Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005897

Physical Location & Seq

Genomic Coordinates Reverse (-)

8323990 .. 8325231

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG093100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAGAAGAAAGTGGTCGTAGATCACTATCAGGTTCTTGGTTTACCGTCTGGTGAGGAAGGGGCCAAGCTTGAGGACAAAGAGATCACAAAGGCGTACAGAGCAAAGGCTTTGAAGTTGCATCCAGACAAGAGACCAAACGATCCCAATGCGAATGCCGAGTTCCAAAGGCTCAACGCATCCTATGAGATACTCAATGATCCAAATGCCCGGAAACAGTTCGACTCTTCTCTGAGACTTGAGGACAAGCCTTCGGAACCAACACCAACCTCTGAACCACCACCAAGTAAGAATGAGGATCTTGACCAGGGTTACTTGTTTGTGGTTGGTTTGTTAATCTTTGTTTTAGCCCCCATGGTTTTTCCGGAATCCAGATCTAGAAGCAGTACGTCGAATAGGTTGGGTTCTTATATAGAAGGGTTCTTTAAATTACCCAAACGTGAAAGATTGGATCTCTGGTCGGGGATGATTCGACTAGGTCAATATTTTAAACGCAGACCACCTCCTCCTCAGGCTACCACCAATCAAGAACCACAAGTAGAAGATCACGAAGATAATCAAGAATCACTAGTAGAGGATCATGAAGATATTGAGGATTGGGTGATGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

203

Amino Acids

23.29

Weight (kDa)

5.07

Isoelectric Point (pI)

