Rroxscaffold_1G00064060

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005897
Physical Location & Seq
Forward (+)
85906612 .. 85907421
810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00064060.1

Sequence Viewer

Length: 267 bp
ATGGAAGGTTATAAAGTTACACCTGCTACCTCAAATATGGGGAAGAAAGTGGTCGTAGATCACTATCAGGTTCTTGGTTTATCGTCTGGTGAGGAAGGGGCCAAGCTTGAGGACAAAGAGATCACAAAGCCGTACAGAGCAAAGGCTTTGGAGTTGCATCCAGACAAGAGACCAAACGATCCCAATGCGAATGTCGAGTTCCAAAGGCTCAACGCATCTTATGAGATAATGATCCAAATGCCCGGAAACAGTTCGACTCTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

88

Amino Acids

9.79

Weight (kDa)

6.08

Isoelectric Point (pI)

24.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 20 - 77 1.1e-13 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 12
AarI CACCTGC 1 cut(s) 31
Acc36I ACCTGC 1 cut(s) 31
AclWI GGATC 2 cut(s) 173, 226
AfaI GTAC 1 cut(s) 134
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
Alw26I GTCTC 1 cut(s) 163
AlwI GGATC 2 cut(s) 173, 226
AoxI GGCC 1 cut(s) 99
Asp700I GAANNNNTTC 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 99
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 1 cut(s) 101
BceAI ACGGC 1 cut(s) 115
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BcnI CCSGG 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 163
BfuAI ACCTGC 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 2 cut(s) 166, 224
BpuEI CTTGAG 1 cut(s) 128
BpuMI CCSGG 1 cut(s) 243
BsaBI GATNNNNATC 2 cut(s) 63, 230
BsaI GGTCTC 1 cut(s) 163
Bse8I GATNNNNATC 2 cut(s) 63, 230
BseGI GGATG 1 cut(s) 157
BseJI GATNNNNATC 2 cut(s) 63, 230
BshFI GGCC 1 cut(s) 101
BsiSI CCGG 1 cut(s) 243
BsmAI GTCTC 1 cut(s) 163
BsnI GGCC 1 cut(s) 101
Bso31I GGTCTC 1 cut(s) 163
Bsp143I GATC 4 cut(s) 58, 120, 178, 231
BspANI GGCC 1 cut(s) 101
BspLI GGNNCC 1 cut(s) 100
BspMI ACCTGC 1 cut(s) 31
BspPI GGATC 2 cut(s) 173, 226
BspTNI GGTCTC 1 cut(s) 163
BssMI GATC 4 cut(s) 58, 120, 178, 231
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 264
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 4 cut(s) 61, 123, 181, 234
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 4 cut(s) 58, 120, 178, 231
BstSCI CCNGG 1 cut(s) 241
BsuRI GGCC 1 cut(s) 101
BtsCI GGATG 1 cut(s) 157
BveI ACCTGC 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 133
CviJI RGCY 5 cut(s) 101, 106, 130, 146, 208
CviKI_1 RGCY 5 cut(s) 101, 106, 130, 146, 208
CviQI GTAC 1 cut(s) 133
DpnI GATC 4 cut(s) 60, 122, 180, 233
DpnII GATC 4 cut(s) 58, 120, 178, 231
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco31I GGTCTC 1 cut(s) 163
FaiI YATR 3 cut(s) 12, 38, 222
FokI GGATG 1 cut(s) 144
HaeIII GGCC 1 cut(s) 101
HapII CCGG 1 cut(s) 243
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 1 cut(s) 256
HpaII CCGG 1 cut(s) 243
HphI GGTGA 1 cut(s) 101
Hpy188I TCNGA 1 cut(s) 266
Hpy188III TCNNGA 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 89
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4V TGCA 1 cut(s) 157
Kzo9I GATC 4 cut(s) 58, 120, 178, 231
LpnPI CCDG 5 cut(s) 36, 53, 72, 174, 256
LweI GCATC 2 cut(s) 166, 224
MaeIII GTNAC 1 cut(s) 16
MalI GATC 4 cut(s) 60, 122, 180, 233
MboI GATC 4 cut(s) 58, 120, 178, 231
MboII GAAGA 2 cut(s) 55, 251
MlyI GAGTC 1 cut(s) 250
MnlI CCTC 3 cut(s) 40, 85, 103
MroXI GAANNNNTTC 1 cut(s) 250
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 1 cut(s) 243
NciI CCSGG 1 cut(s) 243
NdeII GATC 4 cut(s) 58, 120, 178, 231
NlaIV GGNNCC 1 cut(s) 100
PaqCI CACCTGC 1 cut(s) 31
PdmI GAANNNNTTC 1 cut(s) 250
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PsiI TTATAA 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 1 cut(s) 99
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
Sau3AI GATC 4 cut(s) 58, 120, 178, 231
Sau96I GGNCC 1 cut(s) 99
SchI GAGTC 1 cut(s) 250
ScrFI CCNGG 1 cut(s) 243
SetI ASST 5 cut(s) 10, 25, 32, 72, 108
SfaNI GCATC 2 cut(s) 166, 224
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 241
TaaI ACNGT 1 cut(s) 251
TaqI TCGA 2 cut(s) 195, 254
XmnI GAANNNNTTC 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.