Rh5BG094800

DnaJ homolog, subfamily C, member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0005897
Physical Location & Seq
Forward (+)
8613064 .. 8613760
697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG094800.1

Sequence Viewer

Length: 603 bp
ATGGAGAAGAAGAAAGTGGTCGTAGATCACTATAGGGTTCTTGGTTTACCATCTGGTGAGGAAGGCAGCAAGCTTAACAAGAAAGAGATTACAAAGGCATACAGAGCAAAGGCTTTGCAGTTGCATCCAGACAAGAGGCCAAACGATCCCAATGCCAAGGTCAAGTTCCAAAAGCTCAACTCATCCTATGAGATACTCATGGATCCAAAAGCCCGGAAACAGTTTGACTCTTCTATAAGACTAGACAATAAGCCATCCCCTCAACCAGAAAAAAAGGCCTGCAAACCAAAAGAAAGGGCCTCTGAACCAAAAAAAATGGCCTCTAAACGAAACTGGGACGACGACGAAGTGCTCATGTATGGTTTCTTTATCATTGTTTTGGCTCCCATGGTTTTTCCGGCTGCGAGATCCCAAACCTTTATCGCAATCAGGTCGTTATTTTTTCTGTTTGCGACTGATGAAATTTGCTTGCGTAAAGATTCAGTCCACTCGATGTTGGTTCGAGTAGGCAACTTTTTTAAACACAAGCCCTCTGAGGCTGCCAACAATCAAGAATCACAAGGAGACGATCATGAAGATATTGAGGATTGGGTGATCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

200

Amino Acids

23.01

Weight (kDa)

9.28

Isoelectric Point (pI)

