FvH4_3g23920

DnaJ homolog, subfamily C, member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0005897
Physical Location & Seq
Forward (+)
17005241 .. 17006193
953 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23920.t1

Sequence Viewer

Length: 537 bp
ATGGAAAAGCAGAATTTTGTGATAGATCACTATAGGGTTCTTGATTTTCCATCTGGGGAGGAAGGCAGCAAGCTTCCTGAGAAACAGATTACAAAGGCCTATAGAGCAAAGGCTTTGCAGTTGCATCCAGACAAGAGGCCGAACGATCCCTACGCCAAAGCCATGTTCCAAAGGCTCAACTCATCCTATGCCATGCTCAAGGATCCAAAATCCCGGAAACAGTTTGACGAATCCTTTCAAAAAGGACTTGTTCTCACAAAGGACCAAGAGAATATATTGTTCGGGTTAGGTTACCTTATCTTTGTTGCTGCTCCGATGGCTTTTCCGGCTGTGAGAAATAGGAGAACCAAACTCAGTGTTGTAGCGACTGTACTTTGTTATCACCTTGTTTTCGAAGAACTACACAGATGTCAAAAACTGGAGAAATTATGGTATTGGATGGTTCGAGTGGGAGACTACTTTAAACGAAATCCTCGTCAGGCTAGTGTTTGGCTCCCCATTGCAAGGAATCGAATTTGCCCACCATCATGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

179

Amino Acids

21.0

Weight (kDa)

9.8

Isoelectric Point (pI)

