RchiOBHm_Chr6g0262471

ER-associated misfolded protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004525
Physical Location & Seq
Reverse (-)
17224261 .. 17226352
2092 bp
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UTR
Exon/CDS
Intron
PRQ23538

Sequence Viewer

Length: 159 bp
ATGGATGGAGGTGATGAATCTAATAGCAATGGCTTTATTTGCAACATTTGCTATGAACCAGCTGAACAAGACCCAATAATGACACACTGCGGCCATCTTTACTGCTGGCCTTGTCTATATACATGGCTTCATCGCACACCACATGCTTCAAATAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

52

Amino Acids

5.99

Weight (kDa)

5.23

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_UBOX PF13445 14 - 43 1.1e-08 RING-type zinc-finger
zf-C3HC4 PF00097 14 - 45 4.6e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 14 - 40 2.3e-07 zinc-RING finger domain
zf-RING_2 PF13639 14 - 47 1.6e-06 Ring finger domain
zf-C3HC4_2 PF13923 14 - 46 5.5e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 90
AcoI YGGCCR 1 cut(s) 91
AgsI TTSAA 1 cut(s) 150
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
AoxI GGCC 2 cut(s) 91, 107
AsuHPI GGTGA 1 cut(s) 23
BccI CCATC 1 cut(s) 102
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
Bse3DI GCAATG 1 cut(s) 34
BseGI GGATG 1 cut(s) 10
BseMI GCAATG 1 cut(s) 34
BshFI GGCC 2 cut(s) 93, 109
BsnI GGCC 2 cut(s) 93, 109
BspACI CCGC 1 cut(s) 90
BspANI GGCC 2 cut(s) 93, 109
BsrDI GCAATG 1 cut(s) 34
BstAPI GCANNNNNTGC 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 107
BstF5I GGATG 1 cut(s) 10
BstMWI GCNNNNNNNGC 2 cut(s) 39, 48
BstNSI RCATGY 1 cut(s) 146
BsuRI GGCC 2 cut(s) 93, 109
BtgZI GCGATG 1 cut(s) 116
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 107
CviAII CATG 2 cut(s) 123, 143
CviJI RGCY 5 cut(s) 33, 62, 93, 109, 127
CviKI_1 RGCY 5 cut(s) 33, 62, 93, 109, 127
EaeI YGGCCR 1 cut(s) 91
FaeI CATG 2 cut(s) 126, 146
FaiI YATR 5 cut(s) 54, 118, 120, 124, 144
FatI CATG 2 cut(s) 122, 142
Fnu4HI GCNGC 1 cut(s) 91
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 91
HaeIII GGCC 2 cut(s) 93, 109
Hin1II CATG 2 cut(s) 126, 146
HinfI GANTC 1 cut(s) 17
HphI GGTGA 1 cut(s) 23
HpyCH4V TGCA 1 cut(s) 42
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 48
Hsp92II CATG 2 cut(s) 126, 146
LpnPI CCDG 2 cut(s) 72, 91
MspA1I CMGCKG 1 cut(s) 62
MwoI GCNNNNNNNGC 2 cut(s) 39, 48
NlaIII CATG 2 cut(s) 126, 146
NspI RCATGY 1 cut(s) 146
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 92
PvuII CAGCTG 1 cut(s) 62
SatI GCNGC 1 cut(s) 91
SetI ASST 3 cut(s) 13, 64, 158
SgeI CNNG 6 cut(s) 71, 80, 118, 123, 135, 155
SsiI CCGC 1 cut(s) 90
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 1 cut(s) 17
TscAI CASTG 1 cut(s) 92
TspDTI ATGAA 3 cut(s) 30, 69, 119
TspRI CASTG 1 cut(s) 92
XceI RCATGY 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.