgaatcaaagaaaaaggccacttctgaaccaaagaaaaagacctctgaaacaaacgaagaggatcatgagactgccttgtatgtgttaggtcaccttatctttgttattgtcccgatggcttttccggctgcgagaactagattcgcttgtgcaacgagggggatttgttttgaacttgcttttgaagaactacgcagacgtcaacaattggaaaaactctggtcaatgatggttcgagtaggcgactattttaaacgaaaaactcctcaggttgctgccaatcaagagccagaatcacggggcgactattttagcttctggccttggttgttcatatattgttataaggagatttttaaaggggaattttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

206

Amino Acids

24.31

Weight (kDa)

9.45

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 594
AatII GACGTC 1 cut(s) 451
AclWI GGATC 4 cut(s) 125, 182, 195, 318
AcsI RAATTY 1 cut(s) 614
AcyI GRCGYC 1 cut(s) 448
AfaI GTAC 1 cut(s) 86
AgsI TTSAA 2 cut(s) 422, 434
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AluBI AGCT 1 cut(s) 564
AluI AGCT 1 cut(s) 564
Alw26I GTCTC 1 cut(s) 311
AlwI GGATC 4 cut(s) 125, 182, 195, 318
AoxI GGCC 4 cut(s) 122, 144, 264, 569
ApeKI GCWGC 3 cut(s) 51, 377, 524
ApoI RAATTY 1 cut(s) 614
AsuC2I CCSGG 1 cut(s) 199
AsuHPI GGTGA 2 cut(s) 53, 332
AxyI CCTNAGG 1 cut(s) 516
BamHI GGATCC 1 cut(s) 187
BbvI GCAGC 3 cut(s) 63, 364, 511
BccI CCATC 3 cut(s) 43, 358, 472
BceAI ACGGC 1 cut(s) 64
BcgI CGANNNNNNTGC 2 cut(s) 119, 153
BclI TGATCA 1 cut(s) 10
BcnI CCSGG 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 311
BfaI CTAG 1 cut(s) 387
BfmI CTRYAG 1 cut(s) 16
BisI GCNGC 3 cut(s) 52, 378, 525
BlsI GCNGC 3 cut(s) 53, 379, 526
Bme1390I CCNGG 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 199
BpuMI CCSGG 1 cut(s) 199
BsaHI GRCGYC 1 cut(s) 448
BsaJI CCNNGG 2 cut(s) 141, 572
Bse21I CCTNAGG 1 cut(s) 516
BseDI CCNNGG 2 cut(s) 141, 572
BseGI GGATG 2 cut(s) 109, 167
BseMII CTCAG 1 cut(s) 530
BseRI GAGGAG 1 cut(s) 504
BseXI GCAGC 3 cut(s) 63, 364, 511
BshFI GGCC 4 cut(s) 124, 146, 266, 571
BsiSI CCGG 2 cut(s) 199, 374
BslFI GGGAC 1 cut(s) 344
BsmAI GTCTC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 344
BsnI GGCC 4 cut(s) 124, 146, 266, 571
Bsp143I GATC 4 cut(s) 10, 130, 187, 310
BspANI GGCC 4 cut(s) 124, 146, 266, 571
BspCNI CTCAG 1 cut(s) 529
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 1 cut(s) 189
BspPI GGATC 4 cut(s) 125, 182, 195, 318
BssECI CCNNGG 2 cut(s) 141, 572
BssMI GATC 4 cut(s) 10, 130, 187, 310
BssNI GRCGYC 1 cut(s) 448
BssT1I CCWWGG 2 cut(s) 141, 572
Bst4CI ACNGT 1 cut(s) 207
Bst6I CTCTTC 2 cut(s) 250, 300
BstACI GRCGYC 1 cut(s) 448
BstC8I GCNNGC 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 516
BstEII GGTNACC 1 cut(s) 338
BstF5I GGATG 2 cut(s) 109, 167
BstKTI GATC 4 cut(s) 13, 133, 190, 313
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 4 cut(s) 10, 130, 187, 310
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstPI GGTNACC 1 cut(s) 338
BstSCI CCNGG 1 cut(s) 197
BstSFI CTRYAG 1 cut(s) 16
BstV1I GCAGC 3 cut(s) 63, 364, 511
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
Bsu36I CCTNAGG 1 cut(s) 516
BsuRI GGCC 4 cut(s) 124, 146, 266, 571
BtsCI GGATG 2 cut(s) 109, 167
Cac8I GCNNGC 1 cut(s) 56
CciI TCATGA 1 cut(s) 313
Csp6I GTAC 1 cut(s) 85
CviAII CATG 2 cut(s) 184, 314
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 1 cut(s) 516
DpnI GATC 4 cut(s) 12, 132, 189, 312
DpnII GATC 4 cut(s) 10, 130, 187, 310
DraI TTTAAA 2 cut(s) 502, 607