49.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 9 - 76 7.8e-16 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 140, 197, 210
AcsI RAATTY 2 cut(s) 13, 513
AfaI GTAC 1 cut(s) 372
AfiI CCNNNNNNNGG 1 cut(s) 504
AgsI TTSAA 1 cut(s) 239
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
Alw26I GTCTC 1 cut(s) 447
AlwI GGATC 3 cut(s) 140, 197, 210
AoxI GGCC 2 cut(s) 96, 137
ApeKI GCWGC 2 cut(s) 66, 308
ApoI RAATTY 2 cut(s) 13, 513
ArsI GACNNNNNNTTYG 2 cut(s) 460, 492
Asp700I GAANNNNTTC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 262
AsuC2I CCSGG 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 374
AsuII TTCGAA 1 cut(s) 393
AvaII GGWCC 1 cut(s) 262
BamHI GGATCC 1 cut(s) 202
BbvI GCAGC 2 cut(s) 78, 295
BccI CCATC 4 cut(s) 58, 310, 433, 532
BcnI CCSGG 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 447
BfaI CTAG 1 cut(s) 483
BfmI CTRYAG 2 cut(s) 31, 100
BisI GCNGC 2 cut(s) 67, 309
BlsI GCNGC 2 cut(s) 68, 310
Bme1390I CCNGG 1 cut(s) 214
Bme18I GGWCC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 2 cut(s) 204, 494
BmrFI CCNGG 1 cut(s) 214
BmsI GCATC 1 cut(s) 133
BpmI CTGGAG 1 cut(s) 440
Bpu14I TTCGAA 1 cut(s) 393
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 214
Bsc4I CCNNNNNNNGG 1 cut(s) 504
Bse1I ACTGG 1 cut(s) 423
Bse3DI GCAATG 1 cut(s) 498
BseGI GGATG 3 cut(s) 124, 182, 444
BseLI CCNNNNNNNGG 1 cut(s) 504
BseMI GCAATG 1 cut(s) 498
BseMII CTCAG 2 cut(s) 69, 367
BseNI ACTGG 1 cut(s) 423
BseXI GCAGC 2 cut(s) 78, 295
BshFI GGCC 2 cut(s) 98, 139
BsiSI CCGG 2 cut(s) 214, 326
BslI CCNNNNNNNGG 1 cut(s) 504
BsmAI GTCTC 1 cut(s) 447
BsnI GGCC 2 cut(s) 98, 139
Bsp119I TTCGAA 1 cut(s) 393
Bsp143I GATC 3 cut(s) 25, 145, 202
BspANI GGCC 2 cut(s) 98, 139
BspCNI CTCAG 2 cut(s) 70, 366
BspLI GGNNCC 2 cut(s) 204, 494
BspPI GGATC 3 cut(s) 140, 197, 210
BspT104I TTCGAA 1 cut(s) 393
BsrDI GCAATG 1 cut(s) 498
BsrI ACTGG 1 cut(s) 423
BssMI GATC 3 cut(s) 25, 145, 202
Bst4CI ACNGT 2 cut(s) 222, 370
BstBI TTCGAA 1 cut(s) 393
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 2 cut(s) 78, 353
BstEII GGTNACC 1 cut(s) 290
BstF5I GGATG 3 cut(s) 124, 182, 444
BstKTI GATC 3 cut(s) 28, 148, 205
BstMAI GTCTC 1 cut(s) 447
BstMBI GATC 3 cut(s) 25, 145, 202
BstMWI GCNNNNNNNGC 3 cut(s) 104, 317, 326
BstPI GGTNACC 1 cut(s) 290
BstSCI CCNGG 1 cut(s) 212
BstSFI CTRYAG 2 cut(s) 31, 100
BstV1I GCAGC 2 cut(s) 78, 295
BstX2I RGATCY 1 cut(s) 202
BstXI CCANNNNNNTGG 1 cut(s) 528
BstYI RGATCY 1 cut(s) 202
BsuRI GGCC 2 cut(s) 98, 139
BtsCI GGATG 3 cut(s) 124, 182, 444
BtsIMutI CAGTG 1 cut(s) 361
Cac8I GCNNGC 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 262
Csp6I GTAC 1 cut(s) 371
CviAII CATG 3 cut(s) 163, 193, 528
CviQI GTAC 1 cut(s) 371
DdeI CTNAG 2 cut(s) 78, 353
DpnI GATC 3 cut(s) 27, 147, 204
DpnII GATC 3 cut(s) 25, 145, 202
DraI TTTAAA 1 cut(s) 463
Eco147I AGGCCT 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 262
Eco91I GGTNACC 1 cut(s) 290
EcoO65I GGTNACC 1 cut(s) 290
FaeI CATG 3 cut(s) 166, 196, 531
FaiI YATR 8 cut(s) 33, 102, 164, 189, 194, 275, 430, 529
FatI CATG 3 cut(s) 162, 192, 527
Fnu4HI GCNGC 2 cut(s) 67, 309
FokI GGATG 3 cut(s) 111, 169, 451
Fsp4HI GCNGC 2 cut(s) 67, 309
FspBI CTAG 1 cut(s) 483
GluI GCNGC 2 cut(s) 67, 309
GsuI CTGGAG 1 cut(s) 440
HaeIII GGCC 2 cut(s) 98, 139
HapII CCGG 2 cut(s) 214, 326
Hin1II CATG 3 cut(s) 166, 196, 531
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 2 cut(s) 230, 508
HpaII CCGG 2 cut(s) 214, 326
HphI GGTGA 1 cut(s) 374
Hpy188I TCNGA 1 cut(s) 315
Hpy188III TCNNGA 3 cut(s) 41, 77, 128
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 2 cut(s) 222, 370
HpyCH4V TGCA 3 cut(s) 118, 124, 503
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 317, 326
HpyF3I CTNAG 2 cut(s) 78, 353
Hsp92II CATG 3 cut(s) 166, 196, 531
Kzo9I GATC 3 cut(s) 25, 145, 202
LmnI GCTCC 2 cut(s) 316, 498
LpnPI CCDG 7 cut(s) 39, 90, 141, 227, 339, 404, 464
Lsp1109I GCAGC 2 cut(s) 78, 295
LweI GCATC 1 cut(s) 133
MaeI CTAG 1 cut(s) 483
MaeIII GTNAC 1 cut(s) 290
MalI GATC 3 cut(s) 27, 147, 204
MboI GATC 3 cut(s) 25, 145, 202
MboII GAAGA 1 cut(s) 407
MflI RGATCY 1 cut(s) 202
MluCI AATT 3 cut(s) 13, 425, 513
MnlI CCTC 3 cut(s) 52, 129, 483
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 1 cut(s) 462
MslI CAYNNNNRTG 1 cut(s) 526
MspI CCGG 2 cut(s) 214, 326
MspR9I CCNGG 1 cut(s) 214
MwoI GCNNNNNNNGC 3 cut(s) 104, 317, 326
NciI CCSGG 1 cut(s) 214
NdeII GATC 3 cut(s) 25, 145, 202
NlaIII CATG 3 cut(s) 166, 196, 531
NlaIV GGNNCC 2 cut(s) 204, 494
NspV TTCGAA 1 cut(s) 393
PceI AGGCCT 1 cut(s) 98
PcsI WCGNNNNNNNCGW 1 cut(s) 472
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 2 cut(s) 230, 508
PfoI TCCNGGA 1 cut(s) 212
PkrI GCNGC 2 cut(s) 68, 310
PspEI GGTNACC 1 cut(s) 290
PspN4I GGNNCC 2 cut(s) 204, 494
PspPI GGNCC 1 cut(s) 262
PsrI GAACNNNNNNTAC 2 cut(s) 134, 166
PsuI RGATCY 1 cut(s) 202
RsaI GTAC 1 cut(s) 372
RsaNI GTAC 1 cut(s) 371
RseI CAYNNNNRTG 1 cut(s) 526
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 2 cut(s) 67, 309
Sau3AI GATC 3 cut(s) 25, 145, 202
Sau96I GGNCC 1 cut(s) 262
ScrFI CCNGG 1 cut(s) 214
SetI ASST 4 cut(s) 75, 292, 297, 387
SfaNI GCATC 1 cut(s) 133
SfcI CTRYAG 2 cut(s) 31, 100
SfuI TTCGAA 1 cut(s) 393
SinI GGWCC 1 cut(s) 262
SmiMI CAYNNNNRTG 1 cut(s) 526
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 3 cut(s) 13, 425, 513
SseBI AGGCCT 1 cut(s) 98
SspMI CTAG 1 cut(s) 483
StuI AGGCCT 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 212
TaaI ACNGT 2 cut(s) 222, 370
TaqI TCGA 3 cut(s) 393, 445, 511
TasI AATT 3 cut(s) 13, 425, 513
TatI WGTACW 1 cut(s) 370
TfiI GAWTC 2 cut(s) 230, 508
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 1 cut(s) 361
TseI GCWGC 2 cut(s) 66, 308
TspRI CASTG 1 cut(s) 361
VpaK11BI GGWCC 1 cut(s) 262
XapI RAATTY 2 cut(s) 13, 513
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.