55.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 9 - 76 2e-19 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 140, 197, 210, 402
AcsI RAATTY 1 cut(s) 462
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AluBI AGCT 2 cut(s) 73, 175
AluI AGCT 2 cut(s) 73, 175
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 1 cut(s) 558
AlwI GGATC 4 cut(s) 140, 197, 210, 402
AoxI GGCC 4 cut(s) 137, 276, 297, 318
ApeKI GCWGC 3 cut(s) 66, 401, 539
ApoI RAATTY 1 cut(s) 462
AspS9I GGNCC 1 cut(s) 297
AsuC2I CCSGG 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 68
BamHI GGATCC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 3 cut(s) 78, 388, 526
BccI CCATC 2 cut(s) 58, 262
BcgI CGANNNNNNTGC 4 cut(s) 134, 168, 414, 448
BcnI CCSGG 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 558
BfaI CTAG 1 cut(s) 242
BfmI CTRYAG 1 cut(s) 31
BisI GCNGC 3 cut(s) 67, 402, 540
BlsI GCNGC 3 cut(s) 68, 403, 541
Bme1390I CCNGG 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 297
BmiI GGNNCC 2 cut(s) 204, 384
BmrFI CCNGG 1 cut(s) 214
BmrI ACTGGG 1 cut(s) 343
BmsI GCATC 1 cut(s) 133
BmuI ACTGGG 1 cut(s) 343
BpuMI CCSGG 1 cut(s) 214
BsaJI CCNNGG 2 cut(s) 156, 387
Bse1I ACTGG 1 cut(s) 338
BseDI CCNNGG 2 cut(s) 156, 387
BseGI GGATG 3 cut(s) 124, 182, 254
BseMII CTCAG 1 cut(s) 525
BseNI ACTGG 1 cut(s) 338
BseXI GCAGC 3 cut(s) 78, 388, 526
BshFI GGCC 4 cut(s) 139, 278, 299, 320
BsiHKAI GWGCWC 1 cut(s) 354
BsiSI CCGG 2 cut(s) 214, 398
BslFI GGGAC 1 cut(s) 350
BsmAI GTCTC 1 cut(s) 558
BsmBI CGTCTC 1 cut(s) 558
BsmFI GGGAC 1 cut(s) 350
BsnI GGCC 4 cut(s) 139, 278, 299, 320
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 6 cut(s) 25, 145, 202, 407, 568, 594
Bsp19I CCATGG 1 cut(s) 387
BspANI GGCC 4 cut(s) 139, 278, 299, 320
BspCNI CTCAG 1 cut(s) 526
BspHI TCATGA 1 cut(s) 571
BspLI GGNNCC 2 cut(s) 204, 384
BspPI GGATC 4 cut(s) 140, 197, 210, 402
BsrI ACTGG 1 cut(s) 338
BssECI CCNNGG 2 cut(s) 156, 387
BssMI GATC 6 cut(s) 25, 145, 202, 407, 568, 594
BssT1I CCWWGG 2 cut(s) 156, 387
Bst4CI ACNGT 1 cut(s) 222
Bst6I CTCTTC 1 cut(s) 235
BstC8I GCNNGC 3 cut(s) 71, 280, 470
BstDEI CTNAG 1 cut(s) 534
BstDSI CCRYGG 1 cut(s) 387
BstF5I GGATG 3 cut(s) 124, 182, 254
BstKTI GATC 6 cut(s) 28, 148, 205, 410, 571, 597
BstMAI GTCTC 1 cut(s) 558
BstMBI GATC 6 cut(s) 25, 145, 202, 407, 568, 594
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 212
BstSFI CTRYAG 1 cut(s) 31
BstV1I GCAGC 3 cut(s) 78, 388, 526
BstX2I RGATCY 2 cut(s) 202, 407
BstYI RGATCY 2 cut(s) 202, 407
BsuRI GGCC 4 cut(s) 139, 278, 299, 320
BtgI CCRYGG 1 cut(s) 387
BtsCI GGATG 3 cut(s) 124, 182, 254
Cac8I GCNNGC 3 cut(s) 71, 280, 470
CciI TCATGA 1 cut(s) 571
Cfr13I GGNCC 1 cut(s) 297
CviAII CATG 4 cut(s) 199, 355, 388, 572
DdeI CTNAG 1 cut(s) 534
DpnI GATC 6 cut(s) 27, 147, 204, 409, 570, 596
DpnII GATC 6 cut(s) 25, 145, 202, 407, 568, 594
DraI TTTAAA 1 cut(s) 520
Eam1104I CTCTTC 1 cut(s) 235
EarI CTCTTC 1 cut(s) 235
Eco130I CCWWGG 2 cut(s) 156, 387
Eco147I AGGCCT 1 cut(s) 278
EcoO109I RGGNCCY 1 cut(s) 297
EcoT14I CCWWGG 2 cut(s) 156, 387
ErhI CCWWGG 2 cut(s) 156, 387
Esp3I CGTCTC 1 cut(s) 558
FaeI CATG 4 cut(s) 202, 358, 391, 575
FaiI YATR 9 cut(s) 33, 100, 189, 200, 236, 356, 360, 389, 573
FaqI GGGAC 1 cut(s) 350
FatI CATG 4 cut(s) 198, 354, 387, 571
Fnu4HI GCNGC 3 cut(s) 67, 402, 540
FokI GGATG 3 cut(s) 111, 169, 241
Fsp4HI GCNGC 3 cut(s) 67, 402, 540
FspBI CTAG 1 cut(s) 242
GluI GCNGC 3 cut(s) 67, 402, 540
HaeIII GGCC 4 cut(s) 139, 278, 299, 320
HapII CCGG 2 cut(s) 214, 398
Hin1II CATG 4 cut(s) 202, 358, 391, 575
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 3 cut(s) 227, 479, 554
HpaII CCGG 2 cut(s) 214, 398
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 2 cut(s) 47, 487
Hpy188I TCNGA 2 cut(s) 304, 535
Hpy188III TCNNGA 3 cut(s) 128, 551, 572
Hpy8I GTNNAC 2 cut(s) 47, 487
Hpy99I CGWCG 2 cut(s) 344, 347
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4V TGCA 3 cut(s) 118, 124, 282
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 534
Hsp92II CATG 4 cut(s) 202, 358, 391, 575
Kzo9I GATC 6 cut(s) 25, 145, 202, 407, 568, 594
LmnI GCTCC 1 cut(s) 388
LpnPI CCDG 8 cut(s) 39, 141, 227, 279, 292, 319, 411, 415
Lsp1109I GCAGC 3 cut(s) 78, 388, 526
LweI GCATC 1 cut(s) 133
MaeI CTAG 1 cut(s) 242
MalI GATC 6 cut(s) 27, 147, 204, 409, 570, 596
MboI GATC 6 cut(s) 25, 145, 202, 407, 568, 594
MboII GAAGA 4 cut(s) 19, 22, 222, 587
MflI RGATCY 2 cut(s) 202, 407
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 1 cut(s) 462
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 8 cut(s) 52, 129, 270, 310, 331, 529, 541, 577
MseI TTAA 2 cut(s) 75, 519
MspI CCGG 2 cut(s) 214, 398
MspR9I CCNGG 1 cut(s) 214
MwoI GCNNNNNNNGC 1 cut(s) 104
NciI CCSGG 1 cut(s) 214
NcoI CCATGG 1 cut(s) 387
NdeII GATC 6 cut(s) 25, 145, 202, 407, 568, 594
NlaIII CATG 4 cut(s) 202, 358, 391, 575
NlaIV GGNNCC 2 cut(s) 204, 384
PagI TCATGA 1 cut(s) 571
PceI AGGCCT 1 cut(s) 278
PfeI GAWTC 2 cut(s) 479, 554
PkrI GCNGC 3 cut(s) 68, 403, 541
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
PspN4I GGNNCC 2 cut(s) 204, 384
PspPI GGNCC 1 cut(s) 297
PsuI RGATCY 2 cut(s) 202, 407
SaqAI TTAA 2 cut(s) 75, 519
SatI GCNGC 3 cut(s) 67, 402, 540
Sau3AI GATC 6 cut(s) 25, 145, 202, 407, 568, 594
Sau96I GGNCC 1 cut(s) 297
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 214
SduI GDGCHC 1 cut(s) 354
SetI ASST 5 cut(s) 75, 162, 177, 419, 434
SfaNI GCATC 1 cut(s) 133
SfcI CTRYAG 1 cut(s) 31
Sse9I AATT 1 cut(s) 462
SseBI AGGCCT 1 cut(s) 278
SspMI CTAG 1 cut(s) 242
StuI AGGCCT 1 cut(s) 278
StyD4I CCNGG 1 cut(s) 212
StyI CCWWGG 2 cut(s) 156, 387
TaaI ACNGT 1 cut(s) 222
TaqI TCGA 2 cut(s) 491, 502
TasI AATT 1 cut(s) 462
TfiI GAWTC 2 cut(s) 479, 554
Tru1I TTAA 2 cut(s) 75, 519
Tru9I TTAA 2 cut(s) 75, 519
TseI GCWGC 3 cut(s) 66, 401, 539
TspDTI ATGAA 2 cut(s) 474, 588
XapI RAATTY 1 cut(s) 462
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.