Rorug06G0097300

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005897
Physical Location & Seq
Reverse (-)
13025901 .. 13040202
14302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0097300.1

Sequence Viewer

Length: 516 bp
ATGGCTTCCACGTTTGCACAAGCCATTTTTGCAATGCTGCTAATTGCTTCAATGGTGGCACTTGGCACAGCCAACAAGGATTGGCAGCAGCGGAACTACACTGGCTGGGGTTTCAACCATGGTCCATATCACCTCAACAAGACAGAAGGACCCAACAAGATCATTGTTGGTGGCTCCGAAAACTGGCATTATGGTTTTAACTATGCAGATTGGTCTCTGAAAAATGCCTCATTTTACGTCCAAGACACTCTGGTTTTCAAGTATGATCCGCCAAACAACACCACACCTCCTCACAGCGTGTACATGCTACCAAACCTTTGGAGCTTCATACACTGCGACTTAAGCAAGGCCAAGATGGTGGGAAGTCCAACACAAGGAGGTGGAAACGGCTTTGAGTTTGTGCTCAAGAGCTCGCGGCCTTACTACTTTGCTTGTGGCGAGCACAATGGTACACATTGTAAAGACGGAATGATGAGGTTCTTCGTGTTCCCAAAGCTTCGCGGCTGGCATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

171

Amino Acids

19.44

Weight (kDa)