Eam1104I CTCTTC 2 cut(s) 250, 300
EarI CTCTTC 2 cut(s) 250, 300
Eco130I CCWWGG 2 cut(s) 141, 572
Eco81I CCTNAGG 1 cut(s) 516
Eco91I GGTNACC 1 cut(s) 338
EcoO65I GGTNACC 1 cut(s) 338
EcoT14I CCWWGG 2 cut(s) 141, 572
ErhI CCWWGG 2 cut(s) 141, 572
FaeI CATG 2 cut(s) 187, 317
FaqI GGGAC 1 cut(s) 344
FatI CATG 2 cut(s) 183, 313
FbaI TGATCA 1 cut(s) 10
Fnu4HI GCNGC 3 cut(s) 52, 378, 525
FokI GGATG 2 cut(s) 96, 154
Fsp4HI GCNGC 3 cut(s) 52, 378, 525
FspBI CTAG 1 cut(s) 387
GluI GCNGC 3 cut(s) 52, 378, 525
HaeIII GGCC 4 cut(s) 124, 146, 266, 571
HapII CCGG 2 cut(s) 199, 374
Hin1I GRCGYC 1 cut(s) 448
Hin1II CATG 2 cut(s) 187, 317
HincII GTYRAC 1 cut(s) 452
HindII GTYRAC 1 cut(s) 452
HinfI GANTC 4 cut(s) 159, 251, 390, 542
HpaII CCGG 2 cut(s) 199, 374
HphI GGTGA 2 cut(s) 53, 332
Hpy166II GTNNAC 1 cut(s) 452
Hpy188I TCNGA 3 cut(s) 250, 274, 295
Hpy188III TCNNGA 5 cut(s) 26, 113, 314, 361, 533
Hpy8I GTNNAC 1 cut(s) 452
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4IV ACGT 1 cut(s) 448
HpyCH4V TGCA 2 cut(s) 103, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpyF3I CTNAG 1 cut(s) 516
HpySE526I ACGT 1 cut(s) 448
Hsp92I GRCGYC 1 cut(s) 448
Hsp92II CATG 2 cut(s) 187, 317
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 4 cut(s) 10, 130, 187, 310
LpnPI CCDG 8 cut(s) 24, 126, 212, 387, 454, 503, 552, 553
Lsp1109I GCAGC 3 cut(s) 63, 364, 511
MaeI CTAG 1 cut(s) 387
MaeII ACGT 1 cut(s) 448
MaeIII GTNAC 2 cut(s) 105, 338
MalI GATC 4 cut(s) 12, 132, 189, 312
MboI GATC 4 cut(s) 10, 130, 187, 310
MboII GAAGA 3 cut(s) 237, 317, 446
MfeI CAATTG 1 cut(s) 455
MflI RGATCY 1 cut(s) 187
MluCI AATT 2 cut(s) 455, 614
MlyI GAGTC 1 cut(s) 153
MnlI CCTC 7 cut(s) 37, 114, 253, 301, 301, 399, 525
MseI TTAA 4 cut(s) 231, 501, 606, 619
MslI CAYNNNNRTG 1 cut(s) 182
MspI CCGG 2 cut(s) 199, 374
MspR9I CCNGG 1 cut(s) 199
MunI CAATTG 1 cut(s) 455
MwoI GCNNNNNNNGC 1 cut(s) 374
NciI CCSGG 1 cut(s) 199
NdeII GATC 4 cut(s) 10, 130, 187, 310
NlaIII CATG 2 cut(s) 187, 317
NlaIV GGNNCC 1 cut(s) 189
NmuCI GTSAC 1 cut(s) 338
PagI TCATGA 1 cut(s) 313
PfeI GAWTC 3 cut(s) 251, 390, 542
PkrI GCNGC 3 cut(s) 53, 379, 526
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
PsiI TTATAA 1 cut(s) 594
PspEI GGTNACC 1 cut(s) 338
PspN4I GGNNCC 1 cut(s) 189
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 1 cut(s) 182
SaqAI TTAA 4 cut(s) 231, 501, 606, 619
SatI GCNGC 3 cut(s) 52, 378, 525
Sau3AI GATC 4 cut(s) 10, 130, 187, 310
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 199
SetI ASST 7 cut(s) 9, 293, 340, 345, 451, 522, 566
SfcI CTRYAG 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 182
Sse9I AATT 2 cut(s) 455, 614
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 197
StyI CCWWGG 2 cut(s) 141, 572
TaaI ACNGT 1 cut(s) 207
TaiI ACGT 1 cut(s) 451
TaqI TCGA 1 cut(s) 484
TasI AATT 2 cut(s) 455, 614
TfiI GAWTC 3 cut(s) 251, 390, 542
Tru1I TTAA 4 cut(s) 231, 501, 606, 619
Tru9I TTAA 4 cut(s) 231, 501, 606, 619
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 3 cut(s) 51, 377, 524
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 1 cut(s) 571
XapI RAATTY 1 cut(s) 614
XspI CTAG 1 cut(s) 387
ZraI GACGTC 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.