Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000596.1

Orthogroup ID

OG0004525

Physical Location & Seq

Genomic Coordinates Reverse (-)

60285 .. 61055

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000596.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atggatgggggtgatggtggtagtggattcacctgcaacatttgctttgaatctgctgataaagatccaattgtaacaccttgtggccacctttactgcaagtcttgtatatatacatggcttcataacccaagacatgattccaagaggtgcccttgtcctgtatgcaatgctattataaaggagagcaaactgattcctctgtatggaataggaaaatcacaagatttaaatcaaaagtctcggcctatacctgtagccagtgttgagagcccagaaaggcaagctggtcaaaagtctgccactacttcagctccatataggccaactccttcagctccagagtggccgactggtccaagacctgccactccttcagctccagagtggccaactgatccaacacctactccttcggctcctgaatggccgactggtccaagacctgccacttcttcagtaccaaactgttcatctgatcaaacacttgccactccttcaactgccaatgtcattctgaaccaagtttgtaggctgttaatacgtgtgggacagtacatgctagtgaggataatagaagttgccacagataagctcattgaagctgtagaaagaaaaatcaatgagtcgagtgaggcagcagaagagaggaacgatgttaatgaagaaggaagtggaaataatactgtatcaagtgaggaggttgaagtgacggatagcaatggagaaggaagccatctgggaccctgggttgtgctcaacccaacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

256

Amino Acids

27.52

Weight (kDa)