8.94

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 415, 501
AciI CCGC 4 cut(s) 91, 269, 415, 501
AclWI GGATC 1 cut(s) 260
AdeI CACNNNGTG 1 cut(s) 298
AfaI GTAC 2 cut(s) 302, 451
AfiI CCNNNNNNNGG 2 cut(s) 183, 374
AflII CTTAAG 1 cut(s) 340
AgsI TTSAA 3 cut(s) 51, 115, 259
AluBI AGCT 3 cut(s) 324, 411, 496
AluI AGCT 3 cut(s) 324, 411, 496
Alw21I GWGCWC 3 cut(s) 405, 413, 444
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 1 cut(s) 260
AoxI GGCC 2 cut(s) 348, 416
ApeKI GCWGC 3 cut(s) 37, 85, 88
AspS9I GGNCC 2 cut(s) 122, 149
AsuHPI GGTGA 1 cut(s) 122
AvaII GGWCC 2 cut(s) 122, 149
BanII GRGCYC 1 cut(s) 413
Bbv12I GWGCWC 3 cut(s) 405, 413, 444
BbvI GCAGC 3 cut(s) 24, 97, 100
BccI CCATC 1 cut(s) 349
BceAI ACGGC 1 cut(s) 403
BcoDI GTCTC 1 cut(s) 219
BfrI CTTAAG 1 cut(s) 340
BisI GCNGC 5 cut(s) 38, 86, 89, 416, 502
BlsI GCNGC 5 cut(s) 39, 87, 90, 417, 503
Bme18I GGWCC 2 cut(s) 122, 149
BmgT120I GGNCC 2 cut(s) 122, 149
BmiI GGNNCC 2 cut(s) 151, 175
BpuEI CTTGAG 1 cut(s) 389
BsaI GGTCTC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 374
Bse1I ACTGG 2 cut(s) 106, 188
Bse3DI GCAATG 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 118
BseLI CCNNNNNNNGG 2 cut(s) 183, 374
BseMI GCAATG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 106, 188
BseRI GAGGAG 1 cut(s) 279
BseXI GCAGC 3 cut(s) 24, 97, 100
BseYI CCCAGC 1 cut(s) 105
Bsh1236I CGCG 2 cut(s) 415, 501
BshFI GGCC 2 cut(s) 350, 418
BsiHKAI GWGCWC 3 cut(s) 405, 413, 444
BslI CCNNNNNNNGG 2 cut(s) 183, 374
BsmAI GTCTC 1 cut(s) 219
BsnI GGCC 2 cut(s) 350, 418
Bso31I GGTCTC 1 cut(s) 219
Bsp1286I GDGCHC 3 cut(s) 405, 413, 444
Bsp1407I TGTACA 1 cut(s) 300
Bsp143I GATC 2 cut(s) 159, 265
Bsp19I CCATGG 1 cut(s) 118
BspACI CCGC 4 cut(s) 91, 269, 415, 501
BspANI GGCC 2 cut(s) 350, 418
BspFNI CGCG 2 cut(s) 415, 501
BspLI GGNNCC 2 cut(s) 151, 175
BspPI GGATC 1 cut(s) 260
BspTI CTTAAG 1 cut(s) 340
BspTNI GGTCTC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 39
BsrGI TGTACA 1 cut(s) 300
BsrI ACTGG 2 cut(s) 106, 188
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 2 cut(s) 159, 265
BssT1I CCWWGG 1 cut(s) 118
BstAFI CTTAAG 1 cut(s) 340
BstAUI TGTACA 1 cut(s) 300
BstC8I GCNNGC 3 cut(s) 413, 440, 506
BstDSI CCRYGG 1 cut(s) 118
BstFNI CGCG 2 cut(s) 415, 501
BstKTI GATC 2 cut(s) 162, 268
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 2 cut(s) 159, 265
BstMWI GCNNNNNNNGC 2 cut(s) 29, 342
BstNSI RCATGY 1 cut(s) 307
BstUI CGCG 2 cut(s) 415, 501
BstV1I GCAGC 3 cut(s) 24, 97, 100
BstXI CCANNNNNNTGG 2 cut(s) 318, 358
BsuRI GGCC 2 cut(s) 350, 418
BtgI CCRYGG 1 cut(s) 118
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 2 cut(s) 99, 331
Cac8I GCNNGC 3 cut(s) 413, 440, 506
Cfr13I GGNCC 2 cut(s) 122, 149
Csp6I GTAC 2 cut(s) 301, 450
CviAII CATG 2 cut(s) 119, 304
CviQI GTAC 2 cut(s) 301, 450
DpnI GATC 2 cut(s) 161, 267
DpnII GATC 2 cut(s) 159, 265
DraIII CACNNNGTG 1 cut(s) 298
EciI GGCGGA 1 cut(s) 258
Ecl136II GAGCTC 1 cut(s) 411
Eco130I CCWWGG 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 413
Eco31I GGTCTC 1 cut(s) 219
Eco47I GGWCC 2 cut(s) 122, 149
Eco53kI GAGCTC 1 cut(s) 411
EcoICRI GAGCTC 1 cut(s) 411
EcoO109I RGGNCCY 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 413
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 2 cut(s) 122, 307
FaiI YATR 7 cut(s) 120, 127, 192, 204, 264, 305, 329
FatI CATG 2 cut(s) 118, 303
Fnu4HI GCNGC 5 cut(s) 38, 86, 89, 416, 502
FriOI GRGCYC 1 cut(s) 413
Fsp4HI GCNGC 5 cut(s) 38, 86, 89, 416, 502
GluI GCNGC 5 cut(s) 38, 86, 89, 416, 502
GsaI CCCAGC 1 cut(s) 109
HaeIII GGCC 2 cut(s) 350, 418
Hin1II CATG 2 cut(s) 122, 307
HindIII AAGCTT 1 cut(s) 494
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 2 cut(s) 301, 452
Hpy188I TCNGA 2 cut(s) 178, 219
Hpy188III TCNNGA 1 cut(s) 406
Hpy8I GTNNAC 2 cut(s) 301, 452
HpyAV CCTTC 1 cut(s) 140
HpyCH4IV ACGT 2 cut(s) 11, 237
HpyCH4V TGCA 3 cut(s) 17, 32, 206
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 342
HpySE526I ACGT 2 cut(s) 11, 237
Hsp92II CATG 2 cut(s) 122, 307
Kzo9I GATC 2 cut(s) 159, 265
LmnI GCTCC 2 cut(s) 179, 321
LpnPI CCDG 5 cut(s) 87, 91, 169, 236, 490
Lsp1109I GCAGC 3 cut(s) 24, 97, 100
MaeII ACGT 2 cut(s) 11, 237
MalI GATC 2 cut(s) 161, 267
MboI GATC 2 cut(s) 159, 265
MboII GAAGA 1 cut(s) 472
MhlI GDGCHC 3 cut(s) 405, 413, 444
MluCI AATT 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 6 cut(s) 143, 238, 297, 300, 371, 468
MseI TTAA 2 cut(s) 198, 341
MspA1I CMGCKG 1 cut(s) 91
MspCI CTTAAG 1 cut(s) 340
MvnI CGCG 2 cut(s) 415, 501
MwoI GCNNNNNNNGC 2 cut(s) 29, 342
NcoI CCATGG 1 cut(s) 118
NdeII GATC 2 cut(s) 159, 265
NlaIII CATG 2 cut(s) 122, 307
NlaIV GGNNCC 2 cut(s) 151, 175
NspI RCATGY 1 cut(s) 307
PkrI GCNGC 5 cut(s) 39, 87, 90, 417, 503
PpuMI RGGWCCY 1 cut(s) 149
Psp124BI GAGCTC 1 cut(s) 413
Psp5II RGGWCCY 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 151, 175
PspPI GGNCC 2 cut(s) 122, 149
PspPPI RGGWCCY 1 cut(s) 149
RsaI GTAC 2 cut(s) 302, 451
RsaNI GTAC 2 cut(s) 301, 450
SacI GAGCTC 1 cut(s) 413
SaqAI TTAA 2 cut(s) 198, 341
SatI GCNGC 5 cut(s) 38, 86, 89, 416, 502
Sau3AI GATC 2 cut(s) 159, 265
Sau96I GGNCC 2 cut(s) 122, 149
SduI GDGCHC 3 cut(s) 405, 413, 444
SinI GGWCC 2 cut(s) 122, 149
SmlI CTYRAG 2 cut(s) 340, 404
SmoI CTYRAG 2 cut(s) 340, 404
Sse9I AATT 1 cut(s) 42
SsiI CCGC 4 cut(s) 91, 269, 415, 501
SstI GAGCTC 1 cut(s) 413
StyI CCWWGG 1 cut(s) 118
TaiI ACGT 2 cut(s) 14, 240
TasI AATT 1 cut(s) 42
TatI WGTACW 1 cut(s) 300
TauI GCSGC 2 cut(s) 418, 504
Tru1I TTAA 2 cut(s) 198, 341
Tru9I TTAA 2 cut(s) 198, 341
TscAI CASTG 2 cut(s) 106, 338
TseI GCWGC 3 cut(s) 37, 85, 88
TspDTI ATGAA 1 cut(s) 316
TspGWI ACGGA 1 cut(s) 480
TspRI CASTG 2 cut(s) 106, 338
Vha464I CTTAAG 1 cut(s) 340
VpaK11BI GGWCC 2 cut(s) 122, 149
XceI RCATGY 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.