Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004525

Physical Location & Seq

Genomic Coordinates Reverse (-)

6891755 .. 6892289

Gene Structure 535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g07990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGATGGAGGTGGTGAATCTGATAGCAATGGTGCCCTTGCCCTGTTTGTAAGGCTATTATTGTGCAAAGTAGACTGGTCCCTCTATGGAATAGGAGGATCCAATGGTTCAGATCCAAGGCTGTCTGTACCCAGTATTGAGATTCCAGATCGTCCATCTGCAATAAGGTTTACTGCTAGGCCTGCTTCAACTGCCCGTATCTGTGTGAAACTATTTTTTCGACTGTTAATAATGATGGGAAAACACCTTCTAAAGTTAAGGATAGAAAGTGCATCGAACAACTTGGCTGAATCTCTAAACGGGCGACTCCATGGATCAGTTGAGGCACCAGAGGTTAGACACAATACTGATGTAGAAGGAAGCAGCAATCACAGTGGATTGATGGAGGTAGCACAGGTCAGGGACAACAATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

14.86

Weight (kDa)

6.9

Isoelectric Point (pI)

27.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07990 FvH4_2g08010 FvH4_2g08010 FvH4_2g08010 FvH4_2g08010
malus_domestica	MD10G1082400.v1.1
prunus_persica	Prupe.8G105100_v2.0.a1 Prupe.8G105200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262471
rosa_laevigata	RLG00000014420 RLG00000014423
rosa_multiflora	Rmu_co8005002.1_g000001 Rmu_sc0000596.1_g000013 Rmu_sc0010432.1_g000001
rosa_roxburghii	Rroxscaffold_177G00434410 Rroxscaffold_177G00434440 Rroxscaffold_7G00205190 Rroxscaffold_7G00205230
rosa_rugosa	Rorug05G0597700 Rorug05G0597700 Rorug05G0597800 Rorug05G0597800 Rorug05G0597800 Rorug05G0597800 Rorug05G0597900
rosa_samantha	Rh6AG119000 Rh6BG113000 Rh6CG110700 Rh6CG111300 Rh6DG101000
rosa_wichuraiana	Rw6G010280 Rw6G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	32, 325
AccI	GTMKAC	1 cut(s)	72
AclWI	GGATC	4 cut(s)	93, 106, 107, 322
AfaI	GTAC	1 cut(s)	129
AgsI	TTSAA	1 cut(s)	189
AlwI	GGATC	4 cut(s)	93, 106, 107, 322
AoxI	GGCC	1 cut(s)	179
ApeKI	GCWGC	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	78
AsuHPI	GGTGA	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	37
BamHI	GGATCC	1 cut(s)	98
BanI	GGYRCC	2 cut(s)	32, 325
BbvI	GCAGC	1 cut(s)	375
BccI	CCATC	3 cut(s)	163, 229, 376
BfaI	CTAG	1 cut(s)	177
BisI	GCNGC	1 cut(s)	364
BlsI	GCNGC	1 cut(s)	365
Bme18I	GGWCC	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	4 cut(s)	34, 80, 100, 327
BmrI	ACTGGG	1 cut(s)	126
BmsI	GCATC	1 cut(s)	281
BmuI	ACTGGG	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	116, 310
Bse1I	ACTGG	2 cut(s)	80, 132
Bse3DI	GCAATG	1 cut(s)	34
BseDI	CCNNGG	2 cut(s)	116, 310
BseGI	GGATG	1 cut(s)	10
BseMI	GCAATG	1 cut(s)	34
BseNI	ACTGG	2 cut(s)	80, 132
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	375
BshFI	GGCC	1 cut(s)	181
BshNI	GGYRCC	2 cut(s)	32, 325
BslFI	GGGAC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	64
BsnI	GGCC	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	4 cut(s)	98, 112, 148, 314
Bsp19I	CCATGG	1 cut(s)	310
BspANI	GGCC	1 cut(s)	181
BspLI	GGNNCC	4 cut(s)	34, 80, 100, 327
BspPI	GGATC	4 cut(s)	93, 106, 107, 322
BspT107I	GGYRCC	2 cut(s)	32, 325
BsrDI	GCAATG	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	80, 132
BssECI	CCNNGG	2 cut(s)	116, 310
BssMI	GATC	4 cut(s)	98, 112, 148, 314
BssT1I	CCWWGG	2 cut(s)	116, 310
Bst4CI	ACNGT	2 cut(s)	225, 374
BstC8I	GCNNGC	1 cut(s)	183
BstDSI	CCRYGG	1 cut(s)	310