60.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	8 - 75	1.2e-19	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005897)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07361 FvH4_2g26761 FvH4_3g06550 FvH4_3g23920 FvH4_6g40672 FvH4_6g40673
rosa_laevigata	RLG00000031929 RLG00000031940 RLG00000031942 RLG00000031943
rosa_multiflora	Rmu_co8501271.1_g000001 Rmu_sc0002639.1_g000011 Rmu_sc0003577.1_g000007
rosa_roxburghii	Rroxscaffold_1G00063980 Rroxscaffold_1G00064060
rosa_rugosa	Rorug05G0003000 Rorug05G0003100.1 Rorug05G0003200 Rorug06G0097300 Rorug06G0146800
rosa_samantha	Rh5AG096800 Rh5BG093100 Rh5BG093200 Rh5BG093300 Rh5BG094800 Rh5CG105900 Rh5DG092500
rosa_wichuraiana	Rw5G008480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	364
AclWI	GGATC	5 cut(s)	137, 194, 306, 459, 585
AfaI	GTAC	2 cut(s)	98, 388
AgsI	TTSAA	1 cut(s)	115
AhlI	ACTAGT	1 cut(s)	568
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw26I	GTCTC	2 cut(s)	127, 229
AlwI	GGATC	5 cut(s)	137, 194, 306, 459, 585
Aor13HI	TCCGGA	1 cut(s)	364
AoxI	GGCC	1 cut(s)	63
Asp700I	GAANNNNTTC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	63
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	65
AxyI	CCTNAGG	1 cut(s)	510
BccI	CCATC	1 cut(s)	598
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	1 cut(s)	308
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	2 cut(s)	127, 229
BcuI	ACTAGT	1 cut(s)	568
BfaI	CTAG	3 cut(s)	378, 476, 569
BglII	AGATCT	1 cut(s)	374
Bme1390I	CCNGG	2 cut(s)	211, 308
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	2 cut(s)	64, 258
BmrFI	CCNGG	2 cut(s)	211, 308
BmsI	GCATC	2 cut(s)	130, 188
BpuEI	CTTGAG	2 cut(s)	92, 260
BpuMI	CCSGG	1 cut(s)	211
BsaBI	GATNNNNATC	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	127
BsaJI	CCNNGG	2 cut(s)	307, 354
BsaWI	WCCGGW	1 cut(s)	364
Bse21I	CCTNAGG	1 cut(s)	510
Bse8I	GATNNNNATC	1 cut(s)	27
BseAI	TCCGGA	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	2 cut(s)	307, 354
BseGI	GGATG	3 cut(s)	121, 179, 471
BseJI	GATNNNNATC	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	224, 524
BseRI	GAGGAG	2 cut(s)	495, 498
BshFI	GGCC	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	211, 365
BsmAI	GTCTC	2 cut(s)	127, 229
BsmI	GAATGC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	65
Bso31I	GGTCTC	1 cut(s)	127
Bsp13I	TCCGGA	1 cut(s)	364
Bsp143I	GATC	9 cut(s)	22, 84, 142, 199, 298, 374, 451, 544, 577
Bsp19I	CCATGG	1 cut(s)	354
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	2 cut(s)	225, 523
BspEI	TCCGGA	1 cut(s)	364
BspHI	TCATGA	1 cut(s)	580
BspLI	GGNNCC	2 cut(s)	64, 258
BspPI	GGATC	5 cut(s)	137, 194, 306, 459, 585
BspTNI	GGTCTC	1 cut(s)	127
BssECI	CCNNGG	2 cut(s)	307, 354
BssMI	GATC	9 cut(s)	22, 84, 142, 199, 298, 374, 451, 544, 577
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	48, 219
Bst6I	CTCTTC	1 cut(s)	232
BstDEI	CTNAG	2 cut(s)	233, 510
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	3 cut(s)	121, 179, 471
BstKTI	GATC	9 cut(s)	25, 87, 145, 202, 301, 377, 454, 547, 580
BstMAI	GTCTC	2 cut(s)	127, 229
BstMBI	GATC	9 cut(s)	22, 84, 142, 199, 298, 374, 451, 544, 577
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNI	CCWGG	1 cut(s)	308
BstSCI	CCNGG	2 cut(s)	209, 306
BstX2I	RGATCY	3 cut(s)	298, 374, 451
BstYI	RGATCY	3 cut(s)	298, 374, 451
Bsu36I	CCTNAGG	1 cut(s)	510
BsuRI	GGCC	1 cut(s)	65
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	3 cut(s)	121, 179, 471
CciI	TCATGA	1 cut(s)	580
Cfr13I	GGNCC	1 cut(s)	63
Csp6I	GTAC	2 cut(s)	97, 387
CviAII	CATG	2 cut(s)	355, 581
CviJI	RGCY	7 cut(s)	65, 70, 110, 172, 250, 350, 515
