RLG00000031929

DnaJ homolog, subfamily C, member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005897
Physical Location & Seq
Reverse (-)
9592522 .. 9593263
742 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031929

Sequence Viewer

Length: 513 bp
ATGGAGAAGAAAGTGGTCGTAGATCACTATCAGGTTCTTGGTTTACCGTCTGGTGAGGAAGGGGCCAAGCTTGAGGACAAAGAGATCACAAAGGCGTACAGAGCAAAGGCTTTAGAGTTGCATCCAGACAAGAGACCAAACGATCCCAATGCGAATGTCGAGTTCCAAAGGCTCAACGCATCCTACGAGATACTCAATGATCCAAATGCCCGGAAACAGTTCGATTCTTCTCTGAGACTTGAGGACAAACCTTCGGAACCAACACCAACCTCTGAACCGCCACCAAGTAAGAATGAGGATCTTGACCAGGGTTACTTGTTTGTGGTTGGTTTGTTAATCTTTGTTTTAGCCCCCATGGTTTTTCCGGAATCGAGATCTAGAAGCAGTACGTCGAATAGACCACCTCCTCCTCAGGCTACCACCAATCAAGAACCACAAGTAGAAGATCACGAAGATAATCATGAATCACTAGTAGAGGATCATGAAGATATTGAGGATTGGGTGATGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

171

Amino Acids

19.29

Weight (kDa)

4.61

Isoelectric Point (pI)