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	4 cut(s)	101, 115, 151, 317
BstMBI	GATC	4 cut(s)	98, 112, 148, 314
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 191
BstSLI	GKGCMC	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	375
BstX2I	RGATCY	2 cut(s)	98, 112
BstYI	RGATCY	2 cut(s)	98, 112
BsuRI	GGCC	1 cut(s)	181
BtgI	CCRYGG	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	379
Cac8I	GCNNGC	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	128
CspCI	CAANNNNNGTGG	2 cut(s)	355, 390
CviAII	CATG	1 cut(s)	311
CviJI	RGCY	4 cut(s)	55, 121, 181, 287
CviKI_1	RGCY	4 cut(s)	55, 121, 181, 287
CviQI	GTAC	1 cut(s)	128
DpnI	GATC	4 cut(s)	100, 114, 150, 316
DpnII	GATC	4 cut(s)	98, 112, 148, 314
Eco130I	CCWWGG	2 cut(s)	116, 310
Eco147I	AGGCCT	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	78
EcoT14I	CCWWGG	2 cut(s)	116, 310
ErhI	CCWWGG	2 cut(s)	116, 310
FaeI	CATG	1 cut(s)	314
FaiI	YATR	2 cut(s)	87, 312
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	1 cut(s)	310
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	1 cut(s)	364
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	364
FspBI	CTAG	1 cut(s)	177
GluI	GCNGC	1 cut(s)	364
HaeIII	GGCC	1 cut(s)	181
Hin1II	CATG	1 cut(s)	314
HinfI	GANTC	4 cut(s)	17, 142, 290, 306
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	2 cut(s)	73, 171
Hpy188I	TCNGA	2 cut(s)	22, 112
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	2 cut(s)	73, 171
HpyAV	CCTTC	2 cut(s)	257, 350
HpyCH4III	ACNGT	2 cut(s)	225, 374
HpyCH4V	TGCA	3 cut(s)	66, 161, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 191
Hsp92II	CATG	1 cut(s)	314
Kzo9I	GATC	4 cut(s)	98, 112, 148, 314
LpnPI	CCDG	8 cut(s)	56, 61, 145, 159, 195, 342, 380, 385
Lsp1109I	GCAGC	1 cut(s)	375
LweI	GCATC	1 cut(s)	281
MaeI	CTAG	1 cut(s)	177
MalI	GATC	4 cut(s)	100, 114, 150, 316
MboI	GATC	4 cut(s)	98, 112, 148, 314
MflI	RGATCY	2 cut(s)	98, 112
MhlI	GDGCHC	1 cut(s)	37
MlyI	GAGTC	1 cut(s)	300
MnlI	CCTC	5 cut(s)	89, 92, 316, 325, 379
MseI	TTAA	2 cut(s)	227, 257
MwoI	GCNNNNNNNGC	2 cut(s)	182, 191
NcoI	CCATGG	1 cut(s)	310
NdeII	GATC	4 cut(s)	98, 112, 148, 314
NlaIII	CATG	1 cut(s)	314
NlaIV	GGNNCC	4 cut(s)	34, 80, 100, 327
PceI	AGGCCT	1 cut(s)	181
PfeI	GAWTC	3 cut(s)	17, 142, 290
PkrI	GCNGC	1 cut(s)	365
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
PspN4I	GGNNCC	4 cut(s)	34, 80, 100, 327
PspPI	GGNCC	1 cut(s)	78
PsuI	RGATCY	2 cut(s)	98, 112
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	227, 257
SatI	GCNGC	1 cut(s)	364
Sau3AI	GATC	4 cut(s)	98, 112, 148, 314
Sau96I	GGNCC	1 cut(s)	78
SchI	GAGTC	1 cut(s)	300
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	6 cut(s)	13, 170, 249, 336, 390, 399
SfaNI	GCATC	1 cut(s)	281
SinI	GGWCC	1 cut(s)	78
SseBI	AGGCCT	1 cut(s)	181
SspMI	CTAG	1 cut(s)	177
StuI	AGGCCT	1 cut(s)	181
StyI	CCWWGG	2 cut(s)	116, 310
TaaI	ACNGT	2 cut(s)	225, 374
TaqI	TCGA	2 cut(s)	220, 275
TfiI	GAWTC	3 cut(s)	17, 142, 290
Tru1I	TTAA	2 cut(s)	227, 257
Tru9I	TTAA	2 cut(s)	227, 257
TscAI	CASTG	1 cut(s)	379
TseI	GCWGC	1 cut(s)	363
TspRI	CASTG	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	78
XmiI	GTMKAC	1 cut(s)	72
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.