5.01

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07990 FvH4_2g08010 FvH4_2g08010 FvH4_2g08010 FvH4_2g08010
malus_domestica	MD10G1082400.v1.1
prunus_persica	Prupe.8G105100_v2.0.a1 Prupe.8G105200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262471
rosa_laevigata	RLG00000014420 RLG00000014423
rosa_multiflora	Rmu_co8005002.1_g000001 Rmu_sc0000596.1_g000013 Rmu_sc0010432.1_g000001
rosa_roxburghii	Rroxscaffold_177G00434410 Rroxscaffold_177G00434440 Rroxscaffold_7G00205190 Rroxscaffold_7G00205230
rosa_rugosa	Rorug05G0597700 Rorug05G0597700 Rorug05G0597800 Rorug05G0597800 Rorug05G0597800 Rorug05G0597800 Rorug05G0597900
rosa_samantha	Rh6AG119000 Rh6BG113000 Rh6CG110700 Rh6CG111300 Rh6DG101000
rosa_wichuraiana	Rw6G010280 Rw6G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	179
AarI	CACCTGC	1 cut(s)	41
Acc36I	ACCTGC	3 cut(s)	41, 373, 454
AccB1I	GGYRCC	1 cut(s)	150
AclWI	GGATC	2 cut(s)	59, 392
AcoI	YGGCCR	4 cut(s)	85, 347, 389, 428
AcuI	CTGAAG	4 cut(s)	294, 318, 360, 441
AdeI	CACNNNGTG	1 cut(s)	83
AfaI	GTAC	2 cut(s)	462, 557
AfiI	CCNNNNNNNGG	1 cut(s)	206
AflIII	ACRYGT	1 cut(s)	544
AgsI	TTSAA	4 cut(s)	50, 501, 602, 707
AjnI	CCWGG	1 cut(s)	746
AjuI	GAANNNNNNNTTGG	2 cut(s)	124, 156
AluBI	AGCT	6 cut(s)	287, 314, 338, 380, 595, 605
AluI	AGCT	6 cut(s)	287, 314, 338, 380, 595, 605
Alw21I	GWGCWC	1 cut(s)	759
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	2 cut(s)	59, 392
AoxI	GGCC	6 cut(s)	85, 245, 323, 347, 389, 428
ApeKI	GCWGC	1 cut(s)	638
AspS9I	GGNCC	3 cut(s)	356, 437, 743
AsuHPI	GGTGA	2 cut(s)	22, 23
AvaII	GGWCC	3 cut(s)	356, 437, 743
BaeGI	GKGCMC	1 cut(s)	155
BalI	TGGCCA	2 cut(s)	87, 391
BanI	GGYRCC	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	759
BbvI	GCAGC	1 cut(s)	650
BccI	CCATC	2 cut(s)	8, 744
BciT130I	CCWGG	1 cut(s)	748
BclI	TGATCA	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	1 cut(s)	563
BfmI	CTRYAG	2 cut(s)	255, 606
BfuAI	ACCTGC	3 cut(s)	41, 373, 454
BisI	GCNGC	1 cut(s)	639
BlsI	GCNGC	1 cut(s)	640
Bme1390I	CCNGG	1 cut(s)	748
Bme18I	GGWCC	3 cut(s)	356, 437, 743
BmgT120I	GGNCC	3 cut(s)	356, 437, 743
BmiI	GGNNCC	4 cut(s)	152, 420, 744, 745
BmrFI	CCNGG	1 cut(s)	748
BpmI	CTGGAG	2 cut(s)	324, 366
BsaAI	YACGTR	1 cut(s)	545
BsaBI	GATNNNNATC	2 cut(s)	63, 231
BsaJI	CCNNGG	2 cut(s)	746, 747
BsaXI	ACNNNNNCTCC	4 cut(s)	298, 328, 394, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse1I	ACTGG	3 cut(s)	261, 358, 439
Bse3DI	GCAATG	2 cut(s)	175, 727
Bse8I	GATNNNNATC	2 cut(s)	63, 231
BseBI	CCWGG	1 cut(s)	748
BseDI	CCNNGG	2 cut(s)	746, 747
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	2 cut(s)	63, 231
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMI	GCAATG	2 cut(s)	175, 727
BseNI	ACTGG	3 cut(s)	261, 358, 439
BseRI	GAGGAG	1 cut(s)	713
BseSI	GKGCMC	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	650
BshFI	GGCC	6 cut(s)	87, 247, 325, 349, 391, 430
BshNI	GGYRCC	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	759
BslFI	GGGAC	2 cut(s)	564, 756
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	246
BsmFI	GGGAC	2 cut(s)	564, 756
BsnI	GGCC	6 cut(s)	87, 247, 325, 349, 391, 430
Bsp1286I	GDGCHC	3 cut(s)	155, 275, 759
Bsp143I	GATC	3 cut(s)	64, 397, 478
BspANI	GGCC	6 cut(s)	87, 247, 325, 349, 391, 430
BspLI	GGNNCC	4 cut(s)	152, 420, 744, 745
BspMI	ACCTGC	3 cut(s)	41, 373, 454
BspPI	GGATC	2 cut(s)	59, 392
BspT107I	GGYRCC	1 cut(s)	150
BsrDI	GCAATG	2 cut(s)	175, 727
BsrI	ACTGG	3 cut(s)	261, 358, 439
BssECI	CCNNGG	2 cut(s)	746, 747
BssMI	GATC	3 cut(s)	64, 397, 478
Bst2UI	CCWGG	1 cut(s)	748
Bst4CI	ACNGT	3 cut(s)	470, 555, 688
Bst6I	CTCTTC	1 cut(s)	639
BstAPI	GCANNNNNTGC	1 cut(s)	42
BstBAI	YACGTR	1 cut(s)	545
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	1 cut(s)	768
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	3 cut(s)	67, 400, 481
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	3 cut(s)	64, 397, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNI	CCWGG	1 cut(s)	748
BstNSI	RCATGY	1 cut(s)	562
BstSCI	CCNGG	1 cut(s)	746
BstSFI	CTRYAG	2 cut(s)	255, 606
BstSLI	GKGCMC	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	650
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	6 cut(s)	87, 247, 325, 349, 391, 430
