Rh5BG093200

DnaJ homolog, subfamily C, member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0005897
Physical Location & Seq
Reverse (-)
8326235 .. 8326738
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG093200.1

Sequence Viewer

Length: 504 bp
ATGGAGAAGGAGAAGAATAAAGTGGTCATAGATCATTATAGGGTTCTTGGTTTACCGTCGGGTAAGGAAGTCACCAAGCTTAACGAGAAAGAGATTACAAAGGCGTACAGAGCAAAGGCTTTGCAGTTGCATCCAGACAAAAGACCAAACGATCTCGATGCCAATGCCAAGTTTCAAAGGCTCAACTCATCCTATGCGATACTCAGCAATCCAAAAGCCCGGAAACAGTTCGACTCTTCTCTGAGACCCGAGAACAAGTCCTCGGAACCACTACCAACCTCTGAACCACCACCAAGTAAGAATGAGGATCTTGACCAGGGTTACTTGTTTGTGGTTGGTTTGTTAATCTTTGTTTTAGCCCCCATCGTTTTTCCGGAATCGAGATCCAGAAGCAGTACGTCGAATAGATTAGGTTCTTATATAGAAGGGTTCTTTAGATTACCCAAACGTGAACGATTGGATCTCTGGTCGGGGATGGTTCGACTAGCTAGGTCAATATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

167

Amino Acids

19.07

Weight (kDa)

9.82

Isoelectric Point (pI)