61.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 8 - 75 3.2e-19 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 364
AciI CCGC 1 cut(s) 278
AclWI GGATC 4 cut(s) 137, 194, 306, 486
AfaI GTAC 2 cut(s) 98, 388
AhlI ACTAGT 1 cut(s) 469
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw26I GTCTC 2 cut(s) 127, 229
AlwI GGATC 4 cut(s) 137, 194, 306, 486
Aor13HI TCCGGA 1 cut(s) 364
AoxI GGCC 1 cut(s) 63
Asp700I GAANNNNTTC 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 63
AsuC2I CCSGG 1 cut(s) 211
AsuHPI GGTGA 1 cut(s) 65
AxyI CCTNAGG 1 cut(s) 411
BccI CCATC 1 cut(s) 499
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BciT130I CCWGG 1 cut(s) 308
BcnI CCSGG 1 cut(s) 211
BcoDI GTCTC 2 cut(s) 127, 229
BcuI ACTAGT 1 cut(s) 469
BfaI CTAG 2 cut(s) 378, 470
BglII AGATCT 1 cut(s) 374
Bme1390I CCNGG 2 cut(s) 211, 308
BmgT120I GGNCC 1 cut(s) 63
BmiI GGNNCC 2 cut(s) 64, 258
BmrFI CCNGG 2 cut(s) 211, 308
BmsI GCATC 2 cut(s) 130, 188
BpuEI CTTGAG 2 cut(s) 92, 260
BpuMI CCSGG 1 cut(s) 211
BsaBI GATNNNNATC 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 127
BsaJI CCNNGG 2 cut(s) 307, 354
BsaWI WCCGGW 1 cut(s) 364
Bse21I CCTNAGG 1 cut(s) 411
Bse8I GATNNNNATC 1 cut(s) 27
BseAI TCCGGA 1 cut(s) 364
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 2 cut(s) 307, 354
BseGI GGATG 2 cut(s) 121, 179
BseJI GATNNNNATC 1 cut(s) 27
BseMII CTCAG 2 cut(s) 224, 425
BseRI GAGGAG 2 cut(s) 396, 399
BshFI GGCC 1 cut(s) 65
BsiSI CCGG 2 cut(s) 211, 365
BsmAI GTCTC 2 cut(s) 127, 229
BsnI GGCC 1 cut(s) 65
Bso31I GGTCTC 1 cut(s) 127
Bsp13I TCCGGA 1 cut(s) 364
Bsp143I GATC 8 cut(s) 22, 84, 142, 199, 298, 374, 445, 478
Bsp19I CCATGG 1 cut(s) 354
BspACI CCGC 1 cut(s) 278
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 2 cut(s) 225, 424
BspEI TCCGGA 1 cut(s) 364
BspHI TCATGA 2 cut(s) 460, 481
BspLI GGNNCC 2 cut(s) 64, 258
BspPI GGATC 4 cut(s) 137, 194, 306, 486
BspTNI GGTCTC 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 307, 354
BssMI GATC 8 cut(s) 22, 84, 142, 199, 298, 374, 445, 478
BssT1I CCWWGG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 2 cut(s) 48, 219
BstDEI CTNAG 2 cut(s) 233, 411
BstDSI CCRYGG 1 cut(s) 354
BstF5I GGATG 2 cut(s) 121, 179
BstKTI GATC 8 cut(s) 25, 87, 145, 202, 301, 377, 448, 481
BstMAI GTCTC 2 cut(s) 127, 229
BstMBI GATC 8 cut(s) 22, 84, 142, 199, 298, 374, 445, 478
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 2 cut(s) 209, 306
BstX2I RGATCY 2 cut(s) 298, 374
BstYI RGATCY 2 cut(s) 298, 374
Bsu36I CCTNAGG 1 cut(s) 411
BsuRI GGCC 1 cut(s) 65
BtgI CCRYGG 1 cut(s) 354
BtsCI GGATG 2 cut(s) 121, 179
CciI TCATGA 2 cut(s) 460, 481
Cfr13I GGNCC 1 cut(s) 63
Csp6I GTAC 2 cut(s) 97, 387
CviAII CATG 3 cut(s) 355, 461, 482
CviJI RGCY 6 cut(s) 65, 70, 110, 172, 350, 416
CviKI_1 RGCY 6 cut(s) 65, 70, 110, 172, 350, 416
CviQI GTAC 2 cut(s) 97, 387
DdeI CTNAG 2 cut(s) 233, 411
DpnI GATC 8 cut(s) 24, 86, 144, 201, 300, 376, 447, 480
DpnII GATC 8 cut(s) 22, 84, 142, 199, 298, 374, 445, 478
Eco130I CCWWGG 1 cut(s) 354
Eco31I GGTCTC 1 cut(s) 127
Eco81I CCTNAGG 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 3 cut(s) 358, 464, 485
FaiI YATR 3 cut(s) 356, 462, 483
FatI CATG 3 cut(s) 354, 460, 481
FokI GGATG 2 cut(s) 108, 166
FspBI CTAG 2 cut(s) 378, 470
HaeIII GGCC 1 cut(s) 65
HapII CCGG 2 cut(s) 211, 365
Hin1II CATG 3 cut(s) 358, 464, 485
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 3 cut(s) 224, 368, 464
HpaII CCGG 2 cut(s) 211, 365
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 44
Hpy188I TCNGA 3 cut(s) 234, 256, 274
Hpy188III TCNNGA 9 cut(s) 125, 302, 365, 372, 378, 428, 449, 461, 482
Hpy8I GTNNAC 1 cut(s) 44
Hpy99I CGWCG 1 cut(s) 394
HpyAV CCTTC 2 cut(s) 53, 261
HpyCH4III ACNGT 2 cut(s) 48, 219
HpyCH4IV ACGT 1 cut(s) 389
HpyCH4V TGCA 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 2 cut(s) 233, 411
HpySE526I ACGT 1 cut(s) 389
Hsp92II CATG 3 cut(s) 358, 464, 485
Kpn2I TCCGGA 1 cut(s) 364
Kzo9I GATC 8 cut(s) 22, 84, 142, 199, 298, 374, 445, 478
LpnPI CCDG 8 cut(s) 17, 36, 138, 224, 293, 320, 378, 398
LweI GCATC 2 cut(s) 130, 188
MaeI CTAG 2 cut(s) 378, 470
MaeII ACGT 1 cut(s) 389
MaeIII GTNAC 1 cut(s) 311
MalI GATC 8 cut(s) 24, 86, 144, 201, 300, 376, 447, 480
MboI GATC 8 cut(s) 22, 84, 142, 199, 298, 374, 445, 478
MboII GAAGA 5 cut(s) 19, 219, 455, 464, 497
MflI RGATCY 2 cut(s) 298, 374
MroI TCCGGA 1 cut(s) 364
MroXI GAANNNNTTC 1 cut(s) 218
MseI TTAA 2 cut(s) 335, 511
MspI CCGG 2 cut(s) 211, 365
MspR9I CCNGG 2 cut(s) 211, 308
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 101
NciI CCSGG 1 cut(s) 211
NcoI CCATGG 1 cut(s) 354
NdeII GATC 8 cut(s) 22, 84, 142, 199, 298, 374, 445, 478
NlaIII CATG 3 cut(s) 358, 464, 485
NlaIV GGNNCC 2 cut(s) 64, 258
PagI TCATGA 2 cut(s) 460, 481
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PdmI GAANNNNTTC 1 cut(s) 218
PfeI GAWTC 3 cut(s) 224, 368, 464
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 2 cut(s) 64, 258
PspPI GGNCC 1 cut(s) 63
PsuI RGATCY 2 cut(s) 298, 374
RsaI GTAC 2 cut(s) 98, 388
RsaNI GTAC 2 cut(s) 97, 387
SaqAI TTAA 2 cut(s) 335, 511
Sau3AI GATC 8 cut(s) 22, 84, 142, 199, 298, 374, 445, 478
Sau96I GGNCC 1 cut(s) 63
ScrFI CCNGG 2 cut(s) 211, 308
SetI ASST 6 cut(s) 36, 72, 253, 272, 392, 406
SfaNI GCATC 2 cut(s) 130, 188
SmlI CTYRAG 2 cut(s) 71, 239
SmoI CTYRAG 2 cut(s) 71, 239
SpeI ACTAGT 1 cut(s) 469
SsiI CCGC 1 cut(s) 278
SspMI CTAG 2 cut(s) 378, 470
StyD4I CCNGG 2 cut(s) 209, 306
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 2 cut(s) 48, 219
TaiI ACGT 1 cut(s) 392
TaqI TCGA 4 cut(s) 159, 222, 371, 392
TfiI GAWTC 3 cut(s) 224, 368, 464
Tru1I TTAA 2 cut(s) 335, 511
Tru9I TTAA 2 cut(s) 335, 511
TspDTI ATGAA 2 cut(s) 477, 498
XbaI TCTAGA 1 cut(s) 377
XmnI GAANNNNTTC 1 cut(s) 218
XspI CTAG 2 cut(s) 378, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.