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	268
BveI	ACCTGC	3 cut(s)	41, 373, 454
Cac8I	GCNNGC	1 cut(s)	285
Cfr13I	GGNCC	3 cut(s)	356, 437, 743
Csp6I	GTAC	2 cut(s)	461, 556
CviAII	CATG	3 cut(s)	117, 137, 559
CviQI	GTAC	2 cut(s)	461, 556
DdeI	CTNAG	1 cut(s)	768
DpnI	GATC	3 cut(s)	66, 399, 480
DpnII	GATC	3 cut(s)	64, 397, 478
DraI	TTTAAA	1 cut(s)	231
DraIII	CACNNNGTG	1 cut(s)	83
EaeI	YGGCCR	4 cut(s)	85, 347, 389, 428
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
Eco24I	GRGCYC	1 cut(s)	275
Eco47I	GGWCC	3 cut(s)	356, 437, 743
Eco57I	CTGAAG	4 cut(s)	294, 318, 360, 441
EcoO109I	RGGNCCY	1 cut(s)	743
EcoRII	CCWGG	1 cut(s)	746
EcoT38I	GRGCYC	1 cut(s)	275
FaeI	CATG	3 cut(s)	120, 140, 562
FaqI	GGGAC	2 cut(s)	564, 756
FatI	CATG	3 cut(s)	116, 136, 558
FbaI	TGATCA	1 cut(s)	478
Fnu4HI	GCNGC	1 cut(s)	639
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	639
FspBI	CTAG	1 cut(s)	563
GluI	GCNGC	1 cut(s)	639
GsuI	CTGGAG	2 cut(s)	324, 366
HaeIII	GGCC	6 cut(s)	87, 247, 325, 349, 391, 430
Hin1II	CATG	3 cut(s)	120, 140, 562
HinfI	GANTC	5 cut(s)	27, 50, 140, 196, 626
HphI	GGTGA	2 cut(s)	22, 23
Hpy188I	TCNGA	2 cut(s)	478, 519
Hpy188III	TCNNGA	3 cut(s)	341, 383, 422
HpyAV	CCTTC	6 cut(s)	342, 384, 423, 507, 662, 722
HpyCH4III	ACNGT	3 cut(s)	470, 555, 688
HpyCH4IV	ACGT	1 cut(s)	544
HpyCH4V	TGCA	3 cut(s)	36, 99, 168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	1 cut(s)	768
HpySE526I	ACGT	1 cut(s)	544
Hsp92II	CATG	3 cut(s)	120, 140, 562
KflI	GGGWCCC	1 cut(s)	743
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	3 cut(s)	64, 397, 478
LmnI	GCTCC	4 cut(s)	319, 343, 385, 424
Lsp1109I	GCAGC	1 cut(s)	650
MaeI	CTAG	1 cut(s)	563
MaeII	ACGT	1 cut(s)	544
MaeIII	GTNAC	2 cut(s)	73, 709
MalI	GATC	3 cut(s)	66, 399, 480
MboI	GATC	3 cut(s)	64, 397, 478
MboII	GAAGA	3 cut(s)	447, 656, 677
MfeI	CAATTG	1 cut(s)	69
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	3 cut(s)	155, 275, 759
MlsI	TGGCCA	2 cut(s)	87, 391
MluCI	AATT	1 cut(s)	69
MluNI	TGGCCA	2 cut(s)	87, 391
MlyI	GAGTC	1 cut(s)	635
MmeI	TCCRAC	1 cut(s)	425
MnlI	CCTC	7 cut(s)	141, 210, 561, 628, 642, 691, 694
Mox20I	TGGCCA	2 cut(s)	87, 391
MscI	TGGCCA	2 cut(s)	87, 391
MseI	TTAA	3 cut(s)	230, 539, 660
MslI	CAYNNNNRTG	1 cut(s)	563
Msp20I	TGGCCA	2 cut(s)	87, 391
MspR9I	CCNGG	1 cut(s)	748
MunI	CAATTG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	748
MwoI	GCNNNNNNNGC	1 cut(s)	42
NdeII	GATC	3 cut(s)	64, 397, 478
NlaIII	CATG	3 cut(s)	120, 140, 562
NlaIV	GGNNCC	4 cut(s)	152, 420, 744, 745
NmeAIII	GCCGAG	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	709
NspI	RCATGY	1 cut(s)	562
PaqCI	CACCTGC	1 cut(s)	41
PasI	CCCWGGG	1 cut(s)	747
PfeI	GAWTC	4 cut(s)	27, 50, 140, 196
PkrI	GCNGC	1 cut(s)	640
PleI	GAGTC	1 cut(s)	634
PpsI	GAGTC	1 cut(s)	634
Ppu21I	YACGTR	1 cut(s)	545
PpuMI	RGGWCCY	1 cut(s)	743
PsiI	TTATAA	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	743
Psp6I	CCWGG	1 cut(s)	746
PspGI	CCWGG	1 cut(s)	746
PspN4I	GGNNCC	4 cut(s)	152, 420, 744, 745
PspPI	GGNCC	3 cut(s)	356, 437, 743
PspPPI	RGGWCCY	1 cut(s)	743
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	2 cut(s)	462, 557
RsaNI	GTAC	2 cut(s)	461, 556
RseI	CAYNNNNRTG	1 cut(s)	563
SaqAI	TTAA	3 cut(s)	230, 539, 660
SatI	GCNGC	1 cut(s)	639
Sau3AI	GATC	3 cut(s)	64, 397, 478
Sau96I	GGNCC	3 cut(s)	356, 437, 743
SchI	GAGTC	1 cut(s)	635
ScrFI	CCNGG	1 cut(s)	748
SduI	GDGCHC	3 cut(s)	155, 275, 759
SfcI	CTRYAG	2 cut(s)	255, 606
SinI	GGWCC	3 cut(s)	356, 437, 743
SmiI	ATTTAAAT	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	563
Sse9I	AATT	1 cut(s)	69
SspMI	CTAG	1 cut(s)	563
StyD4I	CCNGG	1 cut(s)	746
SwaI	ATTTAAAT	1 cut(s)	231
TaaI	ACNGT	3 cut(s)	470, 555, 688
TaiI	ACGT	1 cut(s)	547
TaqI	TCGA	1 cut(s)	629
TasI	AATT	1 cut(s)	69
TatI	WGTACW	1 cut(s)	555
TfiI	GAWTC	4 cut(s)	27, 50, 140, 196
Tru1I	TTAA	3 cut(s)	230, 539, 660
Tru9I	TTAA	3 cut(s)	230, 539, 660
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	1 cut(s)	709
TseI	GCWGC	1 cut(s)	638
Tsp45I	GTSAC	1 cut(s)	709
TspDTI	ATGAA	3 cut(s)	113, 462, 678
TspGWI	ACGGA	1 cut(s)	728
TspRI	CASTG	1 cut(s)	268
VpaK11BI	GGWCC	3 cut(s)	356, 437, 743
XceI	RCATGY	1 cut(s)	562
XspI	CTAG	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.