62.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 11 - 78 5.4e-18 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 373
AclWI GGATC 3 cut(s) 315, 378, 468
AfaI GTAC 2 cut(s) 107, 397
AgsI TTSAA 1 cut(s) 176
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 2 cut(s) 79, 488
AluI AGCT 2 cut(s) 79, 488
Alw26I GTCTC 1 cut(s) 238
AlwI GGATC 3 cut(s) 315, 378, 468
Ama87I CYCGRG 1 cut(s) 248
Aor13HI TCCGGA 1 cut(s) 373
Asp700I GAANNNNTTC 1 cut(s) 227
AsuC2I CCSGG 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 64
AvaI CYCGRG 1 cut(s) 248
BccI CCATC 2 cut(s) 371, 469
BcgI CGANNNNNNTGC 4 cut(s) 140, 146, 174, 180
BciT130I CCWGG 1 cut(s) 317
BcnI CCSGG 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 238
BfaI CTAG 2 cut(s) 485, 489
Bme1390I CCNGG 2 cut(s) 220, 317
BmeT110I CYCGRG 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 2 cut(s) 220, 317
BmsI GCATC 2 cut(s) 139, 148
BpuMI CCSGG 1 cut(s) 220
BsaI GGTCTC 1 cut(s) 238
BsaJI CCNNGG 2 cut(s) 261, 316
BsaWI WCCGGW 1 cut(s) 373
BseAI TCCGGA 1 cut(s) 373
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 2 cut(s) 261, 316
BseGI GGATG 3 cut(s) 130, 188, 480
BseMII CTCAG 2 cut(s) 217, 233
BsiHKCI CYCGRG 1 cut(s) 248
BsiSI CCGG 2 cut(s) 220, 374
BsmAI GTCTC 1 cut(s) 238
Bso31I GGTCTC 1 cut(s) 238
BsoBI CYCGRG 1 cut(s) 248
Bsp13I TCCGGA 1 cut(s) 373
Bsp143I GATC 5 cut(s) 31, 151, 307, 383, 460
BspCNI CTCAG 2 cut(s) 216, 234
BspEI TCCGGA 1 cut(s) 373
BspLI GGNNCC 1 cut(s) 267
BspPI GGATC 3 cut(s) 315, 378, 468
BspTNI GGTCTC 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 261, 316
BssMI GATC 5 cut(s) 31, 151, 307, 383, 460
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 2 cut(s) 57, 228
Bst6I CTCTTC 1 cut(s) 241
BstDEI CTNAG 2 cut(s) 203, 242
BstF5I GGATG 3 cut(s) 130, 188, 480
BstKTI GATC 5 cut(s) 34, 154, 310, 386, 463
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 5 cut(s) 31, 151, 307, 383, 460
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 317
BstSCI CCNGG 2 cut(s) 218, 315
BstX2I RGATCY 3 cut(s) 307, 383, 460
BstYI RGATCY 3 cut(s) 307, 383, 460
BtsCI GGATG 3 cut(s) 130, 188, 480
Csp6I GTAC 2 cut(s) 106, 396
CviJI RGCY 6 cut(s) 79, 119, 181, 218, 359, 488
CviKI_1 RGCY 6 cut(s) 79, 119, 181, 218, 359, 488
CviQI GTAC 2 cut(s) 106, 396
DdeI CTNAG 2 cut(s) 203, 242
DpnI GATC 5 cut(s) 33, 153, 309, 385, 462
DpnII GATC 5 cut(s) 31, 151, 307, 383, 460
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
Eco31I GGTCTC 1 cut(s) 238
Eco88I CYCGRG 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 315
FaiI YATR 5 cut(s) 29, 39, 195, 420, 422
FokI GGATG 3 cut(s) 117, 175, 487
FspBI CTAG 2 cut(s) 485, 489
HapII CCGG 2 cut(s) 220, 374
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 2 cut(s) 233, 377
HpaII CCGG 2 cut(s) 220, 374
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 2 cut(s) 53, 452
Hpy188I TCNGA 3 cut(s) 243, 265, 283
Hpy188III TCNNGA 6 cut(s) 134, 155, 311, 374, 381, 387
Hpy8I GTNNAC 2 cut(s) 53, 452
Hpy99I CGWCG 2 cut(s) 61, 403
HpyAV CCTTC 1 cut(s) 419
HpyCH4III ACNGT 2 cut(s) 57, 228
HpyCH4IV ACGT 2 cut(s) 398, 448
HpyCH4V TGCA 2 cut(s) 124, 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 2 cut(s) 203, 242
HpySE526I ACGT 2 cut(s) 398, 448
Kpn2I TCCGGA 1 cut(s) 373
Kzo9I GATC 5 cut(s) 31, 151, 307, 383, 460
LpnPI CCDG 7 cut(s) 147, 233, 302, 329, 387, 400, 451
LweI GCATC 2 cut(s) 139, 148
MaeI CTAG 2 cut(s) 485, 489
MaeII ACGT 2 cut(s) 398, 448
MaeIII GTNAC 2 cut(s) 70, 320
MalI GATC 5 cut(s) 33, 153, 309, 385, 462
MboI GATC 5 cut(s) 31, 151, 307, 383, 460
MboII GAAGA 2 cut(s) 25, 228
MflI RGATCY 3 cut(s) 307, 383, 460
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 3 cut(s) 271, 289, 298
MroI TCCGGA 1 cut(s) 373
MroXI GAANNNNTTC 1 cut(s) 227
MseI TTAA 3 cut(s) 81, 344, 502
MspI CCGG 2 cut(s) 220, 374
MspR9I CCNGG 2 cut(s) 220, 317
MvaI CCWGG 1 cut(s) 317
MwoI GCNNNNNNNGC 1 cut(s) 110
NciI CCSGG 1 cut(s) 220
NdeII GATC 5 cut(s) 31, 151, 307, 383, 460
NlaIV GGNNCC 1 cut(s) 267
NmuCI GTSAC 1 cut(s) 70
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 1 cut(s) 377
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 1 cut(s) 267
PsuI RGATCY 3 cut(s) 307, 383, 460
RsaI GTAC 2 cut(s) 107, 397
RsaNI GTAC 2 cut(s) 106, 396
SaqAI TTAA 3 cut(s) 81, 344, 502
Sau3AI GATC 5 cut(s) 31, 151, 307, 383, 460
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 2 cut(s) 220, 317
SetI ASST 7 cut(s) 81, 281, 401, 415, 451, 490, 494
SfaNI GCATC 2 cut(s) 139, 148
SspI AATATT 1 cut(s) 498
SspMI CTAG 2 cut(s) 485, 489
StyD4I CCNGG 2 cut(s) 218, 315
TaaI ACNGT 2 cut(s) 57, 228
TaiI ACGT 2 cut(s) 401, 451
TaqI TCGA 5 cut(s) 156, 231, 380, 401, 481
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 3 cut(s) 81, 344, 502
Tru9I TTAA 3 cut(s) 81, 344, 502
TseFI GTSAC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 70
XmnI GAANNNNTTC 1 cut(s) 227
XspI CTAG 2 cut(s) 485, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.