RLG00000031942

DnaJ homolog, subfamily C, member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005897
Physical Location & Seq
Forward (+)
9689821 .. 9690775
955 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031942

Sequence Viewer

Length: 483 bp
ATGGCGGTGGAAGACGCAGGCAAGACCTTAGCTTCGGAAGATCAGAGCAAGACGGAGTCGAACCCTAAATCAATGCAAGACGAGAACGAGCTCGTGAAAGGAGAGATCGTCCGCGGCGGCGAGGAGGATTTATTAATTAAAAAGATCAATATGGAGAAGAAGAAAGTGGTCGTAGATCATTATAGGGTTCTTGGTTTACCATCTGCTGAGGAAGGCAGCAAGCTTAACGAGAAAGAGATTACAAAGGCATACAGATCAAAGGCTTTGCAGTTGCATCCAGACAAGAGGCCAAACGATCCCAATGCCAAGGTCAAGTTCCAAAAGCTCAACTCATCCTATGAGATACTCATGGATCCAAAAGCCCGGAAACAGTTTGACTCTTCTATAAGACTAGACAATAAACCATCCCCTCAGCCGAAAAATAAAGGCCTGCAAACCAAAAAAAAATGGCCTCTAAACGAAACTGGGACGACGATGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

161

Amino Acids

18.12

Weight (kDa)