CviKI_1	RGCY	7 cut(s)	65, 70, 110, 172, 250, 350, 515
CviQI	GTAC	2 cut(s)	97, 387
DdeI	CTNAG	2 cut(s)	233, 510
DpnI	GATC	9 cut(s)	24, 86, 144, 201, 300, 376, 453, 546, 579
DpnII	GATC	9 cut(s)	22, 84, 142, 199, 298, 374, 451, 544, 577
DraI	TTTAAA	2 cut(s)	427, 490
Eam1104I	CTCTTC	1 cut(s)	232
EarI	CTCTTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	354
Eco31I	GGTCTC	1 cut(s)	127
Eco81I	CCTNAGG	1 cut(s)	510
EcoRII	CCWGG	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	2 cut(s)	358, 584
FaiI	YATR	5 cut(s)	186, 356, 411, 413, 582
FatI	CATG	2 cut(s)	354, 580
FokI	GGATG	3 cut(s)	108, 166, 478
FspBI	CTAG	3 cut(s)	378, 476, 569
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	2 cut(s)	211, 365
Hin1II	CATG	2 cut(s)	358, 584
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	4 cut(s)	224, 368, 469, 563
HpaII	CCGG	2 cut(s)	211, 365
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	3 cut(s)	234, 256, 274
Hpy188III	TCNNGA	9 cut(s)	125, 302, 365, 372, 378, 527, 548, 560, 581
Hpy8I	GTNNAC	1 cut(s)	44
Hpy99I	CGWCG	1 cut(s)	394
HpyAV	CCTTC	3 cut(s)	53, 261, 410
HpyCH4III	ACNGT	2 cut(s)	48, 219
HpyCH4IV	ACGT	2 cut(s)	389, 439
HpyCH4V	TGCA	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	2 cut(s)	233, 510
HpySE526I	ACGT	2 cut(s)	389, 439
Hsp92II	CATG	2 cut(s)	358, 584
Kpn2I	TCCGGA	1 cut(s)	364
Kzo9I	GATC	9 cut(s)	22, 84, 142, 199, 298, 374, 451, 544, 577
LweI	GCATC	2 cut(s)	130, 188
MaeI	CTAG	3 cut(s)	378, 476, 569
MaeII	ACGT	2 cut(s)	389, 439
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	9 cut(s)	24, 86, 144, 201, 300, 376, 453, 546, 579
MboI	GATC	9 cut(s)	22, 84, 142, 199, 298, 374, 451, 544, 577
MboII	GAAGA	5 cut(s)	19, 219, 554, 563, 596
MflI	RGATCY	3 cut(s)	298, 374, 451
MluCI	AATT	1 cut(s)	428
MlyI	GAGTC	1 cut(s)	218
MroI	TCCGGA	1 cut(s)	364
MroXI	GAANNNNTTC	1 cut(s)	218
MseI	TTAA	4 cut(s)	335, 426, 489, 610
MspI	CCGG	2 cut(s)	211, 365
MspR9I	CCNGG	2 cut(s)	211, 308
Mva1269I	GAATGC	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	1 cut(s)	101
NciI	CCSGG	1 cut(s)	211
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	9 cut(s)	22, 84, 142, 199, 298, 374, 451, 544, 577
NlaIII	CATG	2 cut(s)	358, 584
NlaIV	GGNNCC	2 cut(s)	64, 258
NmeAIII	GCCGAG	1 cut(s)	184
PagI	TCATGA	1 cut(s)	580
PctI	GAATGC	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	3 cut(s)	368, 469, 563
PflFI	GACNNNGTC	1 cut(s)	477
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	2 cut(s)	64, 258
PspPI	GGNCC	1 cut(s)	63
PsuI	RGATCY	3 cut(s)	298, 374, 451
PsyI	GACNNNGTC	1 cut(s)	477
RsaI	GTAC	2 cut(s)	98, 388
RsaNI	GTAC	2 cut(s)	97, 387
SaqAI	TTAA	4 cut(s)	335, 426, 489, 610
Sau3AI	GATC	9 cut(s)	22, 84, 142, 199, 298, 374, 451, 544, 577
Sau96I	GGNCC	1 cut(s)	63
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	2 cut(s)	211, 308
SetI	ASST	8 cut(s)	36, 72, 272, 392, 401, 442, 481, 505
SfaNI	GCATC	2 cut(s)	130, 188
SmlI	CTYRAG	2 cut(s)	71, 239
SmoI	CTYRAG	2 cut(s)	71, 239
SpeI	ACTAGT	1 cut(s)	568
Sse9I	AATT	1 cut(s)	428
SspI	AATATT	1 cut(s)	485
SspMI	CTAG	3 cut(s)	378, 476, 569
StyD4I	CCNGG	2 cut(s)	209, 306
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	2 cut(s)	48, 219
TaiI	ACGT	2 cut(s)	392, 442
TaqI	TCGA	3 cut(s)	222, 392, 472
TasI	AATT	1 cut(s)	428
TfiI	GAWTC	3 cut(s)	368, 469, 563
Tru1I	TTAA	4 cut(s)	335, 426, 489, 610
Tru9I	TTAA	4 cut(s)	335, 426, 489, 610
TspDTI	ATGAA	1 cut(s)	597
Tth111I	GACNNNGTC	1 cut(s)	477
XbaI	TCTAGA	1 cut(s)	377
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	3 cut(s)	378, 476, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.