9.42

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 59 - 126 1.3e-19 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 114
AciI CCGC 4 cut(s) 5, 112, 114, 117
AclWI GGATC 3 cut(s) 290, 347, 360
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AluBI AGCT 4 cut(s) 32, 91, 223, 325
AluI AGCT 4 cut(s) 32, 91, 223, 325
Alw21I GWGCWC 1 cut(s) 93
AlwI GGATC 3 cut(s) 290, 347, 360
AoxI GGCC 3 cut(s) 287, 427, 449
ApeKI GCWGC 1 cut(s) 216
ArsI GACNNNNNNTTYG 2 cut(s) 16, 48
AseI ATTAAT 1 cut(s) 134
AsuC2I CCSGG 1 cut(s) 364
BamHI GGATCC 1 cut(s) 352
BanII GRGCYC 1 cut(s) 93
BauI CACGAG 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 93
BbvCI CCTCAGC 2 cut(s) 207, 411
BbvI GCAGC 1 cut(s) 228
BccI CCATC 2 cut(s) 208, 412
BcgI CGANNNNNNTGC 2 cut(s) 284, 318
BcnI CCSGG 1 cut(s) 364
BfaI CTAG 1 cut(s) 392
BisI GCNGC 3 cut(s) 115, 118, 217
BlsI GCNGC 3 cut(s) 116, 119, 218
Bme1390I CCNGG 1 cut(s) 364
BmiI GGNNCC 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 364
BmrI ACTGGG 1 cut(s) 474
BmsI GCATC 1 cut(s) 283
BmuI ACTGGG 1 cut(s) 474
BpiI GAAGAC 1 cut(s) 18
Bpu10I CCTNAGC 3 cut(s) 28, 207, 411
BpuMI CCSGG 1 cut(s) 364
BsaJI CCNNGG 2 cut(s) 112, 306
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bse1I ACTGG 1 cut(s) 469
BseDI CCNNGG 2 cut(s) 112, 306
BseGI GGATG 3 cut(s) 274, 332, 404
BseMII CTCAG 2 cut(s) 198, 425
BseNI ACTGG 1 cut(s) 469
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 228
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 3 cut(s) 289, 429, 451
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 1 cut(s) 364
BsnI GGCC 3 cut(s) 289, 429, 451
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 7 cut(s) 40, 105, 144, 175, 254, 295, 352
BspACI CCGC 4 cut(s) 5, 112, 114, 117
BspANI GGCC 3 cut(s) 289, 429, 451
BspCNI CTCAG 2 cut(s) 199, 424
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 354
BspPI GGATC 3 cut(s) 290, 347, 360
BsrI ACTGG 1 cut(s) 469
BssECI CCNNGG 2 cut(s) 112, 306
BssMI GATC 7 cut(s) 40, 105, 144, 175, 254, 295, 352
BssSI CACGAG 1 cut(s) 92
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 92
Bst4CI ACNGT 1 cut(s) 372
Bst6I CTCTTC 1 cut(s) 385
BstC8I GCNNGC 3 cut(s) 19, 221, 431
BstDEI CTNAG 3 cut(s) 28, 207, 411
BstDSI CCRYGG 1 cut(s) 112
BstF5I GGATG 3 cut(s) 274, 332, 404
BstFNI CGCG 1 cut(s) 114
BstKTI GATC 7 cut(s) 43, 108, 147, 178, 257, 298, 355
BstMBI GATC 7 cut(s) 40, 105, 144, 175, 254, 295, 352
BstSCI CCNGG 1 cut(s) 362
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 228
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BsuRI GGCC 3 cut(s) 289, 429, 451
BtgI CCRYGG 1 cut(s) 112
BtsCI GGATG 3 cut(s) 274, 332, 404
Cac8I GCNNGC 3 cut(s) 19, 221, 431
Cfr42I CCGCGG 1 cut(s) 115
CseI GACGC 1 cut(s) 23
CviAII CATG 1 cut(s) 349
DdeI CTNAG 3 cut(s) 28, 207, 411
DpnI GATC 7 cut(s) 42, 107, 146, 177, 256, 297, 354
DpnII GATC 7 cut(s) 40, 105, 144, 175, 254, 295, 352
Eam1104I CTCTTC 1 cut(s) 385
EarI CTCTTC 1 cut(s) 385
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 306
Eco147I AGGCCT 1 cut(s) 429
Eco24I GRGCYC 1 cut(s) 93
Eco53kI GAGCTC 1 cut(s) 91
EcoICRI GAGCTC 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 1 cut(s) 352
FaiI YATR 6 cut(s) 152, 183, 250, 339, 350, 386
FatI CATG 1 cut(s) 348
Fnu4HI GCNGC 3 cut(s) 115, 118, 217
FokI GGATG 3 cut(s) 261, 319, 391
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 3 cut(s) 115, 118, 217
FspBI CTAG 1 cut(s) 392
GluI GCNGC 3 cut(s) 115, 118, 217
HaeIII GGCC 3 cut(s) 289, 429, 451
HapII CCGG 1 cut(s) 364
HgaI GACGC 1 cut(s) 23
Hin1II CATG 1 cut(s) 352
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 2 cut(s) 56, 377
HpaII CCGG 1 cut(s) 364
Hpy166II GTNNAC 1 cut(s) 197
Hpy188I TCNGA 2 cut(s) 37, 45
Hpy188III TCNNGA 2 cut(s) 94, 278
Hpy8I GTNNAC 1 cut(s) 197
Hpy99I CGWCG 1 cut(s) 475
HpyAV CCTTC 1 cut(s) 206
HpyCH4III ACNGT 1 cut(s) 372
HpyCH4V TGCA 4 cut(s) 76, 268, 274, 433
HpyF3I CTNAG 3 cut(s) 28, 207, 411
Hsp92II CATG 1 cut(s) 352
KspI CCGCGG 1 cut(s) 115
Kzo9I GATC 7 cut(s) 40, 105, 144, 175, 254, 295, 352
LpnPI CCDG 5 cut(s) 3, 291, 377, 443, 450
Lsp1109I GCAGC 1 cut(s) 228
LweI GCATC 1 cut(s) 283
MaeI CTAG 1 cut(s) 392
MalI GATC 7 cut(s) 42, 107, 146, 177, 256, 297, 354
MboI GATC 7 cut(s) 40, 105, 144, 175, 254, 295, 352
MboII GAAGA 5 cut(s) 23, 50, 169, 172, 372
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 1 cut(s) 135
MlyI GAGTC 2 cut(s) 65, 371
MnlI CCTC 6 cut(s) 115, 118, 202, 279, 420, 462
MseI TTAA 3 cut(s) 134, 138, 225
MspA1I CMGCKG 1 cut(s) 114
MspI CCGG 1 cut(s) 364
MspR9I CCNGG 1 cut(s) 364
MvnI CGCG 1 cut(s) 114
NciI CCSGG 1 cut(s) 364
NdeII GATC 7 cut(s) 40, 105, 144, 175, 254, 295, 352
NlaIII CATG 1 cut(s) 352
NlaIV GGNNCC 1 cut(s) 354
PacI TTAATTAA 1 cut(s) 138
PceI AGGCCT 1 cut(s) 429
PflFI GACNNNGTC 1 cut(s) 55
PkrI GCNGC 3 cut(s) 116, 119, 218
PleI GAGTC 2 cut(s) 64, 371
PpsI GAGTC 2 cut(s) 64, 371
PshBI ATTAAT 1 cut(s) 134
Psp124BI GAGCTC 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 354
PsuI RGATCY 1 cut(s) 352
PsyI GACNNNGTC 1 cut(s) 55
SacI GAGCTC 1 cut(s) 93
SacII CCGCGG 1 cut(s) 115
SaqAI TTAA 3 cut(s) 134, 138, 225
SatI GCNGC 3 cut(s) 115, 118, 217
Sau3AI GATC 7 cut(s) 40, 105, 144, 175, 254, 295, 352
SchI GAGTC 2 cut(s) 65, 371
ScrFI CCNGG 1 cut(s) 364
SduI GDGCHC 1 cut(s) 93
SetI ASST 6 cut(s) 29, 34, 93, 225, 312, 327
SfaNI GCATC 1 cut(s) 283
Sfr303I CCGCGG 1 cut(s) 115
SgrBI CCGCGG 1 cut(s) 115
Sse9I AATT 1 cut(s) 135
SseBI AGGCCT 1 cut(s) 429
SsiI CCGC 4 cut(s) 5, 112, 114, 117
SspMI CTAG 1 cut(s) 392
SstI GAGCTC 1 cut(s) 93
StuI AGGCCT 1 cut(s) 429
StyD4I CCNGG 1 cut(s) 362
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 372
TaqI TCGA 1 cut(s) 59
TasI AATT 1 cut(s) 135
TauI GCSGC 2 cut(s) 117, 120
Tru1I TTAA 3 cut(s) 134, 138, 225
Tru9I TTAA 3 cut(s) 134, 138, 225
TseI GCWGC 1 cut(s) 216
TspGWI ACGGA 1 cut(s) 68
Tth111I GACNNNGTC 1 cut(s) 55
VspI ATTAAT 1 cut(s) 134
XspI CTAG 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.